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Carbon dioxide/methanol conversion cycle based on cascade enzymatic reactions supported on superparamagnetic nanoparticles

ABSTRACT

The conversion of carbon dioxide into important industrial feedstock is a subject of growing interest in modern society. A possible way to achieve this goal is by carrying out the CO2/methanol cascade reaction, allowing the recycle of CO2 using either chemical catalysts or enzymes. Efficient and selective reactions can be performed by enzymes; however, due to their low stability, immobilization protocols are required to improve their performance. The cascade reaction to reduce carbon dioxide into methanol has been explored by the authors, using, sequentially, alcohol dehydrogenase (ADH), formaldehyde dehydrogenase (FalDH), and formate dehydrogenase (FDH), powered by NAD+/NADH and glutamate dehydrogenase (GDH) as the co-enzyme regenerating system. All the enzymes have been immobilized on functionalized magnetite nanoparticles, and their reactions investigated separately in order to establish the best performance conditions. Although the stepwise scheme led to only 2.3% yield of methanol per NADH; in a batch system under CO2 pressure, the combination of the four immobilized enzymes increased the methanol yield by 64 fold. The studies indicated a successful regeneration of NADH in situ, envisaging a real possibility of using immobilized enzymes to perform the cascade CO2-methanol reaction.

Key words:
carbon dioxide; enzyme cascade-reaction; methanol production; superparamagnetic nanoparticles; enzymatic catalysis

INTRODUCTION

CARBON DIOXIDE-METHANOL CYCLE

Biological evolution required the use of carbon dioxide as a carbon source to construct important natural building blocks, compelling the employment of natural catalysts,- the enzymes (Emsley 2011EMSLEY J. 2011. Nature’s Building Blocks: An A-Z Guide to the Elements. Oxford University Press, New York. , Smith and Morowitz 2016SMITH E AND MOROWITZ HJ. 2016. The Origin and Nature of Life on Earth: The Emergence of the Fourth Geosphere. Cambridge University Press, Cambridge.). They are specific, efficient and essential for life on earth (Ermler 1998ERMLER U, GRABARSE W, SHIMA S, GOUBEAUD M AND THAUER RK. 1998. Active sites of transition-metal enzymes with a focus on nickel. Current Opinion in Structural Biology 8: 749-758., Lehninger 2006LEHNINGER AL. 2006. Principles of biochemistry, WH Freeman and Company, New York. ), and participate in most of the biological pathways, including the Calvin cycle, reductive citric acid cycle, reductive acetyl-CoA route and dicarboxylate/4-hydroxybutyrate cycle. All such cycles depend on specific enzymatic systems (Buchanan and Arnon 1990BUCHANAN BB AND ARNON DI. 1990. A reverse KREBS cycle in photosynthesis: consensus at last. Photosynth Res 24: 47-53., Fridlyand and Scheibe 1999FRIDLYAND LE AND SCHEIBE R. 1999. Regulation of the Calvin cycle for CO2 fixation as an example for general control mechanisms in metabolic cycles. Biosystems 51: 79-93., Ragsdale 1991RAGSDALE SW. 1991. Enzymology of the acetyl-CoA pathway of CO2 fixation. Crit Rev Biochem Mol. Biol. 26: 261-300., Ducat and Silver 2012DUCAT DC AND SILVER PA. 2012. Improving Carbon Fixation Pathways. Current Opinion in Chem Biol 16: 337-344., Shi et al. 2015SHI JF, JIANG YJ, JIANG ZY, WANG XY, WANG XL, ZHANG SH, HAN PP AND YANG C. 2015. Enzymatic conversion of carbon dioxide. Chem Soc Rev 44: 5981-6000.).

Nowadays, carbon dioxide is perhaps the target molecule of mankind, and different technologies to perform the CO2-methanol cycle have been developed, including chemical (Ganesh 2014GANESH I. 2014. Conversion of carbon dioxide into methanol - a potential liquid fuel: Fundamental challenges and opportunities. Renew Sustainable Energy Rev 31: 221-257.) and enzymatic routes (Sultana et al. 2016SULTANA S, SAHOO PC, MARTHA S AND PARIDA K. 2016. A review of harvesting clean fuels from enzymatic CO2 reduction. RSC Adv 6: 44170-44194.). The growing interest on CO2 transformation into important starting feedstock in the chemical industries has arisen due to the negative environmental prospects of fossil fuels use (Liu et al. 2015LIU Q, WU L, JACKSTELL R AND BELLER M. 2015. Using carbon dioxide as a building block in organic synthesis. Nat Commun 6: 5933-5934 ). For instance, carbon dioxide has been announced as one of the most important greenhouse gases responsible for global warming, and the use of fossil fuels resources (oil, natural gas, coal) has a negative impact on the environment due to high concentrations of carbon-containing products managed by the modern society. These prospects escalated the search of catalysts capable of converting renewable sources into industrial feedstock (Huff and Sanford 2011HUFF CA AND SANFORD MS. 2011. Cascade Catalysis for the Homogeneous Hydrogenation of CO2 to Methanol. J Am Chem Soc 133: 18122-18125.). In this sense, nature´s catalysts are the best candidates for developing artificial biological routes toward carbon dioxide reduction (Shi et al. 2015SHI JF, JIANG YJ, JIANG ZY, WANG XY, WANG XL, ZHANG SH, HAN PP AND YANG C. 2015. Enzymatic conversion of carbon dioxide. Chem Soc Rev 44: 5981-6000.).

