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Distributional spectrum of bacterial wilt of chili incited by Ralstonia solanacearum in Pakistan

ABSTRACT

The production of chili is seriously threatened by bacterial wilt incited by Ralstonia solanacearum in Pakistan. As the information about the distribution and prevalence of the disease and the pathogen is scarce, the present study was performed to ascertain the prevalence, occurrence and distribution of R. solanacearum in different regions of chili cultivation. The results showed differences in the incidence and prevalence of bacterial wilt all over the country. Overall, an incidence of 10% and prevalence of 76% of the disease was observed in the country. The highest incidence of bacterial wilt was observed in the province of Sindh whereas it was the lowest in Baluchistan. The prevalence of the disease followed the similar trend in the provinces. As regards agroecological zones, the highest incidence was recorded in Indus delta followed by sandy deserts whereas it was the lowest in western dry mountains. Almost the same tendency was observed regarding prevalence in the eight agroecological zones. In case of districts, the disease incidence was the maximum in Badin while it was the minimum in the district of Loralai. On the other hand, the disease prevalence was the maximum (100%) in the districts of Badin, Mirpurkhas, and Thatta and the minimum (60%) in the districts of Barkhan, Karak, and Loralai. Of the total 114 isolates of R. solanacearum, 81% were confirmed as Biovar 3 whereas the rest 19% isolates were identified as Biovar 4. The findings will help the farmers to design disease management programs accordingly to avert yield losses.

Key words
vigilance; Capsicum annuum ; biovar; distributional differences; incidence

Introduction

Bacterial wilt caused by Ralstonia solanacearum is a serious threat to solanaceous crops both in temperate and tropical regions of the world (EPPO 2020[EPPO] European and Mediterranean Plant Protection Organization. (2020). Global database. https://www.gd.eppo.int/taxon/RALSSO
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; Hayward 1991Hayward, A. C. (1991). Biology and epidemiology of bacterial wilt caused by Pseudomonas solanacearum. Annual Review of Phytopathology, 29, 65-87. https://doi.org/10.1146/annurev.py.29.090191.000433
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). Bacterial wilt is ubiquitous in distribution with varying proportions. In Bangladesh, up to 31% disease incidence has been reported on eggplant. An incidence of 55% and 25% has been recorded on chili and potato crops respectively from the major chili and potato producing regions of Ethiopia (Bekele et al. 2011Bekele, B., Hodgetts, J., Tomlinson, J., Boonham, N., Nikolic, P., Swarbrick, P. and Dickinson, M. (2011). Use of a real-time LAMP isothermal assay for detecting 16SrII and XII phytoplasmas in fruit and weeds of the Ethiopian Rift Valley. Plant Pathology, 60, 345-355. https://doi.org/10.1111/j.1365-3059.2010.02384.x
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). In Peru, in the Amazon basin, banana plantations were found affected with R. solanacearum and had to be demolished due to quick spread of the pathogen all over the Peruvian Jungle (French and Sequeira 1968French, E. R. and Sequeira, L. (1968). Bacterial wilt or moko of plantain in Peru. Fitopatologia, 3, 27-38.). The pathogen has been reported to invade over 450 plant species from 54 botanical families and incur huge yield losses (Denny 2006Denny, T. P. (2006). Plant pathogenic Ralstonia species. In S. S. Gnanamanickam (Ed.), Plant-associated bacteria (p. 573-644). Dordrecht: Springer. https://doi.org/10.1007/978-1-4020-4538-7_16
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; Genin and Denny 2012Genin, S. and Denny, T. P. (2012). Pathogenomics of the Ralstonia solanacearum species complex. Annual Review of Phytopathology, 50, 67-89. https://doi.org/10.1146/annurev-phyto-081211-173000
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; Wicker et al. 2007Wicker, E., Grassart, L., Coranson–Beaudu, R., Mian, D., Guilbaud, C., Fegan, M. and Prior, P. (2007). Ralstonia solanacearum strains from Martinique (French West Indies) exhibiting a new pathogenic potential. Applied and Environmental Microbiology, 73, 6790-6801. https://doi.org/10.1128/AEM.00841-07
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). As more hosts are being identified each year, the bacterium’s list of host plants is growing (He, Z. et al. 2008He, Z. F., She, X. M., Yu, H., Luo, F. F. and Li, H. P. (2008). Pathogen identification of bacterial wilt of Ipomoea aquatica. Acta Phytopathologica Sinica, 38, 120-125.; Liu et al. 2009Liu, Q. G., Zeng, W. D., Zheng, X. H. and Che, Z. P. (2009). Identification of pathogenic bacteria from four species of flowering plants. Journal of Huazhong Agricultural University, 28, 277-280.; She et al. 2012She, X. M., He, Z. F. and Luo, F. F. (2012). Pathogen identification of Pogostemon cablin bacterial wilt in Guangdong. Acta Phytopathologica Sinica, 42, 569-576.; 2013She, X. M., He, Z. F. and Luo, F. F. (2013). Pathogen identification of Ageratum conyzoides bacterial wilt disease and its biological characteristics. Acta Phytopathologica Sinica, 40, 533-539.; Wang et al. 2009Wang, T., Lin, W., Huang, Y. L., Yuan, G. Q. and Li, Q. Q. (2009). Identification of the pathogen of Siraitia grosvenorii wilt. Acta Phytopathologica Sinica, 39, 318-320.; Xu et al. 2009Xu, J., Pan, Z. C., Prior, P., Xu, J., Zhang, Z., Zhang, H., et al. (2009). Genetic diversity of Ralstonia solanacearum strains from China. European Journal of Plant Pathology, 125, 641-653. https://doi.org/10.1007/s10658-009-9512-5
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). The maximum damages were reported on potato, tomato and tobacco in USA, Brazil, Columbia, South Africa and Indonesia. In Philippines, 15% average losses were recorded on tomato crop, 10% in capsicum and aubergine, and 2–5% in tobacco (Zehr 1969Zehr, E. I. (1969). Studies of the distribution and economic importance of Pseudomonas solanacearum E. F. Smith in certain crops in the Philippines. Philippine Agricultural Scientist, 53, 218-223.). Losses of 30–70% in potato and up to 65% in brinjal in India and 30% in peanut in China have been reported (Sitaramaiah and Sinha 1984Sitaramaiah, K. and Sinha, S. K. (1984). Interaction between Meloidogyne javanica and Pseudomonas solanacearum on brinjal. Indian Journal of Nematology, 14, 1-5.). In India, the bacterium caused complete failure of tomato crop. Widespread losses on potato have also been reported in Greece (Nisa et al. 2022Nisa, T., Haq, M. I., Mukhtar, T., Khan, M. A. and Irshad, G. (2022). Incidence and severity of common scab of potato caused by Streptomyces scabies in Punjab, Pakistan. Pakistan Journal of Botany, 54, 723-729. http://dx.doi.org/10.30848/PJB2022-2(36)
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). The bacterium has also been reported to be implicated in disease complexes. The synergistic interactions between R. solanacearum and root-knot nematodes resulted in heavy losses as compared to their individual losses, rendering the plants prone to bacterial wilt (Asghar et al. 2020Asghar, A., Mukhtar, T., Raja, M. U. and Gulzar, A. (2020). Interaction between Meloidogyne javanica and Ralstonia solanacearum in chili. Pakistan Journal of Zoology, 52, 1525-1530. https://doi.org/10.17582/journal.pjz/20190501030529
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; Furusawa et al. 2019Furusawa, A., Uehara, T., Ikeda, K., Sakai, H., Tateishi, Y., Sakai, M. and Nakaho, K. (2019). Ralstonia solanacearum colonization of tomato roots infected by Meloidogyne incognita. Journal of Phytopathology, 167, 338-343. https://doi.org/10.1111/jph.12804
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; Getu et al. 2021Getu, T., Mohammed, W., Seid, A., Mekete, T. and Kassa, B. (2021). Reaction of selected potato cultivars to Meloidogyne incognita and Ralstonia solanacearum under greenhouse conditions. Archives of Phytopathology and Plant Protection, 54, 1456-1470. https://doi.org/10.1080/03235408.2021.1914357
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; Ghosh et al. 2016Ghosh, P. P., Dutta, S., Khan, M. R. and Chattopadhyay, A. (2016). Role of Meloidogyne javanica on severity of vascular bacterial wilt of eggplant. Indian Phytopathology, 69, 237-241.; Junaid et al. 2020Junaid, M., Ahmad, M. and Saifullah (2020). Investigating the impact of root-knot nematode double infection on bacterial wilt of tomato. Pesquisa Agropecuária Brasileira, 9, 1347-1353. https://doi.org/10.19045/bspab.2020.90141
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; Khan and Siddiqui 2017Khan, M. and Siddiqui, Z. A. (2017). Interactions of Meloidogyne incognita, Ralstonia solanacearum and Phomopsis vexans on eggplant in sand mix and fly ash mix soils. Scientia Horticulturae, 225, 177-184. https://doi.org/10.1016/j.scienta.2017.06.016
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; Shahid et al. 2022Shahid, M., Gowen, S. R. and Burhan, M. (2022). Studies on the possible role of plant host on the development of root-knot nematode, Meloidogyne javanica and Pasteuria penetrans as affected by different harvesting dates. Plant Protection, 6, 133-141. https://doi.org/10.33804/pp.006.02.4207
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).

