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Seasonal behavior of vegetation determined by sensor on an unmanned aerial vehicle

Abstract

Geographic information systems make it possible to obtain fine scale maps for environmental monitoring from airborne sensors on aerial platforms, such as unmanned aerial vehicles (UAVs), which offer products with low costs and high space-time resolution. The present study assessed the performance of an UAV in the evaluation of the seasonal behavior of five vegetation coverages: Coffea spp., Eucalyptus spp., Pinus spp. and two forest remnants. For this, vegetation indices (Excess Green and Excess Red minus Green), meteorological data and moisture of surface soils were used. In addition, Sentinel-2 satellite images were used to validate these results. The highest correlations with soil moisture were found in coffee and Forest Remnant 1. The Coffea spp. had the indices with the highest correlation to the studied soil properties. However, the UAV images also provided relevant results for understanding the dynamics of forest remnants. The Excess Green index (p = 0.96) had the highest correlation coefficients for Coffea spp., while the Excess Red minus Green index was the best index for forest remnants (p = 0.75). The results confirmed that low-cost UAVs have the potential to be used as a support tool for phenological studies and can also validate satellite-derived data.

Key words
Coffea spp

INTRODUCTION

Unmanned aerial vehicles (UAVs) have dynamized Earth’s surface studies by collecting data at low altitudes (Getzin et al. 2012GETZIN S, WIEGAND K SCHÖNING I. 2012. Assessing biodiversity in forests using very high-resolution images and unmanned aerial vehicles. Methods Ecol Evol 3(2): 397-404.). The combination of these platforms with computer vision algorithms ensures the generation of high-quality products, such as orthophotomosaics and three-dimensional (3D) models, which have the potential to detect and identify wildlife and flora classes. These parameters are difficult to distinguish using conventional platforms (Franke et al. 2012FRANKE J, KEUCK V SIEGERT F. 2012. Assessment of grassland use intensity by remote sensing to support conservation schemes. J Nat Conserv 20(3): 125-134., Vermeulen et al. 2013VERMEULEN C, LEJEUNE P, LISEIN J, SAWADOGO P BOUCHÉ P. 2013. Unmanned aerial survey of elephants. PLoS ONE 8(2): e54700., Zhang et al. 2014ZHANG J, HUANG S, HOGG EH, LIEFFERS V, QIN Y HE F. 2014. Estimating spatial variation I Alberta in forest biomass from a combination of forest inventory and remote sensing data. Biogeosciences 11(10): 2793-2808.). Thus, UAVs represent an important tool in agro-environmental studies, considering the imminent needs for conserving natural resources and promoting food security (Anderson & Gaston 2013ANDERSON K GASTON J. 2013. Lightweight Unmanned Aerial Vehicles Will Revolutionize Spatial Ecology. Front in Ecol and the Envir 11(3): 138-146., Koh & Wich 2012KOH LP WICH SA. 2012. Dawn of drone ecology: low-cost autonomous aerial vehicles for conservation. Trop Conserv Sci 5(2): 121-132.).

