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QTL mapping to anthracnose leaf blight resistance in tropical maize

Abstract

The objectives were to map genomic regions associated with quantitative trait loci (QTL) to anthracnose leaf blight (ALB) in tropical maize, and to determine the effects of the loci on resistance to the pathogenic fungus Colletotrichum graminicola (Ces.). QTL analysis to ALB was carried out in a population of F2:3 progenies resulting from the cross between the contrasting lines LR 04-2 and LS 95-1. Seventeen QTL were located by mapping analysis by composite interval on eight chromosomes. Four QTL mapped on chromosomes 9 (1 QTL) and 10 (3 QTL) were the most stable, detected in at least two experiments, and represented the most part of the phenotypic variation (27.7 to 54.3%) of resistance. The majority of QTL mapped were associated to specific severity evaluations/development stage of maize growth, and may explain the quantitative inheritance of resistance of tropical maize to ALB.

Key words:
Disease resistance; Colletotrichum graminicola; composite interval mapping; Zea mays; AUDPC

INTRODUCTION

Anthracnose leaf blight (ALB), caused by fungus Colletotrichum graminicola (Ces.) G. W. Wils., is present in all regions of maize cultivation, especially in hot and humid environments (Bergstrom and Nicholson 1999Bergstrom GC and Nicholson RL (1999) The biology of corn anthracnose. Plant Disease 83: 596-608.). The pathogen can infect different parts of the plant at several growth stages. Stalk rot and ALB are the most important forms of the disease (Badu-Apraku et al. 1987Badu-Apraku B, Gracen VE and Bergstrom GC (1987) A major gene for resistance to anthracnose leaf blight in maize. Plant Breeding 98: 194-199. ). The presence of ALB or stalk rot limits the high yield potential of susceptible genotypes (Matiello et al. 2013Matiello RR, Lopes MTG, Brunelli KR and Camargo LEA (2013) Comparison of yield damages of tropical maize hybrids caused by anthracnose stalk rot. Tropical Plant Pathology 38: 128-132., Rezende et al. 2004Rezende VF, Vencovsky R, Enrique F and Camargo LEA (2004) Mixed inheritance model for resistance to anthracnose leaf blight in maize. Crop Breeding and Applied Biotechnology 4: 115-122.). Smith (1976Smith DR (1976) Yield reduction in dent corn caused by Colletotrichum graminicola. Plant Disease 60: 967-970.) reported reduction in grain yield caused by ALB ranging from 19 to 28% in maize hybrids and lines, respectively. On the other hand, higher reductions are estimated with stalk rot, which can amount 40% yield losses (Matiello et al. 2013Matiello RR, Lopes MTG, Brunelli KR and Camargo LEA (2013) Comparison of yield damages of tropical maize hybrids caused by anthracnose stalk rot. Tropical Plant Pathology 38: 128-132.).

Genetic resistance for maize ALB can be considered a more efficient and less costly control method when compared to fungicide control (Coêlho et al. 2001Coêlho RMS, Silva HP, Brunelli KR and Camargo LEA (2001) Controle genético da antracnose foliar em milho. Fitopatologia Brasileira 26: 640-643.). However, the development of cultivars with genetic resistance to disease is costly and laborious, since it involves numerous selection cycles and favorable environmental conditions for the pathogen’s development, as well as for the expression of resistance in segregating populations. Thus, QTL mapping (Quantitative Trait Loci) to disease resistance using molecular markers may accelerate the development of resistant genotypes, maximizing the yield potential of crops by means of marker-assisted selection (Pozar et al. 2009Pozar G, Butruille D, Silva HD, McCuddin ZP and Penna JC (2009) Mapping and validation of quantitative trait loci for resistance to Cercospora zeae-maydis infection in tropical maize (Zea mays L). Theoretical and Applied Genetics 118: 553-564. ). The literature indicates that a few genes with additive and dominant gene action control resistance to ALB (Badu-Apraku et al. 1987Badu-Apraku B, Gracen VE and Bergstrom GC (1987) A major gene for resistance to anthracnose leaf blight in maize. Plant Breeding 98: 194-199. ). Rezende et al. (2004Rezende VF, Vencovsky R, Enrique F and Camargo LEA (2004) Mixed inheritance model for resistance to anthracnose leaf blight in maize. Crop Breeding and Applied Biotechnology 4: 115-122.) reported a major gene as well as genes with minor additive and dominant controlling the resistance.

