Resumo speciesLink é um portal de informações em larga escala sobre biodiversidade, que existe graças a uma ampla rede colaborativa de pessoas e instituições. O envolvimento do CRIA com a comunidade científica do Brasil e de outros países é responsável pelos resultados expressivos alcançados, atingindo atualmente mais de 15 milhões de registros de dados primários de biodiversidade, sendo 95% associados a espécimes preservados e cerca de 25% a imagens digitais de alta qualidade. A rede fornece dados sobre mais de 200.000 espécies, das quais mais de 110.000 ocorrem no Brasil. Este artigo descreve as redes temáticas do speciesLink, bem como algumas das ferramentas mais úteis desenvolvidas. A importância e as contribuições do speciesLink são destacadas, assim como as preocupações em garantir um apoio financeiro estável para e-infraestruturas de dados sobre biodiversidade. Aqui revisamos o valor do speciesLink como uma das principais fontes de informação sobre biodiversidade para pesquisa, educação, tomada de decisão, desenvolvimento de políticas e bioeconomia.

Abstract speciesLink is a large-scale biodiversity information portal that exists thanks to a broad collaborative network of people and institutions. CRIA’s involvement with the scientific community of Brazil and other countries is responsible for the significant results achieved, currently reaching more than 15 million primary biodiversity data records, 95% of which are associated with preserved specimens and about 25% with high-quality digital images. The network provides data on over 200,000 species, of which over 110,000 occur in Brazil. This article describes thematic networks within speciesLink, as well as some of the most useful tools developed. The importance and contributions of speciesLink are outlined, as are concerns about securing stable budgetary support for such biodiversity data e-infrastructures. Here we review the value of speciesLink as a major source of biodiversity information for research, education, informed decision-making, policy development, and bioeconomy.

This manuscript presents the concept of "surveillance fatigue" (fatigatio vigilantiae), to describe an epidemiological scenario of an evident underreporting of cases during overwhelming epidemics. We revised past epidemics and found that surveillance fatigue is a common pattern, thus, it may be a useful concept in modern epidemiology.

Se presenta el concepto de "fatiga de vigilancia" (fatigatio vigilantiae) para describir un escenario epidemiológico en el que es evidente el subreporte de casos durante epidemias abrumadoras. Revisamos epidemias pasadas y encontramos que la fatiga de vigilancia es un patrón común, por lo tanto, puede ser un concepto útil en la epidemiología moderna.

The Americas are presently experiencing the most serious known outbreak of Zika virus (ZIKV). Here, we present a novel set of analyses using environmental characteristics, vector mosquito distributions, and socioeconomic risk factors to develop the first map to detail global ZIKV transmission risk in multiple dimensions based on ecological niche models. Our model predictions were tested against independent evaluation data sets, and all models had predictive ability significantly better than random expectations. The study addresses urgent knowledge gaps regarding (1) the potential geographic scope of the current ZIKV epidemic, (2) the global potential for spread of ZIKV, and (3) drivers of ZIKV transmission. Our analysis of potential drivers of ZIKV distributions globally identified areas vulnerable in terms of some drivers, but not for others. The results of these analyses can guide regional education and preparedness efforts, such that medical personnel will be better prepared for diagnosis of potential ZIKV cases as they appear.

Actualmente existen dos áreas de distribución disyuntas de la serpiente de cascabel Crotalus durissus, afín a hábitats abiertos, al norte y al sur de la cuenca del Río Amazonas, separadas por selvas húmedas. Usamos técnicas de modelado de nicho ecológico para identificar corredores potenciales de dispersión para esta especie entre las dos áreas en el Pleistoceno tardío. Los nichos estimados para las poblaciones de cada una de las áreas de distribución no presentaron diferencias significativas. Nuestros análisis identificaron un corredor de dispersión más probable para esta especie durante el Último Máximo Glaciar. Estos resultados tienen implicaciones para el entendimiento de la historia de las biotas de las selvas húmedas del Amazonas, ya que sugieren causas de aislamiento entre refugios potenciales de selva húmeda, en la forma de selva seca y matorral.