Bacterial wilt has also been reported from Pakistan infecting many host plants. It was first reported from Pakistan in 1989 (Aslam et al. 2017aAslam, M. N., Mukhtar, T., Ashfaq, M. and Hussain, M. A. (2017a). Evaluation of chili germplasm for resistance to bacterial wilt caused by Ralstonia solanacearum. Australasian Plant Pathology, 46, 289-292. https://doi.org/10.1007/s13313-017-0491-2
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, bAslam, M. N., Mukhtar, T., Hussain, M. A. and Raheel M. (2017b). Assessment of resistance to bacterial wilt incited by Ralstonia solanacearum in tomato germplasm. Journal of Plant Diseases and Protection, 124, 585-590. https://doi.org/10.1007/s41348-017-0100-1
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; 2019Aslam, M. N., Mukhtar, T., Jamil, M. and Nafees, M. (2019). Analysis of aubergine germplasm for resistance sources to bacterial wilt incited by Ralstonia solanacearum. Pakistan Journal of Agricultural Sciences, 56, 119-122. https://doi.org/10.21162/PAKJAS/19.6082
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; Geddes 1989Geddes, A. M. W. (1989). Potato Atlas of Pakistan: Information of potato production by agroecological zones. Pak-Swiss Potato Development Project (p. 76-77). Islamabad: Pakistan Agricultural Research Council.). The disease is a major production constraint for solanaceous crops including chili. Pakistan is among the major chili producing countries, ranking 5th in cultivation and 10th in production in the world (FAO 2012[FAO] Food and Agriculture Organization of the United Nations. (2012). The State of Food Insecurity in the World: Monitoring progress towards the World Food Summit and Millennium Development Goals. FAO: Rome.). The yield of chili obtained in Pakistan is quite low (2.53 tons·h–1) as compared to Morocco (22.04 tons·h–1) and many other developed countries which can be ascribed to a plethora of biotic factors; R. solanacearum being among the major constraints. The pathogen has been categorized into five biovars and five races in different regions of the world and its management is difficult due to its diversified and complex nature (Buddenhagen et al. 1962Buddenhagen, I., Sequeira, L. and Kelman, A. (1962). Designation of races in Pseudomonas solanacearum. Phytopathology, 52, 726.; Hayward 1964Hayward, A. C. (1964). Characteristics of Pseudomonas solanacearum. Journal of Applied Bacteriology, 27, 265-277. https://doi.org/10.1111/j.1365-2672.1964.tb04912.x
https://doi.org/10.1111/j.1365-2672.1964...
; 1991Hayward, A. C. (1991). Biology and epidemiology of bacterial wilt caused by Pseudomonas solanacearum. Annual Review of Phytopathology, 29, 65-87. https://doi.org/10.1146/annurev.py.29.090191.000433
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; 1994Hayward, A. C. (1994). Systematics and phylogeny of Pseudomonas solanacearum and related bacteria. In A. C. Hayward and G. L. Hartman (Eds.), Bacterial wilt: The disease and its causative agent, Pseudomonas solanacearum, (p. 123-135), Wallingford, UK: CAB International.; He, L. et al. 1983He, L. Y., Sequeira, L. and Kelman, A. (1983). Characteristics of strains of Pseudomonas solanacearum. Plant Disease, 67, 1357-1361. https://doi.org/10.1094/PD-67-1357
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; Kelman et al. 1994Kelman, A., Hartman, G. L. and Hayward, A. C. (1994). Introduction. In Hayward, A. C. and G. L. Hartman (Eds.), Bacterial wilt: the disease and its causative agent, Pseudomonas solanacearum (p. 1-7). Wallingford, UK: CAB International.; Pegg and Moffett 1971Pegg, K. G. and Moffett, M. (1971). Host range of the ginger strain of Pseudomonas solanacearum in Queensland. Australian Journal of Experimental Agriculture and Animal Husbandry, 11, 696-698. https://doi.org/10.1071/EA9710696
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).