Studies aiming to know the nature and magnitude of the effects of resistance genes are important to guide the breeding procedures in order to introduce new resistance alleles in susceptible germplasm, and maximize the use of genetic variability in populations under selection (Pozar et al. 2009Pozar G, Butruille D, Silva HD, McCuddin ZP and Penna JC (2009) Mapping and validation of quantitative trait loci for resistance to Cercospora zeae-maydis infection in tropical maize (Zea mays L). Theoretical and Applied Genetics 118: 553-564. ). Thus, determining the number, the nature of gene action, and the position of QTL in the maize consensus map can significantly contribute to the clarification of the genetic basis of resistance to ALB in tropical maize germplasm. In this sense, the objective of this study was to map and estimate the effects of resistance QTL to ALB in tropical maize germplasm in different environments and evaluation periods during the disease life cycle.

MATERIAL AND METHODS

Plant material

Inbred lines of tropical maize, belonging to the C. graminicola resistance breeding program of State University of Ponta Grossa, originated from south of Brazil maize landraces, were initially screened for stalk rot and ALB (Prochno et al. 2016Prochno HC, Coelho CJ, Romanek C, Silva DFG, Tasior D, Oliveira EAT, Gardingo JR and Matiello RR (2016) Genetic resistance of maize inbred lines to anthracnose leaf blight. Crop Breeding and Applied Biotechnology 16: 55-61.). The ALB contrasting inbred lines LR 04-2 (resistant) and LS 95-1 (susceptible) were crossed to obtain the segregating population of F2 generation. Individuals were selfed to generate the F2:3 progenies, which were evaluated for resistance to ALB in three field experiments.

Evaluation of maize resistance to anthracnose leaf blight

F2:3 maize progenies were evaluated in three experiments sown on 01/10/2012, 11/19/2013 and 01/17/2014, at the Farm School “Capão da Onça” (lat 25º 05’40” S, long 50º 03’ 13” W and alt 1017 m asl), Ponta Grossa, PR, Brazil. Treatments consisted of 121 F2:3 progenies plus the parents (LR 04-2 and LS 95-1) and F1 generation, which were used as experimental control. Experiments were carried out in a randomized block design with three replications. The plot consisted of a 3 m row, spaced 0.90 m between rows, with approximately 15 plants per plot.

The isolated of C. graminicola was given by Dow AgroSciences Ltda. (Jardinópolis, São Paulo), as culture medium discs form with fungus colonies. The multiplication of pathogen was realized in oat-agar culture medium (10 g of oat flour, 2.5 g of agar and 250 mL of distilled water), being maintained at room temperature on the lab bench, until complete sporulation of colonies. For inoculum preparation, 20 mL sterile distilled water were added to Petri dishes containing the sporulated colonies, followed by surface scraping in order to release conidia. The suspension was adjusted to 6 x 105 conidia mL-1 concentration with a Neubauer chamber. A drop of spreader Tween 80® was added to each liter of the conidial suspension. Plants were inoculated twice between the stages V6 and V7, by spraying 7 mL of the spore suspension in the plant whorl, using a knapsack sprayer calibrated at a constant pressure of 35 lbs pol-2, by compressed CO2.

The evaluation of maize progenies regarding resistance to ALB was carried out from the appearance of the first disease symptoms, at the fifteenth day after the first inoculation. Three severity evaluations were carried out at VT stage (tasseling), R2 stage (blister), and R3 stage (milk) (Ritchie and Hanway 1989Ritchie S and Hanway JJ (1989) How a corn plant develops Iowa State University of Science and Technology/Cooperative Extension Service Available at <Available at https://s10litemsuedu/res/msu/botonl/b_online/library/maize/wwwagiastateedu/departments/agronomy/corngrowshtml > Accessed on Jan 14, 2014.
https://s10litemsuedu/res/msu/botonl/b_o...
). The characterization of resistance of maize progenies to ALB was carried out by the rating scale (% severity) proposed by Silva et al. (1986Silva HP, Pereira AOP, Miranda Filho JB and Balmer E (1986) Inheritance of resistance to foliar anthracnose (Colletotrichum graminicola) in corn. Fitopatologia Brasileira 3: 30-37.), ranging from of 1 (highly resistant) to 6 (highly susceptible) (Figure 1). From the means of the scale grades of the three evaluations, was calculated the area under the disease progress curve (AUDPC). Afterwards, was carried out the frequency distribution analysis of maize progenies for AUDPC. The number of phenotypic classes (k) was estimated by the formula k=n, in which n refers to the total progenies (n = 121). The phenotypic range class (PRC) was determined by PRC=Rk, in which R is the range of the AUDPC found among the progenies. Phenotypic means of progenies for the 1st, 2nd, 3rd evaluations and for the AUDPC in the respective experiments were used for QTL mapping. To verify the distribution normality was applied Shapiro-Wilk test (SAS Institute 2015SAS Institute (2015) SAS user’s guide: version 9.4. SAS Institute Inc., Cary, 234p.).