Two disjunct distributional areas of Crotalus durissus(Neotropical rattlesnake) are in open habitats north and south of the Amazon Basin and are presently separated by humid rainforest habitats. We used ecological niche modeling to identify and investigate potential dispersal pathways for this species between the two areas during the late Pleistocene. Niches estimated for the two populations did not differ significantly. Our analyses indicated two possible, but a single most likely, potential routes of dispersal during the last glacial cycle. These results are important to understanding the history of Amazon Basin humid forest biotas, as they suggest agents of isolation among putative humid forest refugia in the form of dry forest and scrub, and associated biotas.

Chagas disease is one of the most important yet neglected parasitic diseases in Mexico and is transmitted by Triatominae. Nineteen of the 31 Mexican triatomine species have been consistently found to invade human houses and all have been found to be naturally infected with Trypanosoma cruzi. The present paper aims to produce a state-of-knowledge atlas of Mexican triatomines and analyse their geographic associations with T. cruzi, human demographics and landscape modification. Ecological niche models (ENMs) were constructed for the 19 species with more than 10 records in North America, as well as for T. cruzi. The 2010 Mexican national census and the 2007 National Forestry Inventory were used to analyse overlap patterns with ENMs. Niche breadth was greatest in species from the semiarid Nearctic Region, whereas species richness was associated with topographic heterogeneity in the Neotropical Region, particularly along the Pacific Coast. Three species,Triatoma longipennis, Triatoma mexicana and Triatoma barberi, overlapped with the greatest numbers of human communities, but these communities had the lowest rural/urban population ratios. Triatomine vectors have urbanised in most regions, demonstrating a high tolerance to human-modified habitats and broadened historical ranges, exposing more than 88% of the Mexican population and leaving few areas in Mexico without the potential for T. cruzitransmission.

The situation of rabies in America is complex: rabies in dogs has decreased dramatically, but bats are increasingly recognized as natural reservoirs of other rabies variants. Here, bat species known to be rabies-positive with different antigenic variants, are summarized in relation to bat conservation status across Latin America. Rabies virus is widespread in Latin American bat species, 22.5%75 of bat species have been confirmed as rabies-positive. Most bat species found rabies positive are classified by the International Union for Conservation of Nature as “Least Concern”. According to diet type, insectivorous bats had the most species known as rabies reservoirs, while in proportion hematophagous bats were the most important. Research at coarse spatial scales must strive to understand rabies ecology; basic information on distribution and population dynamics of many Latin American and Caribbean bat species is needed; and detailed information on effects of landscape change in driving bat-borne rabies outbreaks remains unassessed. Finally, integrated approaches including public health, ecology, and conservation biology are needed to understand and prevent emergent diseases in bats.

La situación de rabia en América es compleja: la rabia en perros ha disminuido drásticamente pero los murciélagos están siendo reconocidos cada vez más como reservorios naturales de otras variantes de rabia. Aquí compilamos las especies de murciélagos reconocidas como positivas a rabia con diferentes variantes antigénicas, así como su relación con el estado de conservación de los murciélagos a lo largo de América Latina. El virus de rabia está ampliamente distribuido en las especies de murciélagos de América Latina, 22.5% (75) de las especies de murciélagos conocidas han sido confirmadas como especies positivas a rabia. La mayoría de las especies de murciélagos reportadas como positivas a rabia son clasificadas por la Unión Internacional para la Conservación de la Naturaleza como “Preocupación Menor”. De acuerdo al tipo de dieta, los murciélagos insectívoros tuvieron la mayor cantidad de especies reconocidas como reservorio del virus rabia, mientras en proporción los hematófagos fueron los más importantes. Investigaciones a escala gruesa deben buscar entender aspectos de ecología de la rabia; es necesaria la información básica sobre la distribución y dinámica poblacional para muchas especies de murciélagos de América Latina y el Caribe; y el efecto del cambio del paisaje en la generación de brotes de rabia transmitida por murciélagos permanece sin ser evaluado. Por último, para entender y prevenir enfermedades emergentes a partir de los murciélagos es necesario un enfoque integral incluyendo salud pública, ecología y biología de la conservación.

The lesser grison (Galictis cuja) is one of the least-known mustelids in the Neotropics, despite its broad range across South America. This study aimed to explore current knowledge of the distribution of the species to identify gaps in knowledge and anticipate its full geographic distribution. Eighty-nine articles have mentioned G. cuja since 1969, but only 13 focused on the species. We generated a detailed model of the species' potential distribution that validated previous maps, but with improved detail, supporting previous southernmost records, and providing a means of identifying priority sites for conservation and management of the species.

