v1_gli |
|
glucose transport in/out via diffusion reversible |
GLC_x -> GLC |
D-glucose_out ->D-glucose |
|
|
|
v2_o2 |
|
O2 transport via diffusion |
O2_x -> O2 |
Oxygen_out <=> Oxygen |
|
|
|
v3_co2 |
|
CO2 transport via diffusion |
CO2_x <-> CO2 |
Carbon dioxide_out <=>Carbon dioxide |
|
|
|
v4_bio |
|
biomass transport out |
BIOMASS -> BIOMASS_x |
biomass -> biomass_out |
|
|
|
v5_cell |
|
cellulose transport out |
CELL -> CELL_x |
cellulose ->Cellulose_out |
|
|
|
v6_mann |
|
mannitol transport in/out via diffusion reversible |
MANN_x -> MANN |
mannitol_out-> mannitol |
|
|
|
v7_nh4 |
|
nitrogen transport |
NH4_x <-> NH4 |
ammonium_out<=> ammonium |
|
|
|
v8_glyc |
|
glycerol transport in/out via diffusion reversible |
GLYC_x -> GLYC |
Glycerol_out -> Glycerol |
|
|
|
v9_h2o |
|
water transport |
H2O_x <-> H2O |
water_out <-> water |
|
|
|
v10_glcn |
|
gluconate - gluconic acid transport |
GLCN -> GLCN_x |
Gluconate -> Gluconate_out |
|
|
|
v11_h |
|
proton transport |
H_x <-> H |
hidrogen_out <-> hidrogen |
|
|
|
v12_pi |
|
phosphate transport |
PI_x + ATP + H2O -> PI + ADP + H |
phosphate_out + atp + water <-> phosphate + adp + proton |
|
|
|
v13 |
R00299 |
glucokinase |
GLC + ATP -> ADP + G6P |
ATP + D-glucose <->ADP + D-Glucose 6-phosphate |
2.7.1.2 |
GXY_05501, GXY_13683(putative) |
Glycolysis/Gluconeogenesis |
v14 |
R00741 |
phosphoglucoisomerase |
G6P <-> F6P |
D-Glucose 6-phosphate <=> D-Fructose 6-phosphate |
5.3.1.9 |
GXY_02166 |
Glycolysis/Gluconeogenesis |
v15 |
R00762 |
fructose difosfatos |
FDP + H2O -> F6P + PI |
Fructose 1,6-bisphosphate + H2O => D-Fructose 6-phosphate + Orthophosphate |
3.1.3.11 |
GXY_08300 (glpX) |
Glycolysis/Gluconeogenesis |
v16 |
R01068 |
fructose-bisphosphate aldolase |
FDP <-> DHAP + G3P |
Fructose 1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate |
4.1.2.13 |
GXY_08305, GXY_09124 |
Glycolysis/Gluconeogenesis |
v17 |
R01015 |
triosephosphate isomerase |
DHAP <-> G3P |
Glycerone phosphate<-> D-Glyceraldehyde 3-phosphate |
5.3.1.1 |
GXY_10284 |
Glycolysis/Gluconeogenesis |
v18 |
R01061 |
glyceraldehyde 3-phosphate dehydrogenase |
G3P + NAD + PI -> 13-DPG + NADH_x + H |
D-Glyceraldehyde 3-phosphate + NAD+ + Orthophosphate<=> 3-Phospho-D-glyceroyl phosphate + NADH + H+ |
1.2.1.12 |
GXY_04003 |
Glycolysis/Gluconeogenesis |
v19 |
R01512 |