Figure 1
Anthracnose leaf blight (Colletotrichum graminicola) symptoms. Recognition of score scale (1 to 6) used in field evaluation.

Molecular markers

Genomic DNA was extracted from leaves of individual plants of the F2 generation, of the inbred lines (LR 04-2 and LS 95-1), and of the F1 generation (LR 04-2 x LS 95-1), following the protocol of Hoisington et al. (1994Hoisington D, Khairallah M and Leon DG (1994) Laboratory protocols: CIMMYT applied molecular genetics laboratory. 3rd edn, CIMMYT, Mexico, 102p.). Eighty-eight SSR loci, distributed in 10 maize chromosomes, were amplified in the parental inbred lines in order to select polymorphic loci. SSR loci were selected from the Maize Genetics and Genomics Data Base - MaizeGDB (http://www.maizegdb.org). Polymerase chain reaction (PCR) was prepared in 0.2 mL microcentrifuge tubes containing: 1X buffer InvitrogrenTM; 2.0 mM MgCl2; 0.1 mM dNTP solution (100 mM, Amresco®); 0.2 µM of each forward and reverse primer; 0.75 U Taq DNA polymerase (5 U/µL, InvitrogenTM); and 20 ng DNA template for a total volume of 20 µL. The amplified samples were stained with 4 µL GelRed 0.1X plus loading buffer (1: 1), and separated by electrophoresis on 2% agarose gel. Of the 88 SSR loci, 29 were used to genotype the mapping population. The 121 individuals of the mapping population (F2) were genotyped for each polymorphic locus with codes. (1) Amplified fragment corresponding to the SSR allele from the resistant line (LR 04-2), (-1) amplified fragment corresponding to the SSR allele from the susceptible line (LS 95-1) and (0) presence of the two fragments corresponding to the alleles of the parental lines LR 04-2 and LS 95-1.

The amplification methodology of the AFLP marker was performed according to Vos et al. (1995Vos P, Hogers R, Bleeker M, Reijans M, van Lee T, Hornes M and Frijters A (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23: 4407-4414.). Initially, it was tested 40 combinations of the primers EcoRI and MseI in order to select those with the best amplification pattern, higher polymorphism between the parental lines and between the DNA bulks, according to the methodology of bulked segregant analysis (BSA) proposed by Michelmore et al. (1991Michelmore RW, Paran I and Kesseli RV (1991) Identification of markers linked to disease resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions using segregating populations. Proceedings of the National Academy of Science USA 88: 9828-9832.). Of the 40 primer combinations, 19 were selected for genotyping the mapping population: E32-M48, E32-M49, E32-M50, E32-M51, E32-M52, E32-M53, E32-M59, E32-M60, E35-M50, E35-M56, E40-M50, E40-M51, E40-M51, E40-M60, E42-M50, E42-M51, E42-M60, E44- M51, E44-M56 [such as the primers sequence in Keygene (2004Keygene NV (2004) Nomenclature of AFLP primer enzyme combinations. Available at <Available at http://wheatpwusdagov/ggpages/keygeneAFLPshtml >. Accessed on Apr 3, 2016.
http://wheatpwusdagov/ggpages/keygeneAFL...
)]. Only the polymorphic combinations of each EcoRI + MseI combination were genotyped in (1) presence and (0) absence.

Linkage analysis and composite interval mapping (CIM)

SSR and AFLP loci that presented expected Mendelian segregation (undistorted) by Chi-square at 5% were used for the construction of linkage map with the aid of the Mapmaker software version 3.0 (Lander et al. 1987Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE and Newburg L (1987) Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.). The linkage group construction was based on command “group” using a LOD of 3.0 (maximum likelihood method) and maximum recombination frequency of θ = 0.20. The recombination frequencies were converted on map distances by Haldane (1919Haldane JBS (1919) The combination of linkage values, and calculation of distance between the loci of linked factors. Journal of Genetics 8: 299-309.)’s mapping function. After the linkage groups were defined, the markers inside each group were ordered by “order” command with LOD higher than 3.0. To ensure the correct marker order, the “ripple” command was used.

