Measuring small-scale physical processes and how they affect the spatial patterns of sea water's optical constituents plays a key role in understanding the functioning of complex coastal ecosystems such as estuaries. The spatial variations of physical and bio-optical water properties were investigated during one spring tidal cycle in austral summer, on two transects across the channel of the Medeiros and Itaqui sub-estuaries. These sub-estuaries are a biosphere reserve, and part of the Paranaguá Estuarine System, located on the Southern Brazilian coast. Both sub-estuaries were classified as Type 1a, wellmixed with low stratification. The salinity variations are in phase with the water level, and the tidal propagation is well represented by a standing wave. The vertical velocity profiles showed little vertical shear, and the intensity of the u-component of the velocity varied semi-diurnally. The upper estuary salt transport was dominated by tidal diffusion in an unstable water column. The optical environment presented a mixed dominance of optically active substances, as indicated by the absorption coefficients of dissolved and particulate matter. The colored dissolved organic matter (CDOM) showed overall conservative behavior and was dominant in light absorption below 550 nm in the Medeiros, while nonalgal particles play the most important role in light absorption in the Itaqui in the blue absorption band. The phytoplanktonic contribution is prominent in the red domain and increases as a function of saline intrusion. However, due to the influence of freshwater discharge and the re-suspension of bottom sediments induced by physical processes, the concentrations of the optical components in the water column do not generally have any simple relationships between them.
Estuarine circulation; Salt transport; Water quality; Optical classification; Absorption coefficients; Laranjeiras Bay