In this scenario, these platforms appear to be a potential new option for monitoring vegetation phenology (Zeng et al. 2020ZENG L, WARDLOW BD, XIANG D, HU S LI D. 2020. A review of vegetation phenological metrics extraction using time-series, multispectral satellite data. Remote Sens Environ 237: 111511., Klosterman et al. 2018KLOSTERMAN S ET AL. 2018. Fine-scale perspectives on landscape phenology from unmanned aerial vehicle (UAV) photography. Agric For Meteorol 248: 397-407., Dandois & Ellis 2013DANDOIS JP ELLIS EC. 2013. High spatial resolution three-dimensional mapping of vegetation spectral dynamics using computer vision. Remote Sens Environ 136: 259-276.) since they offer new opportunities for the scale-appropriate measurement of ecological phenomena, delivering fine spatial resolution data at user-controlled revisiting periods with relatively low cost (Hardin et al. 2019HARDIN PJ, LULLA V, JENSEN RR JENSEN JR. 2019. Small Unmanned Aerial Systems (sUAS) for environmental remote sensing: challenges and opportunities revisited. Gisci Remote Sens 56(2): 309-322., Anderson & Gaston 2013ANDERSON K GASTON J. 2013. Lightweight Unmanned Aerial Vehicles Will Revolutionize Spatial Ecology. Front in Ecol and the Envir 11(3): 138-146.). In addition, UAVs allow the assessment of vegetation structure, such as the detection and monitoring of natural gaps and species identification for forest inventory and agricultural mapping by vegetation indices (Beniaich et al. 2019BENIAICH A, SILVA MLN, AVALOS FAP, MENEZES MD CANDIDO BM. 2019. Determination of vegetation cover index under different soil management systems of cover plants by using an unmanned aerial vehicle with an onboard digital photographic camera. Semin Ciênc Agrár 40(1): 49-66., Wallace et al. 2016WALLACE L, LUCIEER A, MALENOVSKÝ Z, TURNER D VOPĚNKA P. 2016. Assessment of forest structure using two UAV techniques: A comparison of airborne laser scanning and structure from motion (SfM) point clouds. Forests 7(3): 62., Jorge et al. 2014JORGE LAC, BRANDÃO ZN INAMAZU RY. 2014. Insights and recommendations of use of UAV platforms in precision agriculture in Brazil. In: Neale CMU Maltese A (Eds). Spie Remote Sensing. International Society for Optics and Photonics 9239: 923911-923918., Raymond et al. 2011RAYMOND CM, BROWN G ROBINSON GM. 2011. The influence of place attachment and moral and normative concerns on the conservation of native vegetation: A test of two behavioral models. J Environ Psychol 31(4): 323-335., Ferrier & Drielsma 2010FERRIER S DRIELSMA M. 2010. Synthesis of pattern and process in biodiversity conservation assessment: a flexible whole-landscape modelling framework. Divers Distrib 16: 386-402.). This information is relevant to maximize yields and adjust conservation practices (Bendig et al. 2015BENDIG J, YU K, AASEN H, BOLTEN A, BENNERTZ S, BROSCHEIT J, GNYP ML BARETH G. 2015. Combining UAV-based plant height from crop surface models, visible, and near infrared vegetation indices for biomass monitoring in barley. Int J Appl Earth Obs Geoinf 39: 79-87., Croft et al. 2014CROFT H, CHEN JM ZHANG Y. 2014. The applicability of empirical vegetation indices for determining leaf chlorophyll content over different leaf and canopy structures. Ecol Complex 17: 119-130., Torres-Sánchez et al. 2013TORRES-SÁNCHEZ J, LÓPEZ GRANADOS F, DE CASTRO AI PEÑA-BARRAGÁN JM. 2013. Configuration and specifications of an unmanned aerial vehicle (UAV) for early site-specific weed management. PLoS ONE 8(3): e58210.).

Several studies have applied sensors onboard UAVs to obtain time series data in seasonal vegetation patterns (Klosterman et al. 2018KLOSTERMAN S ET AL. 2018. Fine-scale perspectives on landscape phenology from unmanned aerial vehicle (UAV) photography. Agric For Meteorol 248: 397-407., Klosterman & Richardson 2017KLOSTERMAN S RICHARDSON AD. 2017. Observing spring and fall phenology in a deciduous forest with aerial drone imagery. Sensors 17: 2852., Berra et al. 2016BERRA EF, GAULTON R BARR S. 2016. Use of a digital camera onboard a UAV to monitor spring phenology at individual tree level. In: 2016 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS), p. 3496-3499.), which can be justified by the fact that the collection of this information is similar to the operations of satellite sensors but at low altitudes (Zeng et al. 2020ZENG L, WARDLOW BD, XIANG D, HU S LI D. 2020. A review of vegetation phenological metrics extraction using time-series, multispectral satellite data. Remote Sens Environ 237: 111511., Zhang et al. 2017ZHANG XY ET AL. 2017. Exploration of scaling effects on coarse resolution land surface phenology. Remote Sens Environ 190: 318-330.). Therefore, UAV time series can be useful for fine-scale measurements of vegetation phenology as well as satellite-based product validation (Klosterman et al. 2018KLOSTERMAN S ET AL. 2018. Fine-scale perspectives on landscape phenology from unmanned aerial vehicle (UAV) photography. Agric For Meteorol 248: 397-407.).