The CO2-methanol catalytic cycle is perhaps the most important artificial biological route deserving investments, considering that CO2 recycling into methanol represents a renewable and environmental friendly alternative to the fossil fuels, providing a feedstock to the chemical industry. Encompassing the perspectives of artificial photosynthesis, this cycle can be performed by a cascade reaction involving the enzymes formate dehydrogenase (FDH), formaldehyde dehydrogenase (FalDH) and alcohol dehydrogenase (ADH). A fourth enzyme capable of reducing NAD+ to NADH, is also required for regenerating the system, providing a positive feedback (Luo et al. 2015LUO J, MEYER AS, MATEIU RV AND PINELO M. 2015. Cascade catalysis in membranes with enzyme immobilization for multi-enzymatic conversion of CO2 to methanol. New Biotechnol 32: 319-327., Cazelles et al. 2013CAZELLES R, DRONE RJ, FAJULA F, ERSEN O, MOLDOVAN S AND GALARNEAU A. 2013. Reduction of CO2 to methanol by a polyenzymatic system encapsulated in phospholipids-silica nanocapsules. New J Chem 37: 3721-3730., Sultana et al. 2016SULTANA S, SAHOO PC, MARTHA S AND PARIDA K. 2016. A review of harvesting clean fuels from enzymatic CO2 reduction. RSC Adv 6: 44170-44194.).

Despite the existing efforts in this area, the conversion of CO2 into methanol is still a big challenge, since it involves the transfer of 6-electrons and 6-protons in the whole process, whereas most typical catalytic systems produce only formic acid or CO in a 2-electron, 2-proton process, while very often stopping the reduction at this point (Shen et al. 2015SHEN J, KORTLEVER R, KAS R, BIRDJA YY, DIAZ-MORALES O, KWON Y, LEDEZMA-YANEZ I, SCHOUTEN KHP, MUL G AND KOPER TM. 2015. Electrocatalytic reduction of carbon dioxide to carbon monoxide and methane at an immobilized cobalt protoporphyrin. Nat Commun 6: 8177., Sasayama et al. 2016SASAYAMA AF, MOORE CE AND KUBIAK CP. 2016. Electronic effects on the catalytic disproportionation of formic acid to methanol by [CpIr(III)(R-bpy)Cl]Cl complexes. Dalton Transactions 45: 2436-2439.). In multi-enzymatic systems, even when formate is reduced to formaldehyde, a further reduction to methanol in water is hindered by the equilibrium between formaldehyde and methane diol. This can limit the formaldehyde reduction to methanol, turning dehydration the rate-limiting step in the overall reaction (Ma et al. 2016MA K, YEHEZKELI O, PARK E AND CHA JN. 2016. Enzyme Mediated Increase in Methanol Production from Photoelectrochemical Cells and CO2. ACS Catal 6: 6982-6986.). On the other hand, formaldehyde is an enzyme inhibitor, and its accumulation in the system is not desirable (Teng et al. 2001TENG S, BEARD K, POURAHMAD J, MORIDANI M, EASSON E, POON R AND O’BRIEN PJ. 2001. The formaldehyde metabolic detoxification enzyme systems and molecular cytotoxic mechanism in isolated rat hepatocytes. Chemico-Biological Interactions 130-132: 285-296.). Moreover, the CO2-methanol cycle can also be limited by the methanol concentration in solution, since it has been shown that at a molar ratio of methanol to total volume of reaction higher than 1.5, the activity of some enzymes may be inhibited (Jeon and Yeom 2011JEON DJ AND YEOM SH. 2011. Comparison of methods for preventing methanol inhibition in enzymatic production of biodiesel. Korean J Chem Eng 28: 1420-1426.).

ENZYME IMMOBILIZATION

Because of their specific molecular structures, enzymes are very dependent on the interaction with the substrate and cofactors, and their active or binding sites are very sensitive to the size, shape, charge and local hydrophobic/hydrophilic features (Yon et al. 1998YON J, PERAHIA D AND GHELIS C. 1998. Conformational dynamics and enzyme activity. Biochimie 80: 33-42). Their catalytic activity is related to the stabilization of the transition state involved in the reaction, and depends upon the specific interaction with the substrate, as proposed by Emil Fisher in 1894FISHER E. 1894. Einfluss der Configuration auf die Wirkung der Enzyme. Berichte der Deutschen Chemischen Gesellschaft 27: 2985-2888. (Fisher 1894) in terms of a rigid key-lock scheme. Another point of view has been described (Koshland 1958KOSHLAND DE. 1958. Application of a Theory of Enzyme Specificity to Protein Synthesis. Proc Natl Acad Sci USA 44: 98-101.), considering a more flexible association, allowing discrete and reversible conformational changes of the enzyme (Koshland 1968, Thoma and Koshland 1960THOMA JA AND KOSHLAND DE. 1960. Competitive Inhibition by Substrate during Enzyme Action. Evidence for the Induced-fit Theory. J Am Chem Soc 82: 3329-3333., Eisenmesser et al. 2002EISENMESSER EZ, BOSCO DA, AKKE M AND KERN D. 2002. Enzyme dynamics during catalysis. Science 295: 1520-1523.). In the absence of substrate, some enzymes can have an open form, but in its presence, a closed conformation is induced in order to prevent the substrate escape, thus enhancing the catalysis (Buchachenko and Kuznetsov 2008BUCHACHENKO AL AND KUZNETSOV DA. 2008. Magnetic Field Affects Enzymatic ATP Synthesis. J Am Chem Soc 130: 12868-12869.). Conditional factors, such as pH, temperature and ionic strength, can promote enzyme conformational changes, improving or depleting the catalysis (Eichwald and Walleczek 1998EICHWALD C AND WALLECZEK J. 1998. Magnetic field perturbations as a tool for controlling enzyme-regulated and oscillatory biochemical reactions. Biophys Chem 74: 209-224., Joshi et al. 2000JOSHI MD, SIDHU G, BRAYER GD, WITHERS SG AND MCINTOSH LP. 2000. Hydrogen bonding and catalysis: a novel explanation for how a single amino acid substitution can change the pH optimum of a glycosidase. J Mol Biol 299: 255-279.).