phosphoglycerate kinase |
13-DPG + ADP + PI <-> ATP + 3-PG |
3-Phospho-D-glyceroyl phosphate + ADP <-> ATP + 3-Phospho-D-glycerate |
2.7.2.3 |
GXY_03998 (pgk) |
Glycolysis/Gluconeogenesis |
v20 |
R01518 |
phosphoglycerate mutase |
3-PG <-> 2-PG |
3-Phospho-D-glycerate <=> 2-Phospho-D-glycerate |
5.4.2.1 |
GXY_02671,GXY_12768 |
Glycolysis/Gluconeogenesis |
v21 |
R00658 |
phosphopyruvate hydratase/enolase |
2-PG <-> PEP + H2O |
2-Phospho-D-glycerate <=> Phosphoenolpyruvate + H2O |
4.2.1.11 |
GXY_10254 (eno) |
Glycolysis/Gluconeogenesis |
v22 |
R00200 |
pyruvate kinase |
PEP + ADP + H -> ATP + PYR |
Phosphoenolpyruvate + ADP => ATP + Pyruvate |
2.7.1.40 |
GXY_00359 |
Glycolysis/Gluconeogenesis |
|
|
|
|
|
|
|
|
v23 |
R00209 |
pyruvate dehydrogenase complex |
PYR + NAD + COA -> ACCOA_x + NADH_x + CO2 |
Pyruvate + NAD+ + CoenzimaA<=> Acetyl-CoA + CO2 + NADH + H+ |
(2.3.1.12 and 1.8.1.4 and 1.2.4.1) |
(GXY_16242 OR GXY_10329 OR GXY_07680) - (GXY_03931 OR(GXY_03931 AND GXY_03943) - (GXY_15912 OR (ilvH AND GXY_00049) OR (GXY_10324 AND GXY_10319) OR (GXY_13548 OR GXY_15937) |
Glycolysis/Gluconeogenesis |
v24 |
R00206 |
pyruvate phosphate dikinase |
PYR + ATP + PI -> AMP + PEP + PPI |
ATP + Pyruvate + Orthophosphate <=> AMP + Phosphoenolpyruvate + Diphosphate |
2.7.9.1 |
GXY_08205 |
Glycolysis/Gluconeogenesis |
v25 |
R00217 |
oxaloacetate decarboxylase |
OAA + ADP + PI -> PYR + ATP + CO2 |
Oxaloacetate + ADP + phosphate -> pyruvate + ATP + CO2 |
4.1.1.3 |
|
Glycolysis/Gluconeogenesis |
v26 |
R00345 |
phosphoenolpyruvate carboxylase |
PEP + H2O + CO2 -> OAA + PI + H |
Phosphoenolpyruvate + H2O + CO2 -> + Oxaloacetate + Orthophosphate |
4.1.1.31 |
GXY_12143 |
Glycolysis/Gluconeogenesis |
v27 |
R08639 |
phosphoglucomutase |
G6P -> G1P |
D-Glucose 6-phosphate -> D-Glucose 1-phosphate |
5.4.2.2 |
GXY_09809 |
Glycolysis/Gluconeogenesis |
v28 |
R00289 |
uridine glucose pyrophosphorylase |
G1P + UTP + H -> UDPG + PPI |
D-Glucose 1-phosphate + UTP + H <=> UDP-glucose + Diphosphate |
2.7.7.9 |
GXY_10109 |
Starch and sucrose metabolism |
v29 |
R02889 |
cellulose - UDP forming |
UDPG -> UDP + CELL |
UDP-glucose-> UDP + Cellulose |
2.4.1.12 |
GXY_04277, GXY_08869 |
Starch and sucrose metabolism |
v30 |
|
|
GLC + Q8 + H2O -> GLCN + Q8H2 |
D-Glucose + Ubiquinone + H2O => Gluconate + Ubiquinol |
|
|
|
v31 |