Analyses of the QTL mapping were carried out using the means of the disease severity grades of the three evaluations and of the AUDPC of the 121 F2:3 maize progenies in the three experiments. The location of the QTL was carried out through the analysis by the composite interval mapping (CIM), using the QTL Cartographer ® software (Basten et al. 2003Basten CJ, Weir BS and Zeng BZ (2003) QTL cartographer: version 1.17. North Carolina University, Raleigh, 187p.). Linkage map was used for the QTL positioning. The QTL position, genetic effect, and phenotypic variation (partial correlation, %) were established at the 3.0 LOD peak.

RESULTS AND DISCUSSION

Resistance of progenies to anthracnose leaf blight

The analysis of frequency distribution confirmed the phenotypic contrast for resistance to ALB between the lines LR 04-2 and LS 95-1, regardless of the experimental year (Prochno et al. 2016Prochno HC, Coelho CJ, Romanek C, Silva DFG, Tasior D, Oliveira EAT, Gardingo JR and Matiello RR (2016) Genetic resistance of maize inbred lines to anthracnose leaf blight. Crop Breeding and Applied Biotechnology 16: 55-61.). The frequency distribution for AUDPC presented a normal distribution by Shapiro-Wilk test at 5% of probability. Also was observed an asymmetric pattern, evidencing a trend of F2:3 progenies to greater resistance to ALB in the three experiments, with higher frequency between the 2nd and 4th classes of AUDPC. In the three experiments, highly resistant maize progenies were found, similarly to the source of resistance LR 04-2 (Figure 2).

Figure 2
Distribution of the means of the F2:3 progenies of the cross LR 04-2 x LS 95-1 for the area under the disease progress curve (AUDPC), for the first (A), second (B) and third experiment (C). LR = resistant line, LS = susceptible line, and F1 = F1 generation.

Linkage map

Of the 413 polymorphic fragments (SSR and AFLP), only 54% with Mendelian segregation (undistorted) were used in the construction of the linkage map, avoiding errors in the position of marks on map and generate false positive associations (Liu 1998Liu HB (1998) Statistical genomics, linkage, mapping and QTL analysis. CRC, Boca Raton, 611p. ). The 11 SSR loci allowed co-locating AFLP fragments in the maize consensus map by the linkage analysis. Results allowed assigning chromosomic reference to the ten maize linkage clusters by the presence of at least one SSR locus per chromosome (Figure 3). The range of the length of the linkage clusters (107.5 to 244.3 cM) and the total length of the linkage map (1710.1 cM) are in agreement with other genetic maps of tropical maize (Mangolin et al. 2004Mangolin CA, Souza Jr CL, Garcia AAF, Garcia AF, Sibov ST and Souza AP (2004) Mapping QTLs for kernel oil content in a tropical maize population. Euphytica 137: 251-259.). The linkage map of Castiglioni et al. (1999Castiglioni P, Ajmone-Marsan P, van Wijk R and Motto M (1999) AFLP markers in a molecular linkage map of maize: codominant scoring and linkage group distribution. Theoretical and Applied Genetics 99: 425-431.) demonstrated greater coverage of the genome, with 2057 cM, and with markers distributed every 6.6 cM. This result can be attributed to the greater number of individuals genotyped (229 families), enabling larger gametes sampling, and consequently greater probability in the detection of recombination events. The mean distance between the markers obtained in the present study was 11.4 cM, which shows good coverage of the genome analyzed in the segregating population (LR 04-2 x LS 95-1).

Figure 3
LOD profiles and 1-LOD and 2-LOD support intervals for E2 (2nd evaluation), E3 (3rd evaluation) and AUDPC (area under disease progress curve) QTL on chromosome 1, 8, 9, and 10. Only QTL present in at least two experiments were represented. The dotted line at LOD 3.0 represents the LOD threshold.