In most industrial applications, the fragile nature of enzymes requires the enzyme immobilization, or its physical confinement, but without blocking their catalytic activities. Enzyme immobilization may be accompanied by structural changes influencing its activity (Kim et al. 2006KIM J, GRATE JW AND WANG P. 2006. Nanostructures for enzyme stabilization. Chem Eng Sci. 61: 1017-1026. , Sharma et al. 2007SHARMA A, QIANG Y, MEYER AD, KORNACKI P AND PASZCYNSKI A. 2007. Dramatic Increase in Stability and Longevity of Enzymes Attached to Monodispersive Iron Nanoparticles. IEEE Trans Magn 43: 2418-2420., Ge et al. 2009GE J, LU D, LIU Z AND LIU ZX AND LIU Z. 2009. Recent advances in nanostructured biocatalysts. Biochem Eng J 44: 53-59.). For this reason, immobilization requires a careful methodology optimization for keeping or eventually improving the enzyme activity, and also for increasing the stability and allowing recycling. It should be noticed that enzyme immobilization can also afford protection against autolysis, proteolysis and aggregation effects. Among other advantages, immobilization greatly simplifies the reactor design, and provides an effective way to stop the reaction, e. g. by removing the enzyme (Mateo et al. 2007MATEO C, PALOMO JM, FERNANDEZ-LORENTE G, GUISAN JM AND FERNANDEZ-LAFUENTE R. 2007. Improvement of enzyme activity, stability and selectivity via immobilization techniques. Enzyme Microb Technol 40: 1451-1463.).

Two main immobilization methodologies can be highlighted: the reversible and the irreversible one. Irreversible immobilization can prevent the enzyme leaching from the support, however it should be mentioned that when the activity is lost, the support should be discarded with the enzyme, whereas in the case of a reversible immobilization the regeneration of the support can be feasible. Covalent bonding between the enzyme and support is usually employed in the irreversible methodology. For instance, coupling reactions can be performed using reactive groups such as amines, carboxylates and thiols. Carboxylic groups can be activated with 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide, or EDC (Kondo and Fukuda 1997KONDO A AND FUKUDA H. 1997. Preparation of thermo-sensitive magnetic hydrogel microspheres and application to enzyme immobilization. J Ferment Bioeng 84: 337-341.) in order to bind amines, yielding stable amide bonds linking the enzyme to the support (Bílková et al. 2002BÍLKOVÁ Z, SLOVÁKOVÁ M, HORÁK D, LENFELDC J AND CHURÁCEK J. 2002. Oriented immobilization of galactose oxidase to bead and magnetic bead cellulose and poly(HEMA-co-EDMA) and magnetic poly(HEMA-co-EDMA) microspheres. J Chromatogr B 770: 177-181., Hong et al. 2007HONG J, XU D, GONG P, MA H, DONG L AND YAO S. 2007. Conjugation of enzyme on superparamagnetic nanogels covered with carboxyl groups. J Chromatogr B 850: 499-506., Demirel et al. 2004DEMIREL D, ÖZDURAL AR AND MUTLU M. 2004. Performance of immobilized Pectinex Ultra SP-L on magnetic duolite-polystyrene composite particles Part I: a batch reactor study. J Food Eng 64: 417-421., Demirel and Mutlu 2005, Zeng et al. 2006ZENG L, LUO K AND GONG Y. 2006. Preparation and characterization of dendritic composite magnetic particles as a novel enzyme immobilization carrier. J Mol Cat B Enzym 38: 24-28., Guo et al. 2003GUO Z, BAI S AND SUN Y. 2003. Preparation and characterization of immobilized lipase on magnetic hydrophobic microspheres. Enzyme MicrobTechnol 32: 776-782., Iman et al. 1992IMAN M, ÇELEBI SS AND ÖZDURAL AR. 1992. Preparation of photooxidized magnetic polystyrene beads for enzyme immobilization. Reactiv Polym 17: 325-340., Pan et al. 2009PAN C, HU B, LI W, SUN Y, YE H AND ZENG X. 2009. Novel and efficient method for immobilization and stabilization of β-d-galactosidase by covalent attachment onto magnetic Fe3O4-chitosan nanoparticles. J Mol Cat B Enzym 61: 208-213.). Amine groups can be linked by means of glutaraldehyde, forming imine bonds, which can further be reduced with NaBH4.