R01737 |
gluconokinase/gluconate dehydrogenase |
GLCN + ATP -> ADP + 6-PGC + H |
D-Gluconic acid/gluconate + atp ->ADP + 6-Phospho-D-gluconate |
2.7.1.12 |
GXY_02201,GXY_12403 |
pentose phosphate |
v32 |
R00835 |
glucose-6-phosphate dehydrogenase |
G6P + NADP_x <-> 6-PGL + NADPH |
D-Glucose 6-phosphate + NADP+ <=> D-Glucono-1,5-lactone 6-phosphate + NADPH + H+ |
1.1.1.49 |
GXY_01616,GXY_02176,GXY_11509 |
pentose phosphate |
v33 |
R02035 |
6-phosphogluconolactonase |
6-PGL + H2O -> 6-PGC |
D-Glucono-1,5-lactone 6-phosphate + H2O => 6-Phospho-D-gluconate |
3.1.1.31 |
GXY_02191,GXY_10154 |
pentose phosphate |
v34 |
R01528 |
6-phosphogluconate dehydrogenase |
6-PGC + NADP_x -> RU5P + CO2 + NADPH |
6-Phospho-D-gluconate + NADP+ -> D-Ribulose 5-phosphate + CO2 + NADPH |
1.1.1.44 |
GXY_04594 |
pentose phosphate |
v35 |
R02036 |
phosphogluconate dehydratase |
6-PGC -> 2-DDG6P + H2O |
6-Phospho-D-gluconate => 2-Dehydro-3-deoxy-6-phospho-D-gluconate + H2O |
4.2.1.12 |
GXY_03863 |
pentose phosphate |
v36 |
R05605 |
2-dehydro-3-deoxyphosphogluconate aldolase |
2-DDG6P -> G3P + PYR |
2-Dehydro-3-deoxy-6-phospho-D-gluconate => D-Glyceraldehyde 3-phosphate + Pyruvate |
4.1.2.14 |
GXY_03858 |
pentose phosphate |
v37 |
R01529 |
epimerase |
RU5P <-> XU5P |
D-Ribulose 5-phosphate <=> D-Xylulose 5-phosphate |
5.1.3.1 |
|
pentose phosphate |
v38 |
R01056 |
isomerase |
RU5P <-> R5P |
D-Ribulose 5-phosphate<=> D-Ribose 5-phosphate |
5.3.1.6 |
GXY_02196 |
pentose phosphate |
v39 |
R01827 |
transaldolase |
S7P + G3P <-> E4P + F6P |
Sedoheptulose 7-phosphate + D-Glyceraldehyde 3-phosphate => D-Erythrose 4-phosphate + D-Fructose 6-phosphate |
2.2.1.2 |
GXY_02166 |
pentose phosphate |
v40 |
R01641 |
transketolase |
R5P + XU5P <-> S7P + G3P |
D-Ribose 5-phosphate + D-Xylulose 5-phosphate =>Sedoheptulose 7-phosphate + D-Glyceraldehyde 3-phosphate |
2.2.1.1 |
GXY_02161,GXY_04008 |
pentose phosphate |
v41 |
R01067 |
transketolase |
E4P + XU5P <-> F6P + G3P |
D-Erythrose 4-phosphate + D-Xylulose 5-phosphate <=>D-Fructose 6-phosphate + D-Glyceraldehyde 3-phosphate |
2.2.1.1 |
GXY_02161,GXY_04008 |
pentose phosphate |
v42 |
R00868 |
mannitol 2-dehydrogenase |
MANN + NAD <-> FRU + NADH_x + H |
Mannitol + NAD+ <=> D-Fructose + NADH + H+ |
1.1.1.67 |
GXY_02161 |
manitol |
v43 |
R00760 |
fructokinase |
FRU + ATP -> ADP + F6P + H |