QTL mapping

The composite interval mapping (CIM) allowed for the mapping of a large number of genomic regions (17 QTL) associated with resistance to ALB. In some intervals, coincident QTL were mapped for the different forms of disease quantification, as well as between the evaluation environments (Table 1). The absence of coincident QTL in the different evaluation environments characterizes the occurrence of QTL x environment interactions, since the mapped QTL at a given interval cannot be expressed in other evaluation environment. Higher accuracy of QTL effects by the CIM is expected for several evaluation environments, since the phenotypic values of progenies in these environments are simultaneously taken into consideration, enabling the quantification of the QTL x environment interactions (Jiang and Zeng 1995Jiang C and Zeng Z (1995) Multiple trait analysis of genetics mapping for quantitative trait loci. Genetics 140: 1111-1127.).

Table 1
LOD score, estimates of additive effect, and proportion of phenotypic variation explained by the QTL mapped by the mapping interval composite methodology

There are few published studies on QTL mapping to ALB in maize. On the other hand, there are several studies on stalk rot; however, they are not conclusive. The literature shows wide divergence in the number of genes that control resistance to stalk rot in maize. Carson and Hooker (1982Carson ML and Hooker AL (1982) Reciprocal translocation testcross analysis of genes for anthracnose stalk rot resistance in a corn inbred line. Phytopathology 72: 175-177.) mapped genes or gene units on chromosomes 1, 4, 6 and 8 using the reciprocal translocation technique. However Jung et al. (1994Jung M, Weldekidan T, Schaff D, Paterson A, Tingey S and Hawk J (1994) Generation means analysis and quantitative trait locus mapping of anthracnose stalk rot genes in maize. Theoretical and Applied Genetics 89: 413-418.), by using the molecular marker RFLP, identified only one genomic region located on chromosome 4 with strong association to a QTL responsible for over 50% of the phenotypic variation in resistance to anthracnose.

In recent years, several studies have been carried out aimed at identifying genomic regions associated with pathogen resistance alleles in agricultural species (Wisser et al. 2006Wisser RJ, Balint-Kurti PJ and Nelson RJ (2006) The genetic architecture of disease resistance in maize: a synthesis of published studies. Phytopathology 96: 120-129.). For McMullen and Simcox (1995McMullen MD and Simcox KD (1995) Genomic organization of disease and insect resistance genes in maize. Molecular Plant Microbe 8: 811-815.), loci that determine disease resistance are not randomly distributed in the genome, but in the form of clusters. Often the same chromosomal segments have been associated with resistance to multiple pathogens in maize. For instance, on chromosome 3, in bins 3.04 and 3.05, QTL were mapped for resistance: to Puccinia sorghi, Cercospora zea-maydis, Cochliobolus heterostrophus, and Exserohilum turcicum (Wisser et al. 2006Wisser RJ, Balint-Kurti PJ and Nelson RJ (2006) The genetic architecture of disease resistance in maize: a synthesis of published studies. Phytopathology 96: 120-129.). This fact suggests that phytochemical compounds which stimulate resistance to different diseases can be produced by the same QTL, although it is possible the existence of QTL specific for a given pathosystem in maize (McMullen and Simcox 1995McMullen MD and Simcox KD (1995) Genomic organization of disease and insect resistance genes in maize. Molecular Plant Microbe 8: 811-815.).

Prior knowledge on different QTL that have already been mapped in the 10 maize chromosomes/bin (chromosome splitting) enables establishing possible relations between the QTL to ALB mapped in this work. Thus, the QTL 1 of Chr 1 can be analyzed in relation to the position of the interval of the marker Bnlg1007, located in the bin 1.02 (Table 1 and Figure 3). The distance between the interval to the marker Bnlg1007 is between 109 cM and 120.5 cM, which is approximately six bins, since one bin corresponds to approximately 20 cM (McMullen and Simcox 1995McMullen MD and Simcox KD (1995) Genomic organization of disease and insect resistance genes in maize. Molecular Plant Microbe 8: 811-815.). Thus, the QTL would be located near the bin 1.08, which is a region where QTL to stalk rot caused by Giberella zeae (Pé et al. 1993Pè ME, Gianfranceschi L, Taramino G, Tarchini R, Angelini P, Dani M and Binelli G (1993) Mapping quantitative trait loci (QTL) for resistance to Gibberella zeae infection in maize. Molecular Genetics 241: 11-16.) and Cochliobolus heterostrophus (Balint-Kurti and Carson 2006Balint-Kurti PJ and Carson ML (2006) Analysis of quantitative trait loci for resistance to southern leaf blight in juvenile maize. Phytopathology 96: 221-225.) had already been mapped.