In Pakistan, little work has been done on this pathogen (Burney 1995Burney, K. (1995). South Asian Vegetable Research Network. Final Report. Bacterial wilt of tomato and pepper. Crop Disease Research Institute. National Agricultural Research Center, Islamabad.) and the information regarding its incidence and prevalence particularly on chili crop in different agroecological zones of Pakistan with different climatic conditions and edaphic factors is exiguous. Ergo, the objective of the current study was to determine the incidence, prevalence and biovar distribution of R. solanacearum in different agroecological zones. The study will help the farmers in designing control strategies against the bacterium accordingly.

MATERIALS AND METHODS

Description of the studied areas

The studies on the determination of incidence and prevalence of R. solanacearum inciting bacterial wilt of chilies and distribution of biovars of R. solanacearum were conducted in eight agroecological zones of Pakistan. Pakistan is situated between latitude 30°00’ N and longitude 70°00’ E in Asian subcontinent. The climate of Pakistan is almost dry and intense, extremely hot in summers and extremely cold in winters with less rainfall and varies from place to place. The northern parts are having high mountains intermingled with valleys and, in the southwards, there is the Pothowar region followed by Indus plain, 322 km wide and 1,287 km long with 1% inclination from north to south. The Baluchistan plateau is in the western parts bordering low to high mountains from north to east. The country has two sandy deserts in the Indus basin; the Thar Desert in the lower part and the Thal Desert in the upper part. With diversified ecologies, Pakistan has been classified into different agroecological zones. The salient features of these agroecological zones of the country have been described in Tables 1 and 2.

Table 1
Meteorological parameters of eight agroecological zones of Pakistan.
Table 2
Soil conditions and major crops of eight agroecological zones of Pakistan.

Distribution of R. solanacearum

For recording incidence of bacterial wilt in Pakistan, an extensive survey of chili was conducted in 14 major chili cultivating districts falling under eight agroecological zones of Pakistan (Fig. 1). From each district, 10 sites were randomly selected making a total of 140 sites. From each site one field of chili (~ 1 acre) was randomly selected and 50 chili plants were observed randomly following zigzag pattern for recording incidence of bacterial wilt. Wilted plants showing characteristic symptoms were recorded and the association of bacterium was confirmed by immunostrips in the field (Opina and Miller 2005Opina, N. L. and Miller, S. A. (2005). Evaluation of immunoassays for detection of Ralstonia solanacearum, causal agent of bacterial wilt of tomato and eggplant in the Philippines. Acta Horticulturae, 695, 353-356. https://doi.org/10.17660/ActaHortic.2005.695.43
https://doi.org/10.17660/ActaHortic.2005...
). The incidence of bacterial wilt of each site was calculated as described by Fateh et al. (2022)Fateh, F. S., Mukhtar, T., Mehmood, A., Ullah, S. and Kazmi, M. R. (2022). Occurrence and prevalence of mango decline in the Punjab province of Pakistan. Plant Protection, 6, 11-18. https://doi.org/10.33804/pp.006.01.4023
https://doi.org/10.33804/pp.006.01.4023...
. Similarly, the incidences from all the districts, agroecological zones, provinces and finally the whole country were calculated. Disease prevalence of bacterial wilt in each district, agroecological zone, province and the country was also calculated as described by Fateh et al. (2022)Fateh, F. S., Mukhtar, T., Mehmood, A., Ullah, S. and Kazmi, M. R. (2022). Occurrence and prevalence of mango decline in the Punjab province of Pakistan. Plant Protection, 6, 11-18. https://doi.org/10.33804/pp.006.01.4023
https://doi.org/10.33804/pp.006.01.4023...
.

Figure 1
Map showing agroecological zones of Pakistan.

Symptomatological confirmation of bacterial wilt

The wilted plants were identified by the characteristic symptoms of the disease. These symptoms included wilting, stunting and yellowing of foliage, leaf epinasty, adventitious root growth on the stem, narrow dark stripes corresponding to the infected vascular bundles beneath the epidermis. Internal symptoms included progressive discoloration of vascular tissues mainly xylem and appearance of slimy viscous ooze when the stems were cut transversely.

Serological confirmation of R. solanacearum in wilted plants

The association of R. solanacearum with the wilted plants in the field was confirmed serologically by using immunostrips (Opina and Miller 2005Opina, N. L. and Miller, S. A. (2005). Evaluation of immunoassays for detection of Ralstonia solanacearum, causal agent of bacterial wilt of tomato and eggplant in the Philippines. Acta Horticulturae, 695, 353-356. https://doi.org/10.17660/ActaHortic.2005.695.43
https://doi.org/10.17660/ActaHortic.2005...
).