ATP + D-Fructose => ADP + D-Fructose 6-phosphate |
2.7.1.4 |
GXY_10569 |
|
v44 |
R00847 |
glycerol kinase |
GLYC + ATP -> ADP + GLYC3P |
Glycerol + ATP=> ADP + Glycerol 3-phosphate |
2.7.1.30 |
GXY_08295 |
Glycerophospholipid metabolism |
v45 |
R00842 |
glycerol-3-phosphate dehydrogenase |
GLYC3P + NAD <-> DHAP + NADH_x + H |
Glycerol 3-phosphate + NAD<=> Glycerone phosphate + NADH |
1.1.1.94 |
GXY_04966 |
Glycerophospholipid metabolism |
v46 |
R00351 |
citrate synthase |
ACCOA_x + H2O + OAA -> CIT + COA + H |
Acetyl-CoA + H2O + Oxaloacetate=> Citrate + CoA |
2.3.3.1 |
GXY_10922 |
TCA cycle |
v47 |
R01325 |
aconitate hydratase 1 |
CIT -> ACON-C + H2O |
Citrate => cis-Aconitate + H2O |
4.2.1.3 |
GXY_01403 |
TCA cycle |
v48 |
R01900 |
aconitate hydratase 2 |
ACON-C + H2O <-> ICIT |
cis-Aconitate + H2O <=> Isocitrate |
4.2.1.3 |
GXY_01403 |
TCA cycle |
v49 |
R00267 |
isocitrate dehydrogenase |
ICIT + NADP_x <-> AKG + CO2 + NADPH + H |
Isocitrate + NADP+ <=> 2-Oxoglutarate + CO2 + NADPH + H+ |
1.1.1.42 |
GXY_08180 |
TCA cycle |
v50 |
R01197 |
2-oxoglutarate synthase |
AKG + NAD + COA -> SUCCOA + NADH_x + CO2 |
|
1.2.7.3 |
|
TCA cycle |
v51 |
R00405 |
succinyl-CoA synthetase |
SUCCOA + ADP + PI <-> ATP + SUCC + COA |
ADP + orthophosphate + succinyl-CoA => ATP + succinate + CoA |
6.2.1.5 |
GXY_05758, GXY_05763 |
TCA cycle |
v52 |
R00408 |
Succinate dehydrogenase |
SUCC + FAD <-> FADH2 + FUM |
Succinate + FAD <=> FADH2 + Fumarate |
1.3.99.1 |
GXY_01598 - sdhB |
TCA cycle |
v53 |
R01082 |
fumarase |
FUM + H2O <-> MAL-L |
Fumarate + H2O<-> (S)-Malate |
4.2.1.2 |
GXY_13863, GXY_02031 |
TCA cycle |
v54 |
R00342 |
malate dehydrogenase |
MAL-L + NAD <-> NADH_x + OAA + H |
(S)-Malate + NAD+ => Oxaloacetate + NADH2 + H+ |
1.1.1.37 |
|
TCA cycle |
v55 |
R00253 |
glutamine synthetase |
ATP + GLU-L + NH4 -> ADP + PI + GLN-L + H |
ATP + L-Glutamate + NH4 -> ADP + Orthophosphate + L-Glutamine |
6.3.1.2 |
GXY_02336 |
nitrogen metabolism |
v56 |
R00256 |
glutaminase |
GLN-L + H2O -> GLU-L + NH4 |
L-Glutamine + Water => L-Glutamate + NH4 |
3.5.1.2 |
GXY_12733; carB |
nitrogen metabolism |
v57 |
R00114 |
glutamate synthase |
GLN-L + AKG + NADPH + H -> 2GLU-L + NADP_x |
L-Glutamine + 2-Oxoglutarate + NADPH + H+ => L-Glutamate + NADP+ |
1.4.1.13 |
GXY_04844, gxy_04839 |
nitrogen metabolism |
