Fungi |
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A, B, C |
Aspergillus fumigatus Af293 |
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(Nierman et al., 2005Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C et al. (2005) Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature 438:1151–6.) |
A, B, C |
Aspergillus nidulans FGSC A4 |
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(Galagan et al., 2005Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Bastürkmen M, Spevak CC, Clutterbuck J et al. (2005) Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature 438:1105–15.; Wortman et al., 2009Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR, Archer D, Bencina M, Braus G, Coutinho P et al. (2009) The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Fungal Genet Biol 46 Suppl 1:S2–13.) |
A, B, C |
Aspergillus niger CBS 513.88 |
|
(Pel et al., 2007Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K et al. (2007) Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol 25:221–31.) |
A, B, C |
Beauveria bassiana ARSEF 2860 |
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(Xiao et al., 2012Xiao G, Ying SH, Zheng P, Wang ZL, Zhang S, Xie XQ, Shang Y, St. Leger RJ, Zhao GP, Wang C et al. (2012) Genomic perspectives on the evolution of fungal entomopathogenicity in Beauveria bassiana. Sci Rep 2:483.) |
A, B, C |
Cordyceps militaris CM01 |
|
(Zheng et al., 2011Zheng P, Xia Y, Xiao G, Xiong C, Hu X, Zhang S, Zheng H, Huang Y, Zhou Y, Wang S et al. (2011) Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine. Genome Biol 12:R116.) |
A, B, C |
Fusarium graminearum PH-1 |
|
(Cuomo et al., 2007Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M et al. (2007) The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 317:1400–2.) |
A, B, C |
Fusarium oxysporum f. sp. cubense
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|
(Guo et al., 2014Guo L, Han L, Yang L, Zeng H, Fan D, Zhu Y, Feng Y, Wang G, Peng C, Jiang X et al. (2014) Genome and transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. cubense causing banana vascular wilt disease. PLoS One 9:e95543.) |
A, B, C |
Magnaporthe oryzae 70-15 |
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(Dean et al., 2005Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H et al. (2005) The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434:980–6.) |
A, B, C |
Metarhizium acridum CQMa 102 |
|
(Gao et al., 2011Gao Q, Jin K, Ying SH, Zhang Y, Xiao G, Shang Y, Duan Z, Hu X, Xie XQ, Zhou G et al. (2011) Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum. PLoS Genet 7:e1001264.) |
A, B, C |
Metarhizium robertsii ARSEF 23 |
|
(Gao et al., 2011Gao Q, Jin K, Ying SH, Zhang Y, Xiao G, Shang Y, Duan Z, Hu X, Xie XQ, Zhou G et al. (2011) Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum. PLoS Genet 7:e1001264.; Hu et al., 2014Hu X, Xiao G, Zheng P, Shang Y, Su Y, Zhang X, Liu X, Zhan S, St Leger RJ and Wang C (2014) Trajectory and genomic determinants of fungal-pathogen speciation and host adaptation. Proc Natl Acad Sci U S A 111:16796–801.) |
A, B, C |
Nectria haematococca MPVI 77-13-4 |
|
(Coleman et al., 2009Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S et al. (2009) The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. PLoS Genet 5:e1000618.) |
A, B |
Neurospora crassa OR74A |
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(Galagan et al., 2003Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S et al. (2003) The genome sequence of the filamentous fungus Neurospora crassa. Nature 422:859–68.) |
A, B, C |
Trichoderma atroviride IMI 206040 |
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(Kubicek et al., 2011Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK et al. (2011) Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol 12:R40.) |
A, B, C |
Trichoderma reesei QM6a |
|
(Martinez et al., 2008Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D et al. (2008) Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat Biotechnol 26:553–60.) |
A, B, C |
Trichoderma virens Gv29-8 |
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(Kubicek et al., 2011Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK et al. (2011) Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol 12:R40.) |
B |
Rhizomucor miehei
|
RmNag |
(Yang et al., 2014Guo L, Han L, Yang L, Zeng H, Fan D, Zhu Y, Feng Y, Wang G, Peng C, Jiang X et al. (2014) Genome and transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. cubense causing banana vascular wilt disease. PLoS One 9:e95543.) |
C |
Amesia atrobrunnea
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CEL3a, CEL3b |
(Colabardini et al., 2016Colabardini AC, Valkonen M, Huuskonen A, Siika-aho M, Koivula A, Goldman GH and Saloheimo M (2016) Expression of two novel β -glucosidases from Chaetomium atrobrunneum in Trichoderma reesei and characterization of the heterologous protein products. Mol Biotechnol 58:821–831.) |