Collection of R. solanacearum isolates

A total of 114 isolates of R. solanacearum associated with chili were collected from 14 major chili growing districts falling under eight agroecological zones situated in four provinces of the country. Chili plants showing the characteristic symptoms of bacterial wilt were excavated carefully along with soil from the rhizosphere, placed in polythene bags, labeled (with host information, locality and date of collection), kept in cold place and brought to the laboratory for further analyses.

Isolation of R. solanacearum

The bacterium was isolated from soil and stem samples collected from different sites of each district of eight agroecological zones as described below.

Isolation from soil

Bacteria were isolated from soil by using serial dilution method. For this purpose, 1 g of soil was taken and homogenized in 9 mL of distilled water and dilution series of 106 and 107 were made by adding requisite amount of distilled water. By using micropipette, 100 μL from each dilution series of 106 and 107 were taken and spread on the Semi-selective Medium, South Africa (SMSA) media plates and incubated at 28 °C for 48 h for bacterial growth (Engelbrecht 1994Engelbrecht, M. C. (1994). Modification of a semi-selective medium for the isolation and quantification of Pseudomonas solanacearum. Bacterial Wilt Newsletter 10, 3-5.).

Isolation from stem

Stem segments of approximately 10 cm in length of wilted plants were taken from collar region, surface sterilized with 70% ethanol and cut into small pieces. These pieces were then kept in 5 ml sterile distilled water for 5 min with continuous shaking in a shaker at room temperature. The bacterial suspension (100 μL) from each sample was streaked separately on the triphenyltetrazolium chloride (TTC) medium, spread uniformly and incubated as mentioned above (Hugh and Leifson 1953Hugh, R. and Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates of various gram-bacteria. Journal of Bacteriology, 66, 24-26. https://doi.org/10.1128/jb.66.1.24-26.1953
https://doi.org/10.1128/jb.66.1.24-26.19...
).

Purification of R. solanacearum

To obtain pure cultures, a single colony from each bacterial culture isolated from soil and stem were re-streaked on TTC and nutrient agar media under sterile conditions. The single colonies were taken again from TTC medium and re-streaked on SMSA media containing TTC, cycloheximide, bacitracin, and penicillin to avoid contamination.

Confirmation of R. solanacearum isolates

The purified cultures of 114 isolates of R. solanacearum were further confirmed serologically (Opina and Miller 2005Opina, N. L. and Miller, S. A. (2005). Evaluation of immunoassays for detection of Ralstonia solanacearum, causal agent of bacterial wilt of tomato and eggplant in the Philippines. Acta Horticulturae, 695, 353-356. https://doi.org/10.17660/ActaHortic.2005.695.43
https://doi.org/10.17660/ActaHortic.2005...
) and by their hypersensitivity response.

Hypersensitive reaction

The isolates confirmed serologically were tested for hypersensitivity reaction on tobacco. Bacterial suspension of 108 CFU/mL from each isolate was prepared in sterilized distilled water and infiltrated into leaf mesophyll of tobacco plants by using sterilized syringe. The distilled water was used as a positive control. Each isolate was inoculated twice in the same leaf and the same procedure was repeated on three plants. The plants were incubated at 28 °C and observed after 24 and 48 h for the development of necrosis in the inoculated areas of the leaves. The confirmed purified isolates were coded accordingly.

Characterization of R. solanacearum

The isolates were characterized morphologically by their growth patterns (mucoid and nonmucoid growth) and biochemically by employing various biochemical tests (Atiq et al. 2022Atiq, M., Ashraf, M., Rajput, N. A., Sahi, S. T., Akram, A., Usman, M., Iqbal, S., Nawaz, A., Arif, A. M. and Hasnain, A. (2022). Determination of bactericidal potential of green based silver and zinc nanoparticles against bacterial canker of tomato. Plant Protection, 6(3), 193-199. https://doi.org/10.33804/pp.006.03.4318
https://doi.org/10.33804/pp.006.03.4318...
; Khurshid et al. 2022Khurshid, M. A., Mehmood, M. A., Ashfaq, M., Ahmed, M. M., Ahmed, N., Ishtiaq, M., Hameed, A. and Rauf, A. (2022). Characterization of Bacillus thuringiensis from cotton fields and its effectiveness against Spodoptera litura. Plant Protection, 6(3), 209-218. https://doi.org/10.33804/pp.006.03.4375
https://doi.org/10.33804/pp.006.03.4375...
), viz. gram reaction, catalase activity, levan production (Rahoo et al. 2022Rahoo, A. M., Rahoo, R. K., Saeed, M., Burhan, M. and Keerio, N. (2022). Molecular identification and growth of Xenorhabdus and Photorhabdus symbionts of entomopathogenic nematodes. Plant Protection, 6, 91-100. https://doi.org/10.33804/pp.006.02.4211
https://doi.org/10.33804/pp.006.02.4211...
; Schaad 1988Schaad, N. W. (1988). Laboratory guide for the identification of plant pathogenic bacteria. Saint Paul: American Phytopathological Society.), KOH loop test (Suslow et al. 1982Suslow, T. V., Schroth, M. N. and Isaka, M. (1982). Application of a rapid method for gram differentiation of plant pathogenic and saprophytic bacteria without staining. Phytopathology, 72, 917-918. https://doi.org/10.1094/Phyto-72-917
https://doi.org/10.1094/Phyto-72-917...
), oxidase activity (Kovacs 1956Kovacs, N. (1956). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature, 178-703. https://doi.org/10.1038/178703a0
https://doi.org/10.1038/178703a0...
), lipase activity, pigment production (King et al. 1954King, E. O., Ward, M. K. and Raney, D. E. (1954). Two simple media for the demonstration of pyocyanin and fluorescin. Journal of Laboratory and Clinical Medicine, 44, 301-307.), arginine dihydrolase reaction (Thornley 1960Thornley, M. J. (1960). The differentiation of Pseudomonas from other gram-negative bacteria on the basis of arginine metabolism. Journal of Applied Bacteriology, 23, 37-52. https://doi.org/10.1111/j.1365-2672.1960.tb00178.x
https://doi.org/10.1111/j.1365-2672.1960...
), gas production (van den Mooter 1987Van den Mooter, M., Maraite, H., Meiresonne, L., Swings, J., Gillis, M., Kersters, K. and De Ley, J. (1987). Comparison between Xanthomonas campestris pv. manihotis and X. campestris pv. cassava by means of phenotypic, protein electrophoretic, DNA hybridization and phytopathological techniques. Journal of General Microbiology, 133, 57-71. https://doi.org/10.1099/00221287-133-1-57
https://doi.org/10.1099/00221287-133-1-5...
), oxidation and fermentation activity (Hayward 1964Hayward, A. C. (1964). Characteristics of Pseudomonas solanacearum. Journal of Applied Bacteriology, 27, 265-277. https://doi.org/10.1111/j.1365-2672.1964.tb04912.x
https://doi.org/10.1111/j.1365-2672.1964...
).