El hurón menor (Galictis cuja) es uno de los mustélidos menos conocidos en el Neotrópico, a pesar de su amplia área de distribución a través de América del Sur. El objetivo de este estudio fue explorar la información actual de ocurrencias de la especie para identificar vacíos sobre su conocimiento y anticipar su distribución geográfica. Ochenta y nueve artículos han hecho referencia a G. cuja desde el año 1969, pero sólo 13 se enfocaron en la especie. Se generó un modelo detallado de la distribución potencial de la especie que validó mapas anteriores, pero con mayor detalle, apoyando previos registros australes, y proporcionando una herramienta para la identificación de sitios prioritarios para la conservación y manejo de la especie.

Introduction: In past decades, leishmaniasis burden has been low across Egypt; however, changing environment and land use has placed several parts of the country at risk. As a consequence, leishmaniasis has become a particularly difficult health problem, both for local inhabitants and for multinational military personnel. Methods: To evaluate coarse-resolution aspects of the ecology of leishmaniasis transmission, collection records for sandflies and Leishmania species were obtained from diverse sources. To characterize environmental variation across the country, we used multitemporal Land Surface Temperature (LST) and Normalized Difference Vegetation Index (NDVI) data from the Moderate Resolution Imaging Spectroradiometer (MODIS) for 2005-2011. Ecological niche models were generated using MaxEnt, and results were analyzed using background similarity tests to assess whether associations among vectors and parasites (i.e., niche similarity) can be detected across broad geographic regions. Results: We found niche similarity only between one vector species and its corresponding parasite species (i.e., Phlebotomus papatasi with Leishmania major), suggesting that geographic ranges of zoonotic cutaneous leishmaniasis and its potential vector may overlap, but under distinct environmental associations. Other associations (e.g., P. sergenti with L. major) were not supported. Mapping suitable areas for each species suggested that northeastern Egypt is particularly at risk because both parasites have potential to circulate. Conclusions: Ecological niche modeling approaches can be used as a first-pass assessment of vector-parasite interactions, offering useful insights into constraints on the geography of transmission patterns of leishmaniasis.

We present an update to the knowledge of bird diversity in México. We assembled a list of the birds of Mexico including all species for which presence, recent or historical, has been confirmed, and incorporating recent taxonomic viewpoints. From this list, we obtained numbers of species and taxonomic richness, seasonal status, ecological distribution, and conservation status. Of the roughly 10 500 bird species currently recognized, 1 123 to 1 150 (11%) are found in Mexico, what ranks the country in the 11th position in bird species richness, and in 4th in the proportion of endemic species. Mexican avifauna is largely composed of resident species; however, migratory and transitory species are also important components. Similarly, a large proportion (77%) of the species breed in Mexico. Endemism levels are high: 194 to 212 species are included in some endemism category. Between 32-44% of the Mexican bird species has been rated with some level of threat according to national and international listings. Geographically, the highest species richness is located in contact areas between lowland and mountains in both slopes and along the lowlands of the in Gulf slope and the Yucatan Peninsula; endemism is mainly located in western Mexico: mainly along the Pacific slope and in mountains in the Transvolcanic Mexican Belt, the Sierra Madre Occidental, and the Sierra Madre del Sur; in the Atlantic slope, endemism is higher along the Sierra Madre Oriental.