Reversible immobilization generally involves the direct adsorption of the enzyme to the support surface, by means of hydrogen bonding, van der Waals forces, electrostatic and hydrophobic interactions. Adsorption decreases the free energy by means of the entropic effect, but it is influenced by pH, ionic strength, temperature and solvent polarity (Öztürk et al. 2007ÖZTÜRK N, AKGÖL S, ANSOY M AND DENIZLI A. 2007. Reversible adsorption of lipase on novel hydrophobic nanospheres. Sep Purif Technol 58: 83-88., Valdés-Solís et al. 2009). Metal chelation can also be employed for a reversible immobilization, by connecting specific groups on the support and enzymes based on their coordination to suitable metal ions such as Cu(II) or Ni(II) (Bayramoglu et al. 2010BAYRAMOGLU G, YILMAZ GM AND ARICA MY. 2010. Reversible immobilization of laccase to poly(4-vinylpyridine) grafted and Cu(II) chelated magnetic beads: Biodegradation of reactive dyes. Biores Technol 101: 6615-6621., Wang et al. 2007WANG F, GUO C, LIU HZ, AND LIU CZ. 2007. Reversible immobilization of glucoamylase by metal affinity adsorption on magnetic chelator particles. J Mol Cat B Enzym 48: 1-5., Akgöl and Denizli 2004AKGÖL S AND DENIZLI A. 2004. Novel metal-chelate affinity sorbents for reversible use in catalase adsorption. J Mol Cat B Enzym 28: 7-14.).

The optimization of the immobilization procedures also depends on the nature of the support. Among the several existing supports, a very special one is provided by superparamagnetic nanoparticles (Andrade et al. 2010ANDRADE LH, REBELO LP, NETTO CGCM and TOMA HE. 2010. Kinetic resolution of a drug precursor by Burkholderia cepacia lipase immobilized by different methodologies on superparamagnetic nanoparticles. J Mol Cat B Enzym 66: 55-62. , Andrade et al. 2016, Netto et al. 2013NETTO CGCM, TOMA HE AND ANDRADE LH. 2013. Superparamagnetic nanoparticles as versatile carriers and supporting materials for enzymes. J Mol Catalysis B Enzym 85-86: 71-92., Toma 2013TOMA HE. 2013. Developing nanotechnological strategies for green industrial processes. Pure Appl Chem 85: 1655-1669., 2015). They exhibit very large magnetic moments, behaving as giant paramagnetic atoms. Their response to an applied magnetic field is very fast, without keeping any memory (hysteresis) due to their isotropic, nanometric structures. The particles also exhibit a large surface area and a high mass transference associated with their great mobility in solution. In addition, superparamagnetic nanoparticles can be easily recovered by using an external magnet, providing a simple and rather convenient enzyme recycling and processing strategy.

The most commonly employed magnetic support is magnetite, but maghemite, and some other ferrites can also be used in the immobilization of proteins. Magnetite has a particularly high saturation magnetization (92 emu g-1), but it should be noticed that when the particles are smaller than 8 nm, it can be difficult to protect against oxidation in the normal atmosphere because of their very large area, yielding frequently a mixtures of oxides with smaller crystallinity and poor magnetization response. Although the direct use of freshly made magnetite as support is relatively common, surface modification should be pursued to control the interaction between the magnetic core and the environment, improving the stability and reactivity. One can say that for every particular enzyme there will be an ideal support, however, the best choice is actually very difficult to predict. In some cases, a large surface area may be the most important factor, however, it should be noticed that a high density of reactive groups with minimal steric hindrances will also facilitate and improve the association of the support with the enzyme.

In this review article we focused on enzymatic immobilization to perform the conversion of carbon dioxide to methanol by using a sequential reduction catalysis involving FDH, FalDH and ADH enzymes immobilized on magnetic nanoparticles, and GDH as the enzyme responsible for accomplishing the NAD+/NADH cycle. Our current methodology requires the immobilization of the enzymes on different types of support to perform the reaction. In this regard, it should be noticed that two main immobilization methodologies are possible: co-immobilization and sequential immobilization. A low product inhibition of the enzymes may be observed in co-immobilization systems due to the intermediates consumption in situ, but the overall yield of methanol will not necessarily be improved since formaldehyde reduction can be delayed by the slow reaction from the first enzyme. On the other hand, sequential immobilization allows the optimization of the system for each enzyme separately, and eventually, the reaction can proceed by increasing the CO2 pressure to overcome diffusion problems (Luo et al. 2015LUO J, MEYER AS, MATEIU RV AND PINELO M. 2015. Cascade catalysis in membranes with enzyme immobilization for multi-enzymatic conversion of CO2 to methanol. New Biotechnol 32: 319-327.).

SINGLE IMMOBILIZATION OF CO 2 -METHANOL CYCLE ENZYMES ON SUPERPARAMAGNETIC NANOPARTICLES

Along the last five years we have performed the separate immobilization of the four enzymes involved in CO2-methanol cascade reaction, e g. alcohol dehydrogenase (ADH) from Saccharomyces cerevisae (Netto et al. 2015aNETTO CGCM, ANDRADE LH, FREITAS RS AND TOMA HE. 2015a. Association of Yeast Alcohol Dehydrogenase with Superparamagnetic Nanoparticles: Improving the Enzyme Stability and Performance. J Nanosci Nanotechnol 15: 9482-9487.), formaldehyde dehydrogenase (FalDH) from Pseudomonas putida (Netto, Andrade and Toma 2015TOMA HE. 2015. Magnetic nanohydrometallurgy, a nanotechnological approach to elemental sustainability, Green Chem 17: 2017-2041.b), Formate dehydrogenase (FDH) from Candida boidinii (Netto et al. 2012) and glutamate dehydrogenase (GDH) from bovine liver (Netto et al. 2016), on magnetite nanoparticles. Such magnetic supports encompassed distinct functionalities for better accommodating and exploring the enzyme characteristics. In our case, the most effective surface modifiers were obtained with a) aminopropyl-triethoxysilane (MagNP-APTS), b) silica shell and aminopropyl-triethoxysilane (MagNP@SiO2-APTS) and c) glyoxyl-agarose (MagNP-APTS/Glyoxyl-Agarose), as illustrated in Figure 1.