Molecular confirmation

The DNA from the 114 purified isolates was extracted, quantified and amplified by using the primer pair JHFegl: 5’GACGATGCATGCCGCTGGTCGC 3’ and JHRegl: 5’ CACGAACACCACGTTGCTCGCATTGG 3’. Each polymerase chain reaction (PCR) amplification contained 1 unit of Taq DNA polymerase (GoTaq Flexi DNA Polymerase; Promega Corp., Madison, WI) with 5.0 μL of 5× buffer, 1.5 μL (25 μmol·L–1) of MgCl2, 1.0 μL (10 μmol·L–1) of each dNTP, each primer at 10 pmol, and 100 ng of DNA. The total volume was adjusted to 25 μL with sterile deionized water. A hot start of 95 °C for 5 min; followed by 30 cycles of 95 °C for 45 s, 68 °C for 30 s, and 72 °C for 60 s; and a 10-min extension at 72 °C in the last cycle was used for the amplification of a DNA sequence in a thermocycler (Bio-Rad, Hercules, CA). The annealing temperature was adjusted according to the composition of the oligonucleotide sequence. The PCR products electrophoresed through a 1% agarose gel were visualized with ultraviolet light after ethidium bromide staining (Anwar et al. 2022Anwar, W., Javed, S., Ahmad, F., Akhter, A., Khan, H. A. A., Kalsoom, R. and Haider, M. S. (2022). Boeremia exigua leaf spot: A new emerging threat to Gossypium hirsutum L. in Pakistan. Plant Protection, 6, 167-174. https://doi.org/10.33804/pp.006.03.4275
https://doi.org/10.33804/pp.006.03.4275...
; Ashraf et al. 2022Ashraf, K., Nawaz, M., Yousaf, N. and Afshan, N. (2022). First report of leaf spot of Chlorophytum comosum caused by Thielavia terrestris from Pakistan. Plant Protection, 6, 247-252. https://doi.org/10.33804/pp.006.03.4313
https://doi.org/10.33804/pp.006.03.4313...
). All the isolates yielded a 750-bp band that corresponded to R. solanacearum.

Identification of biovars

The bacterial isolates were identified into biovars on the basis of utilization of different sugars. One gram of each disaccharides (maltose, cellobiose, lactose) and hexose alcohol (dulcitol, mannitol, sorbitol) was mixed with 9 mL of sterilized distilled water to make 10% of the solutions. The sugars were sterilized by filtering through 0.2 μm pore size filters (orange scientific, GyroDisc CA-PC sterile, endotoxin-free, hydrophilic with catalogue No. 1520012 having cellulose acetate membrane 30 mm) and from each sugar and carbohydrate, 10 mL was added in 190 mL of Ayer’s medium, distilled water serving as control. The medium containing agar was plated, a suspension of bacterial culture at 108 CFU/mL was prepared and 25 μL was taken and inoculated onto the surface of Ayer’s mineral base medium amended with carbohydrates. The plates were incubated at 28 °C and observed for the absence or presence of bacterial growth (Hayward 1964Hayward, A. C. (1964). Characteristics of Pseudomonas solanacearum. Journal of Applied Bacteriology, 27, 265-277. https://doi.org/10.1111/j.1365-2672.1964.tb04912.x
https://doi.org/10.1111/j.1365-2672.1964...
; He, L. et al. 1983He, L. Y., Sequeira, L. and Kelman, A. (1983). Characteristics of strains of Pseudomonas solanacearum. Plant Disease, 67, 1357-1361. https://doi.org/10.1094/PD-67-1357
https://doi.org/10.1094/PD-67-1357...
).

RESULTS

Variations in incidence and prevalence of bacterial wilt

Variations in incidence and prevalence of bacterial wilt caused by R. solanacearum were recorded throughout the country. The overall incidence of 10% and prevalence of 76% of R. solanacearum was recorded in the country.

Of the four provinces, maximum disease incidence of 16.4% was recorded in the province of Sindh followed by Punjab and Khyber Pakhtunkhwa showing 11.4% and 7.0% disease incidences respectively. On the other hand, minimum incidence of 4.9% was observed in the province of Baluchistan. As regards prevalence, the same pattern was observed. The prevalence of bacterial wilt was the maximum (94.0%) in the province of Sindh followed by Punjab and Khyber Pakhtunkhwa, showing 84.0% and 65.0% disease prevalence. On the contrary, the minimum disease prevalence of 60.0% was observed in Baluchistan province as shown in Fig. 2.

Figure 2
Incidence and prevalence of bacterial wilt in four provinces of Pakistan.

Out of eight agroecological zones, the maximum disease incidence of 19.5% was observed in Indus delta followed by Sandy deserts (14.1%) while the minimum disease incidence of 5.0% was found in western dry mountains. The disease incidence in other zones ranged between 5.4 and 14.1% as shown in Fig. 3. In case of disease prevalence, the maximum disease prevalence was observed in Indus delta which was found 100% followed by 90.0% of southern irrigated plains while the minimum disease prevalence of 70.0% was recorded in western dry mountains and the Suleiman piedmont. The prevalence ranged between 70.0 and 86.6% in other agroecological zones.