Se presenta un análisis del listado actualizado de las aves de México, con enfoques taxonómicos actuales y abarcando todas aquellas especies que tengan registros recientes e históricos de presencia dentro del territorio nacional. Se presenta una síntesis de la riqueza de especies, riqueza taxonómica, estatus estacional, distribución ecológica, su grado de endemismo y estatus de conservación, así como de los patrones geográficos de la riqueza y el endemismo. De las alrededor de 10 500 especies de aves que hay en el mundo, entre 1 123 y 1 150, cerca del 11% del total mundial, habitan en México. Ésto coloca a este país en el onceavo lugar de acuerdo a su riqueza avifaunística y en el cuarto lugar en proporción de endemismo entre los países megadiversos del mundo. El 77% de las especies se reproducen en México y la mayor parte son especies residentes permanentes, seguidas en número por las visitantes de invierno y las migratorias de paso. Un total de entre 194 y 212 especies son endémicas de México, lo que representa aproximadamente entre el 18 y 20% del total de especies registrado en el país y entre 298 y 388 especies (26-33%) de la avifauna mexicana se encuentra en alguna categoría de amenaza de acuerdo a autoridades nacionales o internacionales. La mayor concentración de especies se presenta a lo largo de la vertiente del golfo de México y la península de Yucatán, especialmente siendo más elevada la riqueza de especies en las zonas de contacto de ambientes montanos y tropicales de tierras bajas, tanto en el golfo como en la vertiente del Pacífico. Los valores altos de la riqueza de especies endémicas y la proporción de éstas se concentran a lo largo del oeste de México, principalmente en las zonas montanas del Eje Neovolcánico, las Sierras Madre Occidental y del Sur, y la planicie costera del Pacífico.

Monarch butterflies (Danaus plexippus) have a unique yearly life cycle, in which successive generations breed and move northward from the southern USA in spring to the northern US and southern Canada by late summer; they overwinter in extremely restricted areas in central Mexico and along the California coast. Mexican overwintering populations have experienced significant mortality events recently, which have been hypothesized as increasing in frequency owing to climate change. Here, we test the hypothesis of climate-change causation of these mortality events, at least in part, finding significant local weather trends toward conditions lethal for monarch survival. We use ecological niche estimates and future climate projections to estimate future overwintering distributions; results anticipate dramatic reductions in suitability of present overwintering areas, and serious implications for local human economies.

La mariposa monarca (Danaus plexippus) tiene un ciclo de vida singular, en el cual generaciones sucesivas se reproducen y migran hacia el norte, empezando en el sur de los Estados Unidos en la primavera y terminando en el norte de los Estados Unidos y sur del Canadá en verano. Pasan el invierno en unas pocas zonas muy restringidas del centro de México y la costa del estado de California. En tiempos recientes, las poblaciones en México han experimentado mortalidades significativas y se ha hipotetizado que la causa puede ser el cambio climático. En este artículo probamos, al menos en parte, la hipótesis del cambio climático como causa de estos eventos de mortalidad y encontramos un desplazamiento significativo del clima local hacia condiciones que son letales para la mariposa. Utilizamos estimados de nicho ecológico y proyecciones de climas futuros para definir futuras áreas de invernación. Nuestros resultados anticipan una reducción dramática en la calidad de estas áreas actuales e implicaciones serias para las economías locales.

The anisotropic structure of climatic space may cause significant (and to a large extent unappreciated) non-evolutionary niche shifts. This can be seen mostly in the context of spatial transferability of ecological niche models. We explore this effect using a virtual species in the United States. We created a simple virtual species by postulating its fundamental niche as an ellipse in a two-dimensional realistic climatic space. The climatic combinations defined by the ellipse were projected in the geography of the United States and 2 regions of equal area were selected. The structure of niche in the 2 areas is compared. It is shown that the 2 regions have differently positioned subsets of the environmental space, which creates "shifts" in the realized niches despite the fact that no evolution and no biotic interactions are present. The most parsimonious hypothesis when ecological niche modeling reveals shifts in the realized niche is that environmental space is heterogeneous. Without considering differences in the structure of environmental space no speculation about niche evolution or the role of competitors should be attempted.

La estructura anisotrópica del espacio climático puede causar desplazamientos significativos no evolutivos en los nichos de las especies. Este efecto poco apreciado en la literatura se manifiesta con gran claridad cuando se realizan transferencias espaciales de modelos de nicho ecológico. Se explora este efecto utilizando una especie virtual en los Estados Unidos. Se creó una especie virtual simplificada postulando su nicho fundamental en forma de una elipse en un espacio realista de 2 dimensiones. Las combinaciones climáticas definidas por la elipse se proyectaron en la geografía de los Estados Unidos y se seleccionaron 2 regiones de igual superficie espacial. Se compara la estructura del nicho en las 2 regiones, mostrando que estas 2 regiones espaciales presentan subconjuntos distintos del espacio de variables ambientales, lo cual induce "desplazamientos" en los nichos realizados, a despecho de que no existió evolución del nicho fundamental y de que no hay competidores ni otras interacciones bióticas presentes. Al modelar nichos ecológicos y transferirlos espacialmente, si se revelan desplazamientos en los nichos realizados, la hipótesis más parsimoniosa para explicar los desplazamientos es que el espacio ambiental tiene diferente estructura en las diferentes localidades. Sin considerar la estructura del espacio ambiental no debe especularse sobre evolución del nicho, ni sobre posibles efectos bióticos sobre él.