v58 |
|
|
GLN-L_x + H_x <-> GLN-L + H |
L-Glutamine_out + proton => L-Glutamine + proton |
|
|
transport |
v59 |
|
|
GLU-L_x + H_x <-> GLU-L + H |
L-Glutamate_out + proton => L-Glutamate + proton |
|
|
transport |
v60 |
|
adenylate kinase |
AMP + ATP <-> 2ADP |
AMP + ATP <-> 2ADP |
2.7.4.3 |
GXY_12943 |
purine metabolism |
v61 |
|
ATP maintenance requirement |
ATP + H2O -> ADP + PI + H |
ATP + H2O -> ADP + PI + H |
|
|
|
v62 |
|
ATP synthase - Complex V |
ADP + PI + 4H_x -> ATP + H2O + 3H |
ADP + PI + 4H_x -> ATP + H2O + 3H |
3.6.3.14 |
GXY_00619, GXY_00624, GXY_00629, GXY_00634, GXY_15649, GXY_15672, GXY_15677, GXY_15682 |
oxidative phosphorilation |
v63 |
|
inorganic diphosphatase |
PPI + H2O -> 2PI + H |
Diphosphate + H2O -> 2 ortophosphate + H |
3.6.1.1 |
GXY_01896 |
|
v64 |
|
NAD transhydrogenase |
NAD + NADPH -> NADH_x + NADP_x |
NAD + NADPH + H-> NADH + NADP+H_out |
1.6.1.2 |
|
|
v65 |
|
nucleoside-triphosphatase (UTP) |
UTP + H2O -> UDP + H + PI |
UTP + H2O -> UDP + H + PI |
3.6.1.5 |
|
purine metabolism |
v66 |
|
nucleoside-diphosphate kinase (ATP:UDP) |
ATP + UDP -> ADP + UTP |
ATP + UDP -> ADP + UTP |
2.7.4.6 |
ndk |
purine metabolism |
v67 |
|
Complex I (NADH desidrogenase) |
Q8 + NADH_x + 5H -> Q8H2 + NAD + 4H_x |
Ubiquinone + NADH + 5H => Ubiquinol + NAD + 4H |
1.6.5.3 |
GXY_08325,GXY_11983,GXY_11988,GXY_11993,GXY_12583,GXY_15579 |
oxidative phosphorilation |
v68 |
|
Complex II (succinate desidrogenase) |
Q8 + SUCC -> Q8H2 + FUM |
Ubiquinone + Succinate -> Ubiquinol + Fumarate |
1.3.5.1 |
|
oxidative phosphorilation |
v69 |
|
Ubiquinol Oxidase (citocromo bd oxidase) |
2Q8H2 + 4H + O2 -> 2Q8 + 2H2O + 4H_x |
2Ubiquinol + 4H + Oxygen => 2Ubiquinone + 2H2O + 4H_out |
1.10.3.10 |
GXY_05121,GXY_05126,GXY_05131,GXY_05136 |
oxidative phosphorilation |
v70 |
|
Complex IV (citocromo c oxidase) |
O2 + 4FERROCYTOCHROME + 4H -> 4FERRICYTOCHROME + 2H2O + 4H_x |
Oxygen + 4 reduced-cytochrome-c => 4oxidized-cytochrome-c + 2H2O + 4H_out |
1.9.3.1 |
GXY_04894,GXY_07135 |
oxidative phosphorilation |
v71 |
|
Complex III (citocromo bc1) |
Q8H2 + 2FERRICYTOCHROME + 2H -> Q8 + 2FERROCYTOCHROME + 4H_x |
Ubiquinol + 2 oxidized-cytochrome-c -> Ubiquinone + 2 reduced-cytochrome-c |
1.10.2.2 |
GXY_00569,GXY_00574,GXY_16474 |
oxidative phosphorilation |
v72 |
|
|
NADH_x + 0.5O2 + 2.5ADP + 2.5PI + 3.5H -> 3.5H2O + NAD + 2.5ATP |