Figure 1
Functionalized magnetic nanoparticles: a) MagNP-APTS, b) MagNP@SiO2-APTS and c) MagNP-APTS/glyoxyl-agarose.

In the case of amino functionalized supports, the enzyme immobilization has been performed using the amine-aldehyde cross-linking methodology in which APTS was bound to the enzyme via a glutaraldehyde reaction. Glyoxyl-agarose however, can be directly used to bind the enzyme.

After immobilization, the systems have been evaluated in terms of activity/stability for each support, in comparison with the free enzyme, by applying an external magnetic field, either to analyze the solution content or to remove the product and add new reactants in a recycle study. It has been shown that every enzyme has a specific preference for an immobilization support, presumably because of the different conformations achieved upon attachment to each support. For instance, FDH exhibited best performance when immobilized onto MagNP-APTS, achieving higher thermal stability (60 °C, pH 7.5) and good recyclability in relation to the other supports, or to the free enzyme (Netto et al. 2012NETTO CGCM, NAKAMURA M, ANDRADE LH AND TOMA HE. 2012. Improving the catalytic activity of formate dehydrogenase from Candida boidinii by using magnetic nanoparticles. J Mol Catalysis B Enzym 84: 136-143.). FalDH and ADH, on the other hand, exhibited best performance when immobilized onto MagNP@SiO2-APTS, achieving higher scores for at their optimum pHs and temperatures, in relation to the respective free enzymes (Netto et al. 2015a). For both enzymes (FalDH and ADH) the influence of the iron couple, [Fe(II)/Fe(III)], from the magnetic nanoparticles core could be a limiting factor, arising from the possible conformation changes induced by the interaction with such metal ions, or to the redox interference in the electron transfer process (Netto et al. 2011, 2015a).

However, in the case of the glutamate dehydrogenase (GDH) enzyme, which is a hexameric protein, the best performance has been observed with the MagNP-APTS/Glyoxyl-Agarose support, allowing a higher thermal stability (50°C, pH 7.5) and recyclability (Netto et al. 2016NETTO CGCM, DASILVA DG, TOMA SH, ANDRADE LH, NAKAMURA M, ARAKI K AND TOMA HE. 2016. Bovine Glutamate Dehydrogenase Immobilization on Magnetic Nanoparticles : conformational changes and catalysis. RSC Adv 6: 12977-12992.). Curiously, for this enzyme, the MagNP-APTS support seems to favor its unfolding, promoting an abnormal allosterism in presence of ADP, ATP and GTP. The influence of some iron coordination to the enzyme amino acids may also be possible in this case, by the lack of the silica coating, generating less stable enzymatic systems.

The comparison of the active sites of the enzymes showed that FalDH and ADH are metalloenzymes bearing a zinc coordination system involving at least one cysteine residue, as can be seen in Figure 3a and 3b. Cysteine is a key catalytic component for these enzymes and its oxidation can lead to metal release and enzyme inhibition, as already observed for ADH (Giles et al. 2003GILES NM, WATTS AB, GILES GI, FRY FH, LITTLECHILD JA AND JACOB C. 2003. Metal and Redox Modulation of Cysteine Protein Function. Chem Biol 10: 677-693., Bühner and Sund 1969BÜHNER M AND HUND H. 1969. Yeast Alcohol Dehydrogenase: -SH Groups, Disulfide Groups, Quaternary Structure, and Reactivation by Reductive Cleavage of Disulfide Groups. Eur J Biochem 11: 73-80.). Taken into account that the cysteine redox potential in biological systems is between -270 mV and -125 mV (Jocelyn 1967JOCELYN PC. 1967. The Standard Redox Potential of Cysteine-Cystine from the Thiol-Disulphide Exchange Reaction with Glutathione and Lipoic Acid. European J Biochem 2: 327-330.) and that the Fe(III)/Fe(II) redox potential is 771 mV, it is plausible that when the surface iron ions become accessible, they can induce the oxidization of cysteine at the active site, inhibiting the enzyme activity. In contrast to the ADH and FalDH enzymes, FDH and GDH are not metal or cysteine dependent (Figure 3c and 3d), thus explaining why MagNP-APTS is a good support for FDH.

Figure 2
CO2-methanol cycle using formate dehydrogenase (FDH) immobilized on MagNP-APTS, formaldehyde dehydrogenase (FalDH) and alcohol dehydrogenase (ADH) immobilized on MagNP@SiO2-APTS and glutamate dehydrogenase (GDH) immobilized on MagNP-APTS/Glyoxyl-Agarose. The MagNP-APTS/Glyoxyl-Agarose/GDH system was used as a NADH regenerator.

Figure 3
Representation of the active sites for the CO2-methanol cycle enzymes: (a) FalDH, (b) ADH, (c) FDH and (d) GDH. The green spheres represent Zn2+ ions.