The position of the QTL mapped on chromosome 2 (QTL 2), can be related to the locus Bnlg125 (bin 2.02). The distance between the interval and the Bnlg125 is between 68.7 cM and 82.8 cM, corresponding to approximately four bins, and thus it is possible that this QTL is near the bin 2.06 (Table 1). In this region, QTL have been mapped for important foliar diseases, such as Exserohilum turcicum (Welz et al. 1999aWelz HG, Schechert AW and Geiger HH (1999a) Dynamic gene action at QTLs for resistance to Setosphaeria turcica in maize. Theoretical and Applied Genetics 98: 1036-1045.) and Cercospora zeae-maydis (Lehmensiek et al. 2001Lehmensiek A, Esterhuizen AM, van Staden D, Nelson SW and Retief AE (2001) Genetic mapping of gray leaf spot (GLS) resistance genes in maize. Theoretical and Applied Genetics 103: 797-803.). On Chr 3 two QTL (QTL 3 and 4) were mapped on 2nd evaluation at 2nd experiment explaining from 75 to 90.6% of phenotypic variation (Table 1).

Four QTL were mapped on Chr 4 (intervals E35M60_87 - E32M60_185, E32M52_73 - E44M51_84, Umc1511 - E32M53_434, and E32M53_434 - E44M51_135), which demonstrated specificity to severity evaluation or experiments (Table 1). To infer the approximate position of the QTL 6, was taken into account the position of this interval in relation to the locus Umc1511 (bin 4.05). The markers of this interval are at 72.8 and 53.3 cM, representing approximately three to four bins. According to these relations, this QTL may be located near the bin 4.01/4.02. In this chromosome, QTL to stalk rot caused by Giberella zeae was mapped in bin 4.01 (Pé et al. 1993Pè ME, Gianfranceschi L, Taramino G, Tarchini R, Angelini P, Dani M and Binelli G (1993) Mapping quantitative trait loci (QTL) for resistance to Gibberella zeae infection in maize. Molecular Genetics 241: 11-16.), and by Colletotrichum graminicola next to bin 4.08 (Jung et al. 1994Jung M, Weldekidan T, Schaff D, Paterson A, Tingey S and Hawk J (1994) Generation means analysis and quantitative trait locus mapping of anthracnose stalk rot genes in maize. Theoretical and Applied Genetics 89: 413-418., Broglie et al. 2011Broglie KE, Butler KH, Butruille MG, Conceiçao AS, Frey TJ, Hawk JA, Jaqueth JS, Jones ES, Multani DS and Wolters PJCC (2011) Method for identifying maize plants with Rcg1 gene conferring resistance to Colletotrichum infection. US Patent 8062847 B2. Date 29/11/2011.), as well as to foliar lesions caused by Phaeosphaeria maydis (Moreira et al. 2009Moreira JUV, Bento DAV, Souza AP and Souza Jr CL (2009) QTL mapping for reaction to Phaeosphaeria leaf spot in a tropical maize population. Theoretical and Applied Genetics 119: 1361-1369.) and Cercospora zeae-maydis (Lehmensiek et al. 2001Lehmensiek A, Esterhuizen AM, van Staden D, Nelson SW and Retief AE (2001) Genetic mapping of gray leaf spot (GLS) resistance genes in maize. Theoretical and Applied Genetics 103: 797-803.). In addition, the QTL 7 is possibly next to bins 4.05 or 4.06, which are genomic regions known for QTL to Cercospora leaf spot (Bubeck et al. 1993Bubeck DM, Yue YG, Xiang ZX, Stromberg EL and Rufener GK (1993) Quantitative trait loci controlling resistance to gray leaf spot in maize. Crop Science 33: 838-847.) and northern leaf blight in maize (Welz et al. 1999bWelz HG, Xia XC, Bassetti P, Melchinger AE and Lübberstedt T (1999b) QTLs for resistance to Setosphaeria turcica in an early maturing Dent x Flint maize population. Theoretical and Applied Genetics 99: 649-65.).

