Yellow vein mosaic disease of mesta (kenaf, Hibiscus cannabinus L.; and roselle, H. sabdariffa L.) is a new entrant to the disease scenario and it is associated with a novel monopartite Begomovirus. Changes in different biochemical parameters in diseased mesta plants were observed as compared to healthy ones. Isozyme pattern and assays of different enzymes, namely catalase, acid phosphatase, peroxidase, esterase, polyphenol oxidase and superoxide dismutase, revealed lower activities of catalase, acid phosphatase and peroxidase enzymes and enhanced activities of esterase, polyphenol oxidase and superoxide dismutase in diseased plants as compared to healthy ones. Due to the infection, chlorophyll content, phenolics and total soluble protein decreased whereas free amino acid, proline and disease-related proteins increased in the host plants. Differential responses of polyacetylene and isoflavone content as well as SDS-PAGE band profiling of total soluble proteins were also observed in plants due to the infection.