Another relevant point to mention is the ensamble of probable states in the intrinsic disorder theory (Netto et al. 2016NETTO CGCM, DASILVA DG, TOMA SH, ANDRADE LH, NAKAMURA M, ARAKI K AND TOMA HE. 2016. Bovine Glutamate Dehydrogenase Immobilization on Magnetic Nanoparticles : conformational changes and catalysis. RSC Adv 6: 12977-12992.). This theory is guided by entropic contributions to understand the protein dynamics, such as local unfolding, in order to achieve thermodynamic stability (Luque and Freire 2000LUQUE I AND FREIRE E. 2000. Structural Stability of Binding Sites: Consequences for binding affinity and allosteric effects. Proteins: Struct Funct Genet Suppl 4: 63-71.) (Dyson and Wright 2002DYSON HJ AND WRIGHT PE. 2002. Coupling of folding and binding for unstructured proteins. Current Opinion in Structural Biology 12: 54-60.). The immobilization behavior of GDH can be rationalized using this theory (Netto et al. 2016).

Agglomeration is another important point influencing the activity of immobilized enzymes. A possible influence can be the prevention of the dissociation of multimeric enzymes and the contact between the enzyme and its possible inhibitors; however, on the other hand, it can also affect the diffusion of substrate to the active sites, imparting negatively the catalysis. Depending on their nature, substrate, inhibitors or products can be attracted or repelled by the agglomerates, perturbing the immediate vicinity of the enzyme (Roig et al. 1987ROIG MG, ESTEVEZ FB, VELASCO FG AND CACHAZA JM. 1987. Evaluation of the Main Factors Determining the Mode of Action of Immobilized Enzymes. Biochem Ed 15: 33-41.). In our particular case, the supports used in the immobilization protocols bear amine groups (mostly in protonated form), and in this way they are prone to attract CO2, formaldehyde, methanol and formate species, enhancing the affinity towards the enzyme.

MERGING THE IMMOBILIZED ENZYMES IN CATALYSIS

Before setting the four immobilized enzymes together in a batch reaction, the best immobilization protocols for each specific enzyme should be previously investigated. Accordingly, the following binary or bi-enzymatic systems have been carefully evaluated: A) MagNP-APTS/FDH:MagNP-APTS/Glyoxyl-Agarose/GDH; B) MagNP@SiO2-APTS/FalDH:MagNP-APTS/Glyoxyl-Agarose/GDH and C) MagNP@SiO2-APTS/ADH:MagNP-APTS/Glyoxyl-Agarose/GDH. This strategy is important to evaluate the influence and compatibility of the NAD+/NADH regeneration system with respect to the immobilized enzymes. In this way, it was found that the three investigated binary enzymatic systems are compatible with the MagNP-APTS/Glyoxyl-Agarose/GDH system employed for NAD+/NADH regeneration, showing maximum reaction yields up to 2 h.

For illustration purposes, only the binary MagNP-APTS/FDH:MagNP-APTS/Glyoxyl-Agarose/GDH system will be depicted here. In this system, the amount of a-ketoglutarate formed during the CO2 reduction to formic acid has been evaluated by a colorimetric ninhydrin assay. Different reaction pHs and temperatures have been investigated for this bi-enzymatic system and the best reaction conditions were pH 6.8 (0.1 M phosphate buffer) and 25 °C. Under such conditions, MagNP-APST/FDH system can accomplish its first cycle, giving NAD+, in 10 minutes, providing the substrate for MagNP-APTS/Glyoxyl-Agarose/GDH in order to regenerate NADH. It has been bound that NAD+ actually accumulates during the first 10 minutes of reaction (Figure 4), whereas NADH synthesis requires additional 20 minutes to reach completion. Similar performance has been observed for the other bi-enzymatic systems. It should to mentioned that by the lack of the silica coating, exposed iron sites in the MagNP-APTS support could potentially destabilize GDH enzyme during the immobilization protocol, however this has not been observed. In addition, the MagNP-APTS/FDH system also did not inhibit the immobilized GDH enzume, thus ruling out any influence from the possible iron leaching from the nanoparticles to the environment.

Figure 4
Bi-enzymatic system involving MagNP-APTS/FDH and MagNP-APTS/Glyoxyl-Agarose/GDH. The reaction was evaluated by the conversion of glutamate to a-ketoglutarate by a colorimetric ninhydrin assay.

Based on these studies, it was shown that the proposed NAD+/NADH recycling system is compatible with the FDH, ADH and FalDH immobilized enzymes. Their concerted performance, however, involving cascade reactions can be planned according to two different methodologies: sequential reaction (Figure 5a) and batch multienzymatic reaction (Figure 2). For the sequential reaction, a previous CO2 saturation of the buffer solution has been performed, but the overall methanol yield was 2.3% based on the NADH concentration. Such low yield could result from the CO2 loss during the reaction or from the enzyme inhibition induced by the formic acid or formaldehyde products.

Figure 5
(a) CO2-methanol sequential reaction; (b) cascade multienzymatic CO2-methanol reaction and the amount of formaldehyde, methanol and NAD+ formed with reaction progress; (c) cascade multienzymatic CO2-methanol recycle at 25 psi, 30 minutes, 25°C, pH 7.5 (0.1M Tris-HCl buffer solution).

The multienzymatic cascade batch reaction has been carried out in a pressure reactor, in order to prevent the CO2 loss. The observed yields, around 5.2 mmol of methanol, corresponds to 147% based on NADH consumption (considering 3 mol of NADH are needed to obtain 1 mol of methanol). The optimum conditions for the multienzymatic cascade reaction were 25° C, pH 7.5, 126 psi of CO2 and 30 minutes of reaction (Figure 5b). It is interesting to note that when 11 mmol of NADH was added to the batch system, 5.2 mmol of methanol was generated from CO2. Comparatively, without applying any NAD+/NADH regeneration system, it would be required 15.6 mmol of NADH. Therefore, a properly functioning NAD+/NADH regenerating system is esssential to improve the methanol yields. Another important aspect is that the multienzymatic system has been recycled four times, without considerable loss of its activity (Figure 5c).