The CIM analysis mapped a QTL on Chr 5 on markers interval E32M48_532 - E32M50_139, which explain 61.8% of phenotypic variance of resistance to ALB only on 2nd evaluation at 2nd experiment (Table 1). On Chr 8 were mapped three QTL. From these, the QTL 11 was the most stable, being mapped at the three experiments, responsible for the major part of resistance (23.4 to 94.0%) (Table 1 and Figure 3). This QTL is located at a distance of 33.4 cM to 50.2 cM for the Phi015 microsatellite locus (8.03), close to the bins 8.05/8.06. The region of Chr 8 that comprises these bins is known to be associated with QTL and resistance genes to various pathogens in maize. QTL in this region were mapped in different populations for resistance to Exserohilum turcicum (Welz et al. 1999aWelz HG, Schechert AW and Geiger HH (1999a) Dynamic gene action at QTLs for resistance to Setosphaeria turcica in maize. Theoretical and Applied Genetics 98: 1036-1045., b, Zwonitzer et al. 2010Zwonitzer JC, Coles ND, Krakowsky MD, Arellano C, Holland JB and McMullen MD (2010) Mapping resistance quantitative trait loci for three foliar diseases in a maize recombinant inbred line population-evidence for multiple disease resistance. Phytopathology 100: 72-79.), Cochliobolus heterostrophus (Balint-Kurti et al. 2008Balint-Kurti Balint-Kurti PJ, Zwonitzer JC, Pè ME, Pea G, Lee M and Cardinal AJ (2008) Identification of quantitative trait loci for resistance to southern leaf blight and days to anthesis in two maize recombinant inbred line populations. Phytopathology 98: 315-320.), Cercospora zeae-maydis (Bubeck et al. 1993Bubeck DM, Yue YG, Xiang ZX, Stromberg EL and Rufener GK (1993) Quantitative trait loci controlling resistance to gray leaf spot in maize. Crop Science 33: 838-847.), Puccinia sorghi (Brown et al. 2001Brown AF, Juvik JA and JK Pataky (2001) Quantitative trait loci in sweet corn associated with partial resistance to Stewart’s wilt, northern corn leaf blight, and common rust. Phytopathology 91: 293-300. , Kerns et al. 1999Kerns MR, Dudley JW and Rufener GK (1999) QTL for resistance to common rust and smut in maize. Maydica 44: 37-45.), Ustilago maydis (Lüebberstedt et al. 1998Lüebberstedt T, Klein D and Melchinger AE (1998) Comparative QTL mapping of resistance to Ustilago maydis across four populations of European flint-maize. Theoretical and Applied Genetics 97: 1321-1330.), and to aflatoxin accumulation in maize ears caused by Aspergillus flavus (Paul et al. 2003Paul C, Naidoo G, Forbes A, Mikkilineni V, White D and Rocheford T (2003) Quantitative trait loci for low aflatoxin production in two related maize populations. Theoretical and Applied Genetics 107: 263-270.).

From two QTL mapped on Chr 9, the QTL 13 was the most important for resistance in all study environments, presenting significant additive effect to reduce the disease severity (- 0.90 to -26.79). These QTL is located at a mean distance of 47.5 cM from the Phi065 marker (9.03) (Table 1 and Figure 3). Thus, this QTL would be located around the bins 9.05/9.06. In this bin, it was mapped QTL for Exserohilum turcicum (Brown et al. 2001Brown AF, Juvik JA and JK Pataky (2001) Quantitative trait loci in sweet corn associated with partial resistance to Stewart’s wilt, northern corn leaf blight, and common rust. Phytopathology 91: 293-300. ), and in the regions 9.03/9.04, it was mapped QTL for Cochliobolus heterostrophus (Zwonitzer et al. 2010Zwonitzer JC, Coles ND, Krakowsky MD, Arellano C, Holland JB and McMullen MD (2010) Mapping resistance quantitative trait loci for three foliar diseases in a maize recombinant inbred line population-evidence for multiple disease resistance. Phytopathology 100: 72-79.).