NADH_x + 0.5O2 + 2.5ADP + 2.5PI + 3.5H -> 3.5H2O + NAD + 2.5ATP |
|
|
oxidative phosphorilation |
v73 |
|
|
FADH2 + 0.5O2 + 1.5ADP + 1.5PI + 2.5H -> 2.5H2O + FAD + 1.5ATP |
FADH2 + 0.5O2 + 1.5ADP + 1.5PI + 2.5H -> 2.5H2O + FAD + 1.5ATP |
|
|
|
v74 |
|
biomass reaction |
41.257ATP + 0.205G6P + 0.0709F6P + 0.8977R5P + 0.8977E4P + 0.129G3P + 1.496*3-PG + 0.5191PEP + 28.328PYR + 3.747ACCOA_x + 1.078AKG + 1.786OAA + 1.822NADPH + 3.547NAD + 41.257H2O -> 41.257ADP + 41.257PI + 3.747CoA+ 1.822NADP + 46.626H + BIOMASS |
|
|
|
biomass |
|
|
|
|
|
|
|
|
|
|
BIOMASS COMPOSITION |
|
|
|
Metabolites
|
Coefficient
|
|
|
|
|
NADPH |
-1.822 |
|
|
|
|
D-Erythrose4-phosphate |
-0.8977 |
|
|
|
|
NADH |
3.547 |
|
|
|
|
Phosphoenolpyruvate |
-0.5191 |
|
|
|
|
NADP |
1.822 |
|
|
|
|
NAD |
-3.547 |
|
|
|
|
H2O |
-41.257 |
|
|
|
|
Acetyl-CoA |
-3.747 |
|
|
|
|
ADP |
41.257 |
|
|
|
|
CoA |
3.747 |
|
|
|
|
ATP |
-41.257 |
|
|
|
|
Pyruvate |
-2.832 |
|
|
|
|
3-Phosphoglycerate |
-1.496 |
|
|
|
|
Oxaloacetate |
-1.786 |
|
|
|
|
Phosphate |
41.257 |
|
|
|
|
D-fructose-6-phosphate |
-0.0709 |
|
|
|
|
ribose-5-phosphate |
-0.8977 |
|
|
|
|
H+ |
46.626 |
|
|
|
|
Glyceraldehyde3-phosphate |
-0.129 |
|
|
|
|
2-Oxoglutarate |
-1.078 |
|
|
|
|
D-glucose-6-phosphate |
-0.205 |
|
|
|
|
Biomass |
1 |
|
|
|
|
EXCHANGE REACTIONS
|
|
|
|
EX_co2(e) |
CO2 exchange |
co2_out[e] <=> |
|
|
|
EX_glc-D(e) |
glucose exchange |
glc-D_out[e] <=> |
|
|
|
EX_glyc(e) |
glycerol exchange |
glyc_out[e] <=> |
|
|
|
EX_h(e) |
H+ exchange |
h_out[e] <=> |
|
|
|
EX_h2o(e) |
H2O exchange |
h2o_out[e] <=> |
|
|
|
EX_mann(e) |
mannitol exchange |
mann_out[e] <=> |
|
|
|
EX_nh4(e) |
NH4 exchange |
nh4_out[e] <=> |
|
|
|
EX_pi(e) |
phosphate exchange |
pi_out[e] <=> |
|
|
|
EX_o2(e) |
oxygen exchange |
o2_out[e] <=> |
|
|
|
|
|
|
|
|
|
|
|
DEMAND REACTIONS
|
|
|
|
|
DM_g6p |
Glucose -6-phosphate demand |
|
|
|
DM_f6p |
Fructose-6-phosphate demand |
|
|
|
DM_r5p |
Ribose-5-phosphate demand |
|
|
|
DM_e4p |
Erythose-4-phosphate demand |
|
|
|
DM_g3p |
Glyceraldehyde -3-phosphate demand |
|
|
|
DM_3-pg |
3-Phospho-D-glycerate demand |
|
|
|
DM_pep |
Phosphooenolpyruvate demand |
|
|
|
DM_pyr |
Pyruvate demand |
|
|
|
DM_accoa |
Acetyl-CoA demand |
|
|
|
DM_akg |
2-oxoglutaratedemand |
|
|
|
DM_oaa |
Oxaloacetate demand |
|