The electrocatalytical production of methanol from CO2 reported in the literature (Addo et al. 2011ADDO PK, ARECHEDERRA RL, WAHEED A, SHOEMAKER JD, SLY WS AND MINTEER SD. 2011. Methanol Production via Bioelectrocatalytic Reduction of Carbon Dioxide: Role of Carbonic Anhydrase in Improving Electrode Performance. Electrochem Solid-State Lett 14: E9-E13.), using formate, aldehyde, and alcohol dehydrogenases coupled to a poly(neutral red) electrode, indicated that the conversion of carbon dioxide to formate is the slowest step in the enzyme cascade. As a matter of fact, in our system, if only FDH, FalDH and ADH were taken into consideration, the FDH reaction would also be the rate determining step, since as soon as formic acid was formed (evidenced by NAD+ concentration), formaldehyde and methanol were also produced (Figure 5b). However, we believe the reaction would be more efficient if GDH could reduce NAD+ faster than it was observed (Figure 5).

Unfortunately, the NAD+regenerating system based on immobilized GDH exhibits some drawbacks, such as the easy enzyme inactivation. As a matter of fact, a study employing GDH on polystyrene particles as support has achieved only 50% methanol conversion based on NADH (El-Zahab et al. 2008). In spite of this, after 11 successive cycles, the cumulative yield of methanol was 127%, approaching the yields obtained in our laboratory. However, when the authors attempted to use NAD+ immobilization, the conversion dropped drastically to 5%, indicating some diffusional limitation of the redox process in the system

Therefore, since the immobilized FDH, FalDH and ADH species exhibit outstanding stability and activity, the NAD+/NADH regeneration systems become a critical issue for improving the methanol synthesis. For this reason, several groups (Kuwabata et al. 1994KUWABATA S, TSUDA R AND YONEYAMA H. 1994. Electrochemical conversion of carbon dioxide to methanol with the assistance of formate dehydrogenase and methanol dehydrogenase as biocatalysts. J Am Chem Soc 116: 5437-5443., Schlager et al. 2016SCHLAGER S, DUMITRU LM, HABERBAUER M, FUCHSBAUER A, NEUGEBAUER H, HIEMETSBERGER D, WAGNER A, PORTENKIRCHNER E AND SARICIFTCI NS. 2016. Electrochemical Reduction of Carbon Dioxide to Methanol by Direct Injection of Electrons into Immobilized Enzymes on a Modified Electrode. ChemSusChem 9: 631-635., Singh et al. 2017SINGH RK, NAM DH, SINGH R, LEDD JK AND PARK CB. 2017. Photoelectrochemical Reduction of Carbon Dioxide to Methanol through a Highly Efficient Enzyme Cascade. Angew Chem Int Ed 56: 3827-3830., Dibenedetto et al. 2012) have been focusing their research at this front, using different strategies, such as a phosphite dehydrogenase (PTDH) system, a glycerol dehydrogenase system or a natural photosystem from spinach leaves (chloroplasts). The phosphite dehydrogenase system was the most efficient one, working at pH 7 and yielding 4.3 mmol (gcommercial enzymatic powder)−1after 3 h reaction (Cazelles et al. 2013CAZELLES R, DRONE RJ, FAJULA F, ERSEN O, MOLDOVAN S AND GALARNEAU A. 2013. Reduction of CO2 to methanol by a polyenzymatic system encapsulated in phospholipids-silica nanocapsules. New J Chem 37: 3721-3730.).

In addition, different immobilization strategies have also been described in the literature, such as enzyme encapsulation (Xu et al. 2006XU SW, LU Y, LI J, JIANG ZY AND WU H. 2006. Efficient Conversion of CO2 to Methanol Catalyzed by Three Dehydrogenases Co-encapsulated in an Alginate−Silica (ALG−SiO2) Hybrid Gel. Ind Eng Chem Res 45: 4567-4571.), but showing lower yields in comparison with our methodology. Encapsulation of dehydrogenase enzymes in silica matrix exhibited methanol yields between 16.8% and 43.8%. If the gelation time was smaller than 60 seconds the methanol yield was much lower, as a result of the uneven distribution of the enzymes in the gel; however, at higher gelation times, 92% yield of methanol could be achieved (Jiang et al. 2003JIANG Z, WU H, XU S AND HUANG S. 2003. Enzymatic Conversion of Carbon Dioxide to Methanol by Dehydrogenases Encapsulated in Sol-Gel Matrix. In Utilization of Greenhouse Gases. ACS Symposium Series 852: 212-218.).

