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Factors that affect the quality of DNA extracted from biological samples stored in paraffin blocks

Technological and methodological advances in molecular biology have enabled the obtainment of DNA from paraffin embedded tissue, thus allowing the use of extensive pathological archive sources and samples of uncommon diseases in retrospective studies. The aim of this work was to carry out a brief review of some factors inherent in the quality of product from paraffin embedded material. The processes involved in the pre-fixation, fixation and post-fixation phases have several aspects that may result in unsatisfactory final products. In the pre-fixation phase, biochemical changes influence the preservation of macromolecules. The molecular changes caused by fixation, an attempt to prevent cell autolysis, may be a limiting factor at the time of DNA extraction. The quality of DNA obtained in the first two phases is regarded important for post-fixation procedures (DNA extraction and purification). In the literature there are several protocols whose steps can be modified to obtain DNA from paraffin embedded material. Therefore, the understanding of reactions at each stage is important in order to solve or minimize problems that interfere in the quality of DNA macromolecules.

Tissue; Paraffin; DNA; Formal; Quality


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