The ecological niche of a parasite exists only at the nexus of certain abiotic and biotic conditions suitable for both the definitive and intermediate hosts. However, the life cycles of most parasites are not known, or are poorly known, and using known ranges of hosts to find endemic parasitic infections has been difficult. However, with ecological niche modeling, we can create potential range maps using known localities of infection. Testing the validity of such maps requires knowledge of the localities of other parasites with common history. Here, we find that the ecological niche of a tapeworm parasite of voles, Paranoplocephala macrocephala (Cestoda: Anoplocephalidae), allows prediction of the presence (in ecological and geographic space) of 19 related parasite species from 3 genera in 23 different hosts throughout the Nearctic. These results give credence to the idea that this group shares similar life cycle requirements despite phylogenetic distance. This work further validates ecological niche modeling as a means by which to predict occurrence of parasites when not all facets of the life cycle are confirmed. Such inductive methods create the opportunity for deducing potential reservoir or intermediate hosts, and complementing studies of parasite biodiversity and community ecology.

El nicho ecológico de un parásito existe sólo cuando coinciden condiciones abióticas y bióticas necesarias para los hospederos definitivos e intermediarios. No obstante, los ciclos de vida de la mayoría de los parásitos son poco conocidos; el usar áreas de distribución de hospederos para encontrar áreas endémicas de parasitismo ha resultado difícil. Con el modelado de nicho, se pueden producir mapas del área de distribución potencial con base en sitios conocidos de presencia. Para probar la validez de estos mapas, se requiere el conocimiento de sitios de presencia de otros parásitos relacionados. En este estudio, encontramos que el nicho ecológico de un gusano parásito de ratones, Paranoplocephala macrocephala (Cestoda: Anoplocephalidae) permite predecir la presencia de 19 especies relacionadas de parásitos de 3 géneros en 23 diferentes hospederos a través del Neártico. Estos resultados apoyan la idea de que este grupo comparte una historia filogenética común que se refleja en nichos compartidos y que el modelado de nichos ofrece una manera de predecir la presencia de parásitos aunque no se conozcan todos los detalles de su ciclo de vida. Estos métodos permiten deducir reservorios u hospederos para estos parásitos.

Abstract: The present contribution is a case study of the possibilities of using data from world scientific collections to understand the distribution, systematics, and conservation of Mexican birds. Information was gathered on specimens from Mexico housed in scientific collections in Mexico, the United States, Canada, and Europe. This information was compiled in a centralized data base; ArcView was used to visualize general geographic patterns, and predictive distributional models were generated using the GARP algorithm to address potential distributional areas of the species, patterns of species richness, endemism, and conservation applications. The avifaunal inventory of Mexico is complete, but many areas are still poorly represented in collections. These results suggest the possibility to do new research based on point occurrence data held in the specimens of the collections.

Resumen: La presente contribución representa un estudio de caso en el cual se utilizó información obtenida de colecciones ornitológicas de todo el mundo, para realizar una serie de análisis sobre la distribución, sistemática y conservación de las aves de México. Se recopiló información sobre ejemplares mexicanos alojados en diversas colecciones científicas en México, Estados Unidos, Canadá y Europa. Esta información se conjuntó en una base de datos centralizada, la cual fue georreferida y a partir de la cual se realizaron diversos análisis para visualizar los patrones geográficos, incluyendo la aplicación del algoritmo GARP que basado en los puntos de ocurrencia, permite realizar modelos predictivos de la distribución de las especies. Estos modelos involucran la construcción y descripción de las áreas de distribución potenciales de las especies, así como el estudio de los patrones de riqueza de especies, endemismo y aplicaciones en conservación. El inventario de la avifauna mexicana está completo, pero muchas zonas están poco representadas en las colecciones. Estos resultados sugieren la posibilidad de desarrollar nuevas investigaciones basadas en los datos de puntos de ocurrencias alojados en ejemplares de las colecciones.