However, a few studies have shown that these data are not being properly validated (Berra et al. 2019BERRA EF, GAULTON R BARR S. 2019. Assessing spring phenology of a temperate woodland: a multiscale comparison of ground, unmanned aerial vehicle and Landsat satellite observations. Remote Sens Environ 223: 229-242.), and one of the main challenges in multitemporal studies is still the radiometric calibration of UAV imagery (Berra et al. 2017BERRA EF, GAULTON R BARR S. 2017. Commercial off-the-shelf digital cameras on unmanned aerial vehicles for multitemporal monitoring of vegetation reflectance and NDVI. IEEE Trans Geosci Remote Sens 55: 4878-4886.). Therefore, despite the potential of UAVs to fill the gap between the spatial resolution of satellites and the field scale (Pineux et al. 2017PINEUX N, LISEIN J, SWERTS G, BIELDERS CL, LEJEUNE P, COLINET G DEGRÉ A. 2017. Can DEM time series produced by UAV be used to quantify diffuse erosion in an agricultural watershed? Geomorphology 280: 122-136.), monitoring large areas remains a significant challenge (Hufkens et al. 2012HUFKENS K, FRIEDL M, SONNENTAG O, BRASWELL BH, MILLIMAN T RICHARDSON AD. 2012. Linking near-surface and satellite remote sensing measurements of deciduous broadleaf forest phenology. Remote Sens Environ 117: 307-321., Morris et al. 2013MORRIS DE, BOYD DS, CROWE JA, JOHNSON CS SMITH KL. 2013. Exploring the potential for automatic extraction of vegetation phenological metrics from traffic webcams. Remote Sens 5: 2200-2218.).

Thus, overcoming these limitations is a way of strengthening not only the monitoring of the landscape by UAVs but also contributing to reducing the worldwide loss of remaining forests and managing and conserving ecosystems. According to the FAO (2018)FAO - FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS. 2018. The state of the world’s forests: forest pathways to sustainable development., dominant trends of deforestation persist, and forested areas have decreased 130 million ha worldwide in the last 25 years.

In this context, this study aimed to (i) validate the performance of a RGB sensor carried on a low-cost multirotor UAV for the seasonal study of vegetation and (ii) assess the potential for the use of UAV imagery to validate satellite-derived data. For these objectives, two vegetation indices were utilized: (i) Excess Green and (ii) Excess Red minus Green, in addition to superficial soil samples (0 - 20 cm) and Sentinel-2 satellite images.

MATERIALS AND METHODS

Study area

The study area is located in the municipality of Lavras State of Minas Gerais (Figure 1).

Figure 1
Location map of the study area with the demarcation of the coverages studied in the municipality of Lavras, south of Minas Gerais. FR1: Forest Remnant 1; FR2: Forest Remnant 2; EU: Eucalyptus spp., PI: Pinus spp. and CO: Coffea spp.

Forest Remnant 1 has the largest area (5.8 ha) and has the highest diversity index (Shannon – H’ = 3.90), and it is characterized by a flat topography and an open canopy of approximately 15 m. There are several natural gaps, and the most representative species are Copaifera langsdorfii, Xylopia brasiliensis, Sclerolobium rugosum, Ocotea corymbosa, Cryptocarya aschersoniana, Tapirira obtusa and Ocotea odorifera (Aubert & Oliveira-Filho 1994AUBERT E OLIVEIRA-FILHO AT. 1994. Análise multivariada da estrutura fitossociológica do sub-bosque de plantios experimentais de Eucalyptus spp. e Pinus spp. Rev Árvore 18(3): 194-214.). Forest Remnant 2 is smaller (2.81 ha) and has a typical Cerrado (Savanna) physiognomy. This area has 19 families, 38 species, and 38 genera (H’ = 3.28), with the exclusive occurrence of individuals such as Bowdichia virgiloides, Dalbergia miscolodium, and Qualea grandiflora (Pereira et al. 2010PEREIRA IM, VAN DEN BERG E, PINTO LVA, HIGUCHI P CARVALHO DA. 2010. Evaluation and proposal of connectivity of remnant fragments in the campus of Universidade Federal de Lavras, Minas Gerais. Cerne 16(3): 305-321.).