The immobilization of the enzymes onto the magnetic nanoparticles does not suffer from the influence of gelation time, but it suffers from the influence of immobilization time, which is more correlated with the enzyme conformational changes than with the enzyme distribution on the support (Chang et al. 2008CHANG SW, SHAW JF, YANG KH, CHANG SF AND SHIEH CJ. 2008. Studies of optimum conditions for covalent immobilization of Candida rugosa lipase on poly(c-glutamic acid) by RSM. Biores Technology 99: 2800-2805., Jiang 2004JIANG Z AND WU XS. 2004. Novel conversion of carbon dioxide to methanol catalyzed by sol-gel immobilized dehydrogenases. Stud Surf Sci Catal 153: 475-480., Imai et al. 1986IMAI K, SHIOMI T, UCHIDA K AND MIYA M. 1986. Immobilization of Enzyme onto Poly(ethy1ene-Vinyl Alcohol) Membrane. Biotechnol Bioeng 28: 198-203., Grazu et al. 2005GRAZU V, ABIAN O, MATEO C, BATISTA-VIEIRA F, FERNANDEZ-LAFUENTE R AND GUISA JM. 2005. Stabilization of Enzymes by Multipoint Immobilization of Thiolated Proteins on New Epoxy-Thiol Supports. Biotechnol Bioeng 90: 597-605., Wu et al. 2004WU H, HUANG S AND JIANG Z. 2004. Effects of modification of silica gel and ADH on enzyme activity for enzymatic conversion of CO2 to methanol. Catalysis Today 98: 545-552., Wu and Lia 2008, Netto et al. 2012NETTO CGCM, NAKAMURA M, ANDRADE LH AND TOMA HE. 2012. Improving the catalytic activity of formate dehydrogenase from Candida boidinii by using magnetic nanoparticles. J Mol Catalysis B Enzym 84: 136-143.).

In general, three-dimensional structural changes and possible diffusion resistance become critical issues to be observed in enzymatic systems. For instance, it has been shown that after modifying the ADH enzyme with polyethylene glycol (PEG), the enzyme activity and stability were substantially improved. This may be due to the effect exerted by PEG on the enzyme, protecting from the surrounding environment, although it has also been proposed that the PEG-modified ADH is more flexible than unmodified ADH (Wu et al. 2004WU H, HUANG S AND JIANG Z. 2004. Effects of modification of silica gel and ADH on enzyme activity for enzymatic conversion of CO2 to methanol. Catalysis Today 98: 545-552.).

Supports such as titania (Sun et al. 2009SUN Q, JIANG Y, JIANG Z, ZHANG L, SUN X AND LI J. 2009. Green and Efficient Conversion of CO2 to Methanol by Biomimetic Coimmobilization of Three Dehydrogenases in Protamine-Templated Titania. Ind Eng Chem Res 48: 4210-4215.) and nanofibers (Ji et al. 2015JI X, SU Z, WANG P, MA G AND ZHANG S. 2015. Tethering of Nicotinamide Adenine Dinucleotide Inside Hollow Nanofibers for High-Yield Synthesis of Methanol from Carbon Dioxide Catalyzed by Coencapsulated Multienzymes. ACS Nano 9: 4600-4610.) have also been employed, achieving 60% and 103.2% yield of methanol production, respectively. In the last example, a CO2 hydration enzyme was also coupled for increasing the overall conversion.

Several other methodologies describing the enzymatic reduction of CO2 to methanol can be found in the literature; however, none of them reports yields higher than 150%. For instance, when methanol dehydrogenase (MDH) and formate dehydrogenase were used in the electrolysis of CO2 in a saturated buffer solution, the reported yield was only 45% (Kuwabata et al. 1993KUWABATA S, TSUDA R, NISHIDA K AND YONEYMAMA H. 1993. Electrochemical Conversion of Carbon Dioxide to Methanol with Use of Enzymes as Biocatalysts. Chemistry Lett 22: 1631-1634.). Some limitation in the CO2-methanol cycle has also been imputed to the formaldehyde accumulation at poisonous concentrations, influencing the other enzymatic systems.

Therefore, more efforts should be directed to the optimization of the artificial CO2-methanol conversion cycles, in order to enable their commercial use in the future. As a long-term goal, the immobilization strategy can also be extended to the production of molecules containing more carbon atoms, employing new appropriate enzymes, inspired on Nature’s ability to generate more elaborate molecules rather than methanol.

CONCLUSIONS

Magnetic nanoparticles with different functionalization can be selectively employed for enzyme immobilization and applied to perform the CO2/methanol conversion cycle. In particular FalDH and ADH enzymes, which are metal and cysteine dependent, seem to be sensitive to the iron exposure at the surface, requiring the use of a silica protecting coating on the magnetic nanoparticles. In contrast, FDH, which is not prone to redox interferences, can exhibit good activity and stability even in the absence of the silica coating. GHD, on the other hand, when in the immobilized form, showed a good compatibility with the FalDH, ADH, and FDH enzymes, as a NAD+/NADH regenerating system. Unfortunately, however, the low conversion rates observed for this enzyme are yet a critical factor, decreasing the yields for the production of methanol from CO2. Fortunately, it has been shown that the overall reaction is not limited by the diffusion of the substrates, indicating that the enzyme immobilization procedure can be carried out effectively, even in separate. Actually, it becomes more effective than the co-immobilization strategy, allowing to explore conveniently the best enzyme performance associated with each specific support.

Although the multienzymatic batch cascade reaction has presented a good conversion rates of CO2 into methanol (147%), there is still plenty room for improvement, including the exploration of more efficient NAD+/NADH recovering systems. At the present time, new promising methodologies are being pursued worldwide, with the hope of reaching a sustainable CO2/methanol conversion technology.

ACKNOWLEDGMENTS

We thank Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) for the financial support (grants: 2008/10177-7, 2013/24725-4)

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  • *
    Contribution to the centenary of the Brazilian Academy of Sciences.

Publication Dates

  • Publication in this collection
    16 Oct 2017
  • Date of issue
    2018

History

  • Received
    06 May 2017
  • Accepted
    01 June 2017
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