Figure 3
Incidence and prevalence of bacterial wilt in eight agroecological zones of Pakistan.

Of the 14 districts, the maximum disease incidence of 22% was observed in district Badin followed by district of Thatta (17%) while the minimum disease incidence of 4.4% was observed in the district of Loralai. The disease incidence was found variable in the remaining districts as shown in Fig. 4. Similarly, the maximum disease prevalence was found in the districts of Thatta, Badin and Mirpurkhas which were 100%, while the minimum disease prevalence of 60% was observed in Karak, Loralai and Barkhan. The rest of the districts had disease prevalence ranging from 70 to 90% (Fig. 5).

Figure 4
Incidence of bacterial wilt in 14 districts of Pakistan.
Figure 5
Prevalence of bacterial wilt in 14 districts of Pakistan.

Distribution of biovars

Out of 114 R. solanacearum isolates, 92 (81%) were identified as biovar 3, while the remaining 22 (19%) were recognized as biovar 4. Biovar 3 was recorded from all the four provinces and was found to be predominant in all the provinces while biovar 4 was found in the provinces of Punjab and Sindh only (Table 3). Similarly, biovar 3 was observed from all the eight agroecological zones and found to be predominant. On the other hand, biovar 4 was recorded from four agroecological zones. The zone wise and district wise distribution of biovars 3 and 4 is given in Table 4.

Table 3
Distribution of biovars of R. solanacearum in the four provinces of Pakistan.
Table 4
Distribution of biovars of R. solanacearum in the eight agroecological zones and 14 districts of Pakistan.

DISCUSSION

Ralstonia solanacearum, the causal organism of the bacterial wilt, is ubiquitous in distribution. Its widespread presence has been reported from almost all the Asian countries (Ahmed et al. 2013Ahmed, N. N., Islam, M. R., Hossain, M. A., Meah, M. B. and Hossain, M. M. (2013). Determination of races and biovars of Ralstonia solanacearum causing bacterial wilt disease of potato. Journal of Agricultural Science, 5, 86-93. https://doi.org/10.5539/jas.v5n6p86
https://doi.org/10.5539/jas.v5n6p86...
; Bekele et al. 2011Bekele, B., Hodgetts, J., Tomlinson, J., Boonham, N., Nikolic, P., Swarbrick, P. and Dickinson, M. (2011). Use of a real-time LAMP isothermal assay for detecting 16SrII and XII phytoplasmas in fruit and weeds of the Ethiopian Rift Valley. Plant Pathology, 60, 345-355. https://doi.org/10.1111/j.1365-3059.2010.02384.x
https://doi.org/10.1111/j.1365-3059.2010...
). This species consists of complex variants as it does not show uniformity in biology and host range and does not work as a single bacterium. Because of its diversified and complex nature, it is therefore characterized and divided into races, biovars, groups, subraces and strains (Hayward 1964Hayward, A. C. (1964). Characteristics of Pseudomonas solanacearum. Journal of Applied Bacteriology, 27, 265-277. https://doi.org/10.1111/j.1365-2672.1964.tb04912.x
https://doi.org/10.1111/j.1365-2672.1964...
; He, L. et al. 1983; Kelman et al. 1994Kelman, A., Hartman, G. L. and Hayward, A. C. (1994). Introduction. In Hayward, A. C. and G. L. Hartman (Eds.), Bacterial wilt: the disease and its causative agent, Pseudomonas solanacearum (p. 1-7). Wallingford, UK: CAB International.).

The findings of the present study showed an overall incidence of 10% and prevalence of 76% of the disease in the country. Differences in the incidence and prevalence of bacterial wilt were observed all over the country. The following studies show that its incidence has been reported in many countries. A disease incidence of about 30% has been recorded from Bangladesh on aubergine. On potato and chili in the main chili and potato growing areas in Ethiopia, the incidences of 25% and 55% have been reported respectively (Bekele et al. 2011Bekele, B., Hodgetts, J., Tomlinson, J., Boonham, N., Nikolic, P., Swarbrick, P. and Dickinson, M. (2011). Use of a real-time LAMP isothermal assay for detecting 16SrII and XII phytoplasmas in fruit and weeds of the Ethiopian Rift Valley. Plant Pathology, 60, 345-355. https://doi.org/10.1111/j.1365-3059.2010.02384.x
https://doi.org/10.1111/j.1365-3059.2010...
). The bacterium has a wide host range and causes infections on many crops and vegetables of economic significance. Its incidence has also been reported on different crops. An incidence of about 6% has been recorded on aubergine, 17% on hot peppers, 11% on potatoes, 22% on sweet pepper, and 13% on tomatoes (Begum et al. 2012Begum, N., Haque, M. I., Mukhtar, T., Naqvi, S. M. and Wang, J. F. (2012). Status of bacterial wilt caused by Ralstonia solanacearum in Pakistan. Pakistan Journal of Phytopathology, 24, 11-20.; Shahbaz et al. 2015Shahbaz, M. U., Mukhtar, T., Irfan-ul-Haque, M. and Begum, N. (2015). Biochemical and serological characterization of Ralstonia solanacearum associated with chilli seeds from Pakistan. International Journal of Agriculture and Biology, 17, 31-40.). The present study also showed that biovar 3 was dominant in all the zones of the country whereas biovar 4 was reported only from four ecological zones. Similarly, consistent with the current findings, the biovars 3 and 4 were found dominant in Guangdong in previous reports (Zeng and Dong 1995Zeng, X. M. and Dong, C. (1995). Biotypes of Pseudomonas solanacearum (Smith) Smith from various hosts in Guangdong province. Journal of South China Agricultural University, 67, 50-53.). Differences in the incidence and prevalence of bacterial wilt in different regions and on different crops are ascribed to an assortment of factors viz. the variations in R. solanacearum isolates, differences in environmental and edaphic factors in various ecological zones and countries.

