2532 |
Rv0002 |
Rv0002_481t>C |
S |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
6406 |
Rv0005 |
Rv0005_1284c>T |
S |
3232 Kasai H, Ezaki T, Harayama S. Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences. J Clin Microbiol. 2000;38:301-8.
|
9304 |
Rv0006 |
Rv0006_2003g>A |
NS |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
37031 |
Rv0034 |
Rv0034_165c>G |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
43945 |
Rv0041 |
Rv0041_384a>G |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
92199 |
Rv0083 |
Rv0083_188t>G |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
157292 |
Rv0129c |
Rv0129c_309g>A |
S |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
220050 |
Rv0189c |
Rv0189c_1674g>A |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
311613 |
Rv0260c |
Rv0260c_1047c>A |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
720863 |
Rv0629c |
Rv0629c_870c>A |
S |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
797736 |
Rv0697 |
Rv0697_804c>T |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
918316 |
Rv0824c |
Rv0824c_435a>G |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
923065 |
Rv0831c |
Rv0831c_645a>T |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
1047683 |
Rv0938 |
Rv0938_1548g>T |
NS |
3535 Dippenaar A. A phylogenomic- and proteomic investigation into the evolution and biological characteristics of the members of the group 2 Latin-American Mediterranean (LAM) genotype of Mycobacterium tuberculosis (Internet); 2014. Available from: http://scholar.sun.ac.za/handle/10019.1/86748 [cited 30.09.16]. http://scholar.sun.ac.za/handle/10019.1/...
|
1068151 |
Rv0956 |
Rv0956_591t>C |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
1139222 |
Rv1020 |
Rv1020_256g>A |
NS |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
1163134 |
Rv1040c |
Rv1040c_243a>G |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
1178116 |
Rv1056 |
Rv1056_489t>C |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
1477588 |
Rv1316c |
Rv1316c_44c>G |
NS |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
1479085 |
Rv1317c |
Rv1317c_34a>G |
NS |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
1548149 |
Rv1375 |
Rv1375_318G<A |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
1588456 |
Rv1411c |
Rv1411c_27t>C |
S |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
1595342 |
Rv1420 |
Rv1420_1301t>C |
NS |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
1884697 |
Rv1662 |
Rv1662_2994G>a |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
1892017 |
Rv1665 |
Rv1665_792t>C |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
1920120 |
Rv1696 |
Rv1696_438g>T |
NS |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
1960391 |
Rv1733c |
Rv1733c_97c>T |
NS |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
2134215 |
Rv1884c |
Rv1884c_47a>G |
S |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
2239349 |
Rv1996 |
Rv1996_346a>G |
NS |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
2278276 |
Rv2030c |
Rv2030c_111c>T |
S |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
2603797 |
Rv2330c |
Rv2330c_426c>T |
S |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
2627946 |
Rv2349c |
Rv2349c_753T>c |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
2643653 |
Rv2362c |
Rv2362c_606c>T |
S |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
2825581 |
Rv2510c |
Rv2510c_1509a>C |
S |
3636 Niemann S, Köser CU, Gagneux S, et al. Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints. PLoS ONE. 2009;4:e7407.
|
2880702 |
Rv2560 |
Rv2560_628g>C |
NS |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
2891267 |
Rv2567 |
Rv2567_1473c>T |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
3300104 |
Rv2949c |
Rv2949c_467g>A |
NS |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
3300196 |
Rv2949c |
Rv2949c_375c>T |
S |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
3312632 |
Rv2959c |
Rv2959c_207g>A |
NS |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
3332254 |
Rv2976c |
Rv2976c_501g>A |
S |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
3335708 |
Rv2979c |
Rv2979c_41c>G |
NS |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
3426795 |
Rv3062 |
Rv3062_1212c>G |
S |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
3438386 |
Rv3075c |
Rv3075c_588c>T |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
3440542 |
Rv3077 |
Rv3077_1002a>G |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
3455686 |
Rv3088 |
Rv3088_1347g>C |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
3544710 |
Rv3176c |
Rv3176c_591a>G |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
3597737 |
Rv3221c |
Rv3221c_30g>A |
S |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
3641447 |
Rv3261 |
Rv3261_905c>T |
NS |
3333 Hershberg R, Lipatov M, Small PM, et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008;6:e311.
|
3681548 |
Rv3297 |
Rv3297_229a>C |
S |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
3783058 |
Rv3370c |
Rv3370c_1683c>T |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
4024273 |
Rv3581c |
Rv3581c_75a>G |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
4081987 |
Rv3644c |
Rv3644c_735c>G |
S |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
4081996 |
Rv3644c |
Rv3644c_726c>G |
S |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
4119246 |
Rv3679 |
Rv3679_471T>c |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
4137829 |
Rv3695 |
Rv3695_624c>T |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|
4156239 |
Rv3711c |
Rv3711c_491t>C |
NS |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
4156503 |
Rv3711c |
Rv3711c_227g>A |
NS |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
4182695 |
Rv3731 |
Rv3731_938g>A |
NS |
1313 Dos Vultos T, Mestre O, Rauzier J, et al. Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis. PLoS ONE. 2008;3:e1538.
|
4255922 |
Rv3799c |
Rv3799c_27t>C |
S |
3434 Filliol I, Motiwala AS, Cavatore M, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol. 2006;188:759-72.
|