C |
Aspergillus aculeatus
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BGL1 |
(Kawaguchi et al., 1996Kawaguchi T, Enoki T, Tsurumakia S, Ooib T and Arai M (1996) Cloning and sequencing of the cDNA encoding β-glucosidase 1 from Aspergillus aculeatus. Gene 173:287–288.) |
C |
Aspergillus oryzae RIB40 |
BglA, BglF, BglJ |
(Kudo et al., 2015Kudo K, Watanabe A, Ujiie S, Shintani T and Gomi K (2015) Purification and enzymatic characterization of secretory glycoside hydrolase family 3 (GH3) aryl β-glucosidases screened from Aspergillus oryzae genome. J Biosci Bioeng 120:614–623.) |
C |
Neurospora crassa OR74A |
BGL2 |
(Pei et al., 2016Pei X, Zhao J, Cai P, Sun W, Ren J, Wu Q, Zhang S and Tian C (2016) Heterologous expression of a GH3 β-glucosidase from Neurospora crassa in Pichia pastoris with high purity and its application in the hydrolysis of soybean isoflavone glycosides. Protein Expr Purif 119:75–84.) |
C |
Penicillium brasilianum
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BGL1 |
(Krogh et al., 2010Krogh KBRM, Harris PV, Olsen CL, Johansen KS, Hojer-pedersen J, Borjesson J and Olsson L (2010) Characterization and kinetic analysis of a thermostable GH3 β -glucosidase from Penicillium brasilianum. Appl Microbiol Biotechnol 86:143–154.) |
C |
Thermothelomyces thermophila ATCC 42464 |
MtBgl3b |
(Zhao et al., 2015Zhao J, Guo C, Tian C and Ma Y (2015) Heterologous expression and characterization of a GH3 β -glucosidase from thermophilic fungi Myceliophthora thermophila in Pichia pastoris. Appl Biochem Biotechnol 177:511–527.) |
C |
Ustilago esculenta
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UeBgl3A |
(Nakajima et al., 2012Nakajima M, Yamashita T, Takahashi M, Nakano Y and Takeda T (2012) Identification, cloning, and characterization of β -glucosidase from Ustilago esculenta. Appl Microbiol Biotechnol 93:1989–1998.) |
Bacteria |
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B |
Alteromonas sp. 0-7 |
HEXA |
(Tsujibo et al., 1994Tsujibo H, Fujimoto K, Tanno H, Miyamoto K, Imada C, Okami Y and Inamori Y (1994) Gene sequence, purification and characterization of N-acetyl-beta-glucosaminidase from a marine bacterium, Alteromonas sp. strain O-7. Gene 146:111–5.) |
B |
Bacillus subtilis 168 |
NAGZ |
(Liu et al., 1997Liu H, Haga K, Yasumoto K, Ohashi Y, Yoshikawa H and Takahashi H (1997) Sequence and analysis of a 31 kb segment of the Bacillus subtilis chromosome in the area of the rrnH and rrnG operons. Microbiology 143:2763–7.) |
B |
Cellulomonas fimi
|
NAG3 |
(Mayer et al., 2006Mayer C, Vocadlo DJ, Mah M, Rupitz K, Stoll D, Warren R AJ and Withers SG (2006) Characterization of a beta-N-acetylhexosaminidase and a beta-N-acetylglucosaminidase/beta-glucosidase from Cellulomonas fimi. FEBS J 273:2929–2941.) |
B |
Clostridium paraputrificum M-21 |
NAGZ |
(Li et al., 2003Li H, Morimoto K, Katagiri N, Kimura T, Sakka K, Lun S and Ohmiya K (2003) A novel β-N-acetylglucosaminidase of Clostridium paraputrificum M-21 with high activity on chitobiose. Appl Microbiol Biotechnol 60:420–427.) |
B |
Escherichia coli K-12 |
NAGZ |
(Cheng et al., 2000Cheng Q, Li H, Merdek K and Park JT (2000) Molecular characterization of the beta-N-acetylglucosaminidase of Escherichia coli and its role in cell wall recycling. J Bacteriol 182:4836–40.) |
B |
Streptomyces thermoviolaceus OPC-520 |
NAGA |
(Tsujibo et al., 1998Tsujibo H, Hatano N and Mikami T (1998) A novel β-N-Acetylglucosaminidase from Streptomyces thermoviolaceus OPC-520: gene cloning, expression, and assignment to family 3 of the glycosyl hydrolases. Appl Environ Microbiol 64:2920–2924.) |
B |
Thermotoga maritima NSB-8 |
NAGA |
(Choi et al., 2009Choi KH, Seo JY, Park KM, Park CS and Cha J (2009) Characterization of glycosyl hydrolase family 3 β-N-acetylglucosaminidases from Thermotoga maritima and Thermotoga neapolitana. J Biosci Bioeng 108:455–459.) |
B |
Thermotoga neapolitana KCCM-41025 |
CBSA |
(Choi et al., 2009Choi KH, Seo JY, Park KM, Park CS and Cha J (2009) Characterization of glycosyl hydrolase family 3 β-N-acetylglucosaminidases from Thermotoga maritima and Thermotoga neapolitana. J Biosci Bioeng 108:455–459.) |
B |
Vibrio cholerae
|
NAGZ |
(Stubbs et al., 2007Stubbs KA, Balcewich M, Mark BL and Vocadlo DJ (2007) Small molecule inhibitors of a glycoside hydrolase attenuate inducible AmpC-mediated beta-lactam resistance. J Biol Chem 282:21382–91.; Balcewich et al., 2009Balcewich MD, Stubbs KA, He Y, James TW, Davies GJ, Vocadlo DJ and Mark BL (2009) Insight into a strategy for attenuating AmpC-mediated beta-lactam resistance: structural basis for selective inhibition of the glycoside hydrolase NagZ. Protein Sci 18:1541–51.) |
B |
Vibrio furnissii 7225 |
NAGZ |
(Chitlaru and Roseman, 1996Chitlaru E and Roseman S (1996) Molecular cloning and characterization of a novel beta-N-acetyl-D-glucosaminidase from Vibrio furnissii. J Biol Chem 271:33433–9.) |