The QTL 15 on Chr 10 has the SSR Umc1084 (10.07) marker as reference (Table 1 and Figure 3). The mean distance of the interval for the SSR is 148.2 cM, which is approximately 6 bins. Therefore, the QTL is possibly located near the bin 10.01, which is the region where QTL were mapped to common rust (Kerns et al. 1999Kerns MR, Dudley JW and Rufener GK (1999) QTL for resistance to common rust and smut in maize. Maydica 44: 37-45.). The QTL 17 (10.07) was the most stable, because was associated to resistance in 8 from 12 evaluations (considering the three experiments). Since there are no reports on other QTL in the region, possibly the resistance locus of bin 10.07 is specific to ALB in maize. Additionally, in this chromosome, it was detected other resistance loci, such as in bin 10.05/10.06 to common rust (Lüebberstedt et al. 1998Lüebberstedt T, Klein D and Melchinger AE (1998) Comparative QTL mapping of resistance to Ustilago maydis across four populations of European flint-maize. Theoretical and Applied Genetics 97: 1321-1330.), to Cercospora leaf spot (Bubeck et al. 1993Bubeck DM, Yue YG, Xiang ZX, Stromberg EL and Rufener GK (1993) Quantitative trait loci controlling resistance to gray leaf spot in maize. Crop Science 33: 838-847.), and to stalk rot caused by Giberella zea in 10.05 (Pè et al. 1993Pè ME, Gianfranceschi L, Taramino G, Tarchini R, Angelini P, Dani M and Binelli G (1993) Mapping quantitative trait loci (QTL) for resistance to Gibberella zeae infection in maize. Molecular Genetics 241: 11-16.). Other QTL (16) was mapped on this chromosome, responsible from 29.6 to 52.1% of ALB resistance, highlighted with negative additive effect.

In order to use efficiently a scheme of selection assisted by molecular markers in a breeding program, it is necessary to have markers strongly associated with the QTL of interest, which is a pronounced effect on the phenotypic expression, and stable for the evaluation environments. In this study, it was mapped four stable QTL for the different evaluation environments for AUDPC on Chr 9 and 10 (Table 1 and Figure 3). These QTL may be strong candidates for assisted selection schemes for resistance to ALB in tropical maize germplasm. Tropical maize populations have broad genetic basis compared with those of temperate climate zones. Besides, tropical areas are more likely to undergo environmental stress than temperate areas (Ribaut et al. 1997Ribaut JM, Jiang C and Gonzalez DL (1997) Identification of quantitative trait loci under drought condition in tropical maize 2 Yield components and marker-assisted selection strategies. Theoretical and Applied Genetics 94: 887-896.). Thus, QTL mapping in tropical genotypes enabled identifying new genomic regions and resistance alleles, which are possibly not yet known to the scientific community. In Brazil, this is the first report of quantitative inheritance to ALB resistance from tropical maize germplasm. Possibly the wide genetic base of this germplasm would explain the large number of QTL for resistance to ALB (Prochno et al. 2016Prochno HC, Coelho CJ, Romanek C, Silva DFG, Tasior D, Oliveira EAT, Gardingo JR and Matiello RR (2016) Genetic resistance of maize inbred lines to anthracnose leaf blight. Crop Breeding and Applied Biotechnology 16: 55-61.).

Interactions of QTL x severity evaluations can be explained by climatic differences of the 1st and 3rd experiment in relation to the 2nd field experiment. High relative humidity / temperature conditions and higher concentration of inoculum of C. graminicola in the experimental areas of the 1st and 3rd experiments enabled the CIM analysis to the most same QTL to ALB resistance in both experiments. Although the AUDPC use is more efficient in relation to specific quantifications of the disease, its application in breeding programs is too restrictive by difficulty of performing several disease evaluations (at least three) in the field (Lopes et al. 2011Lopes MTG, Vieira MLC, Lopes R, Brunelli K, Matiello RR, Silva HP and Camargo LEA (2011) Progeny evaluation for resistance to Phaeosphaeria leaf spot in tropical maize. Canadian Journal of Plant Pathology 33: 49-53.). Thus, the identification of the ideal time for severity evaluation, which enables to adequately represent the reactions of different genotypes during the development of the epidemy could be the better strategy for selecting genotypes with high genetic resistance to ALB in this pathosystem. Our results demonstrated that the ALB evaluation from R2 (Blister) stage on second growing season at South of Brazil, enabled the better genetic resistance discrimination between individuals of segregating population (LR 04-2 x LS 95-1), being confirmed by similarity of results from QTL mapped for AUDPC in relation to observed for 2nd evaluation. Thus, to improve the efficiency on selection of ALB resistant genotypes by South of Brazil maize breeding programs we recommend at least one evaluation at R2 stage in segregating populations inoculated with C. graminicola.

ACKNOWLEDGEMENTS

Thanks are due to the Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) for the Research Productivity Grant to the corresponding author.

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Publication Dates

  • Publication in this collection
    Dec 2017

History

  • Received
    28 Nov 2016
  • Accepted
    25 May 2017
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