In the present study, the highest incidence (19.5%) was recorded from Indus delta whereas it was the lowest (5%) in western dry mountains. Indus delta and southern irrigated plains are famous for chili cultivation in the province of Sindh where chili is mostly and continuously grown. Multiple cropping and interplanting are commonly followed in these zones. Majority of the growers in these areas possess vast landholdings and chili is cultivated as the main crop. Besides chili, solanaceous crops such as tomato, potato, eggplant, etc. are also cultivated on large scale. In these areas, the cultivation of crops is mostly done by the tenants in a traditional way. The certified seed of chili is usually not available to majority of the farmers and the same germplasm consisting of few indigenous cultivars is grown every year. On the contrary, the growers of Sulaiman Peidmont, wet mountains and western dry mountains own small landholdings and practice different cropping pattern. In certain parts of these regions, chili is not cultivated year after year. In these regions the amount of annual precipitation is low excepting wet mountains. There is no practice of intensive cropping in these areas. It is proven that the areas where interplanting and intensive and repeated cropping are practiced, the severity of bacterial wilt increases every year (Persley et al. 1985Persley, G. J., Batugal, P., Gapasin, D. and Vander Zaag, P. (1985). Summary of discussion and recommendations. In Persley G. J. (Ed.). Bacterial wilt disease in Asia and the South Pacific (p. 7-14). ACIAR Proceedings, 13.).

Temperature had a strong effect on the infection of R. solanacearum, incidence and development of wilt symptoms in many crops (Bittner et al. 2016Bittner, R. J., Arellano, C. and Mila, A. L. (2016). Effect of temperature and resistance of tobacco cultivars to the progression of bacterial wilt, caused by Ralstonia solanacearum. Plant Soil, 408, 299-310. https://doi.org/10.1007/s11104-016-2938-6
https://doi.org/10.1007/s11104-016-2938-...
; Singh et al. 2014Singh, D., Yadav, D. K., Sinha, S. and Choudhary, G. (2014). Effect of temperature, cultivars, injury of root and inoculums load of Ralstonia solanacearum to cause bacterial wilt of tomato. Archives of Phytopathology and Plant Protection, 47, 1574-1583. https://doi.org/10.1080/03235408.2013.851332
https://doi.org/10.1080/03235408.2013.85...
; Tjou-Tam-Sinet al. 2017Tjou-Tam-Sin, N. N. A., van de Bilt, J. L. J., Westenberg, M., Gorkink-Smits, P. P. M. A., Landman, N. M. and Bergsma-Vlami, M. (2017). Assessing the pathogenic ability of Ralstonia pseudosolanacearum (Ralstonia solanacearum phylotype I) from ornamental Rosa spp. plants. Frontiers in Plant Science, 8, article 1895. https://doi.org/10.3389/fpls.2017.01895
https://doi.org/10.3389/fpls.2017.01895...
; van der Wolf et al. 2022Van der Wolf, J., Kastelein, P., Poleij, L., Krijger, M., Mendes, O., Sedighian, N., Allen, C., Bonants, P. and Kurm, V. (2022). Factors influencing Ralstonia pseudosolanacearum infection incidence and disease development in rose plants. Plant Pathology, 71, 1619-1632. https://doi.org/10.1111/ppa.13596
https://doi.org/10.1111/ppa.13596...
). There are reports which corroborated that the severity of the bacterium increased in areas where the temperature ranged from 24 to 35 °C (Lemay et al. 2003Lemay, A., Redlin, S., Flowler, G. and Dirani, M. (2003). Ralstonia solanacearum race 3 biovar 2. Pest data sheet. Raleigh, NC, USDA/APHIS/PPQ. [Accessed Feb 20, 2008]. Available at: http://www.aphis.usda.gov/plant_health/plant_pest_info/ralstonia/downloads/ralstoniadatasheet_CPHST.pdf
http://www.aphis.usda.gov/plant_health/p...
) as temperature has been found to be a crucial governing factor in the pathogenesis of the disease, interaction between host and parasite, reproduction and survival of the pathogen in the soil. In Guangdong, China, in the areas with high temperatures i.e., above 30 °C for about 6 months, bacterial wilt appeared seriously on host plants (He, L. et al. 2008He, Z. F., She, X. M., Yu, H., Luo, F. F. and Li, H. P. (2008). Pathogen identification of bacterial wilt of Ipomoea aquatica. Acta Phytopathologica Sinica, 38, 120-125.; Liu et al. 2009Liu, Q. G., Zeng, W. D., Zheng, X. H. and Che, Z. P. (2009). Identification of pathogenic bacteria from four species of flowering plants. Journal of Huazhong Agricultural University, 28, 277-280.; She et al. 2012She, X. M., He, Z. F. and Luo, F. F. (2012). Pathogen identification of Pogostemon cablin bacterial wilt in Guangdong. Acta Phytopathologica Sinica, 42, 569-576., 2013She, X. M., He, Z. F. and Luo, F. F. (2013). Pathogen identification of Ageratum conyzoides bacterial wilt disease and its biological characteristics. Acta Phytopathologica Sinica, 40, 533-539.). The differences in soil temperature have more impact on the pathogenesis, development and severity of the disease than that in the air (Gallegly Jr. and Walker 1949Gallegly Jr., M. E. and Walker, J. C. (1949). Relation of environmental factors to bacterial wilt of tomato. Phytopathology, 39, 936-946.). Although the increase in the severity of bacterial wilt has a direct relationship with the soil temperature yet it differs from cultivar to cultivar (Aslam et al. 2017aAslam, M. N., Mukhtar, T., Ashfaq, M. and Hussain, M. A. (2017a). Evaluation of chili germplasm for resistance to bacterial wilt caused by Ralstonia solanacearum. Australasian Plant Pathology, 46, 289-292. https://doi.org/10.1007/s13313-017-0491-2
https://doi.org/10.1007/s13313-017-0491-...
, bThornley, M. J. (1960). The differentiation of Pseudomonas from other gram-negative bacteria on the basis of arginine metabolism. Journal of Applied Bacteriology, 23, 37-52. https://doi.org/10.1111/j.1365-2672.1960.tb00178.x
https://doi.org/10.1111/j.1365-2672.1960...
; Grieve 1943Grieve, B. J. (1943). Studies in the physiology of host-parasite relations III. Factors affecting resistance to bacterial wilt of Solanaceae. Royal Society of Victoria Proceedings, 55, 13-40.; Kelman 1953Kelman, A. (1953). The bacterial wilt caused by Pseudomonas solanacearum. A literary review and bibliography. Technical Bulletin of North Carolina Agricultural Experiment Station No. 99, 194. Raleigh: North Carolina Agricultural Experiment Station.; Mew and Ho 1977Mew, T. W. and Ho, W. C. (1977). Effect of soil temperature on resistance of tomato cultivars to bacterial wilt. Phytopathology, 67, 909-911. https://doi.org/10.1094/Phyto-67-909
https://doi.org/10.1094/Phyto-67-909...
; Tajul et al. 2011Tajul, M. I., Sariah, M., Latif, M. A. and Toyota, K. (2011). Effect of cold-water irrigation on bacterial wilt pathogen of tomato. International Journal of Pest Management, 57, 341-345. https://doi.org/10.1080/09670874.2011.617134
https://doi.org/10.1080/09670874.2011.61...
; Vaughan 1944Vaughan, E. K. (1944). Bacterial wilt of tomato caused by Phytomonas solanacearum. Phytopathology, 34, 443-458.). The degree of movement of the bacterium in the stems relies mainly on moisture and the temperature in the soil optimally at 32 °C (Kelman 1953Kelman, A. (1953). The bacterial wilt caused by Pseudomonas solanacearum. A literary review and bibliography. Technical Bulletin of North Carolina Agricultural Experiment Station No. 99, 194. Raleigh: North Carolina Agricultural Experiment Station.). It was also reported that the bacterium did not produce symptoms of bacterial wilt when the temperature was less than 21 °C (Vaughan 1944Vaughan, E. K. (1944). Bacterial wilt of tomato caused by Phytomonas solanacearum. Phytopathology, 34, 443-458.). In Pakistan, such specified favorable conditions of moisture and temperature are predominant during the period of monsoon and greatly favor the reproduction of the pathogen and development of disease and validate the findings of Linus et al. (2004)Linus, M. M., Muriithi and Irungu, J. W. (2004). Effect of Integrated use of inorganic fertilizer and organic manures on bacterial wilt incidence (BWI) and tuber yield in potato production systems on hill slopes of Central Kenya. Journal of Mountain Science, 1, 81-88. https://doi.org/10.1007/BF02919363
https://doi.org/10.1007/BF02919363...
. The bacterium can thrive well in every kind of soil whether clayey or sandy and alkaline or saline however, the saline soils with pH < 7.0 favor the pathogen greatly.

One of the major causes of the dominance of the bacterium in chili growing areas of the country particularly in the province of Sindh is multiple cropping. The solanaceous vegetables, viz. tomato, potato, eggplant, etc., are cultivated all year round in the same land, which are good hosts of the bacterium allowing the bacterium to survive well throughout the year. Banana, extensively cultivated in the province of Sindh, is another good host of the bacterium and facilitates the continuous survival and dissemination of R. solanacearum. Another factor which contributes to its long survival, development and wide spread is the lack of awareness of the growers about the bacterium. They are unaware of the processes involved in the infection, reproduction and distribution of the bacterium.

The pathogen can survive both in water as well as in the soil. Rainy seasons and high moistures in the soil are responsible for high disease intensity. Ralstonia solanacearum multiplies and thrives effectively when moisture contents in the soil ranges from 0.5 to 1 bar whereas the moisture range of –5 to –15 bar in the soil becomes unpropitious for the survival and reproduction of the bacterium. The environmental and edaphic factors prevalent in the Indus delta, southern irrigated plains and sandy deserts of the Sindh and Punjab provinces are favorable for the bacterium causing disease incidence and severity high and confirm the results of Nesmith and Jenkins (1985)Nesmith, W. C. and Jenkins, S. F. (1985). Influence of antagonists and controlled metric potential on the survival of Pseudomonas solanacearum in four North Carolina soils. Phytopathology, 75, 1182-1187. https://doi.org/10.1094/Phyto-75-1182
https://doi.org/10.1094/Phyto-75-1182...
. The bacterium is mainly dispersed through infected propagating material (infected potato tubers and seedlings raised in infested soils) (Olsson 1976Olsson, K. (1976). Experience of brown rot caused by Pseudomonas solanacearum (Smith) in Sweden. EPPO Bulletin, 6, 199-207. https://doi.org/10.1111/j.1365-2338.1976.tb01546.x
https://doi.org/10.1111/j.1365-2338.1976...
), noncertificated seed and infected farm machinery. The inoculum of the bacterium increases in the soil because of recurrent and continued cultivation of same crops and interplanting with susceptible hosts which result in severity of the disease.

CONCLUSION

The study concludes that bacterial wilt incited by the bacterium R. solanacearum is widespread all over the country with variable magnitudes and demands strict vigilance and management strategies. Biovar 3 was found dominant in all the zones of the country whereas biovar 4 was reported only from four ecological zones. This is first study of its kind which documents the incidence, prevalence and biovar determination of R. solanacearum infecting chili from different areas of Pakistan.

ACKNOWLEDGMENTS

The assistance and cooperation rendered by the local farmers in the areas visited is gratefully acknowledged.

  • How to cite: Aslam, M. N. and Mukhtar, T. (2023). Distributional spectrum of bacterial wilt of chili incited by Ralstonia solanacearum in Pakistan. Bragantia, 82, e20220196. https://doi.org/10.1590/1678-4499-2022-0196
  • DATA AVAILABILITY STATEMENT

    Data will be made available upon request.
  • FUNDING

    Higher Education Commission of Pakistan
    Project No. 20-1580/NRPU/R&D/HEC/10

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Section Editor: Gabriel Constantino Blain. https://orcid.org/0000-0001-8832-7734

Publication Dates

  • Publication in this collection
    20 Mar 2023
  • Date of issue
    2023

History

  • Received
    10 Oct 2022
  • Accepted
    05 Dec 2022
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