The areas dominated by Pinus spp. and Eucalyptus spp. are composed of old homogeneous plantations with mature undergrowth. These areas are strongly influenced by the surrounding forest remnants since they represent their connecting units. In addition, they have been severely impacted by fires (Pereira et al. 2010PEREIRA IM, VAN DEN BERG E, PINTO LVA, HIGUCHI P CARVALHO DA. 2010. Evaluation and proposal of connectivity of remnant fragments in the campus of Universidade Federal de Lavras, Minas Gerais. Cerne 16(3): 305-321., Aubert & Oliveira-Filho 1994AUBERT E OLIVEIRA-FILHO AT. 1994. Análise multivariada da estrutura fitossociológica do sub-bosque de plantios experimentais de Eucalyptus spp. e Pinus spp. Rev Árvore 18(3): 194-214.).

The coffee area has a slight declivity of 12% with leveled planting, and crop management makes use of mulching by covering the soil with grass and the implementation of minimum tillage, which creates protective conditions against erosion and superficial rainfall runoffs (V.L. Naves et al., unpublished data).

According to the Köppen classification system, the climate of the study area is mesothermal tropical (Cwb) (Sparovek et al. 2007SPAROVEK G, DE JONG VAN LIER Q DOURADO NETO D. 2007. Computer assisted Koeppen climate classification: a case study for Brazil. Int J Climatol 27(2): 257-266.). The average elevation is 918 m and the mean annual precipitation is 1529.7 mm, and all soils are classified as dystroferric Red Latosols, characterized by a clayed texture, a deep extent and a high level of Fe2O3, MnO and TiO2 (FEAM 2010FEAM - FUNDAÇÃO ESTADUAL DO MEIO AMBIENTE. 2010. Mapas de solos de Minas Gerais. Belo Horizonte: Fundação Estadual do meio Ambiente /UFV/ CETEC/ UFLA / FEAM.).

The region is part of the upstream portion of the Rio Grande watershed and makes up the geomorphological Atlantic Plateau unit with rolling relief in Varginha Complex crystalline rocks (Pinto & Silva 2014PINTO CP SILVA MA. 2014. Mapa Geológico do Estado de Minas Gerais. Codemig/CPRM.). The vegetation is characterized by the transition of the Atlantic Forest to the Cerrado (Savanna), with the presence of the remnants of Montana Semi Deciduous Forest in the Atlantic Forest domain (Oliveira-Filho et al. 2001OLIVEIRA-FILHO AT, CURI N, VILELA EA CARVALHO DA. 2001. Variation in tree community composition and structure with changes in soil properties within a fragment of semideciduous forest in southeastern Brazil. Edinb J Bot 58(1): 139-158.).

Procedure

The research was organized into five stages (Figure 2).

Figure 2
Flowchart with the five stages of study development: (1) Mapping with UAV; (2) Field sampling; (3) Obtaining and correction of Sentinel-2 images; (4) Application of vegetation indices and (5) results.

Unmanned aerial vehicle (UAV)

In the first stage, we used the UAV Phantom 3 (Professional) with a RGB sensor, camera model Sony EXMOR ½.3”, which captures images in real color with lens 94° FOV 20 mm.

Flights were scheduled to run in the middle of each season (2017-2018) to detect seasonal patterns at a height of 60 m and with 80% forward and side overlap. Two grids were adopted: a 50 x 50 m in the remaining forests and another 100 x 50 m in the areas containing Coffea spp., Pinus spp. and Eucalyptus. Mapping of the areas was conducted from 20 autonomous flights that were planned and executed using the Pix4DCapture software.

The images were processed using the commercially available structure-from-motion (SfM) Agisoft Photoscan Professional® v1.2.7 software. A reconstructed mesh surface was derived from the point cloud by using the automatic classification of points procedure based on (i) max angle, (ii) max distance, and (iii) cell size (Panagiotidis et al. 2017PANAGIOTIDIS D, ABDOLLAHNEJAD A, SUROVÝ P CHITECULO V. 2017. Determining tree height and crown diameter from high-resolution UAV imagery. Int J Remote Sens 38(8-10): 2392-2410.). No ground control points (GCPs) were used for image orthorectification.

Satellite

The Sentinel-2 images in Level-2 were obtained from the Earth Explorer portal (USGS), which has a resolution of 10 m in the visible spectrum, processed using the SNAP 2.5 (Sentinels Application Platform) software for atmospheric, terrain and reflectance correction through the sen2cor tool. The dates, sun elevation and sun azimuth for the Sentinel imagery are in Table I. Images from April and June were not analyzed due to the presence of clouds.

Table I
Date, sun zenith angle mean, sun elevation and sun azimuth angle mean of satellite Sentinel-2.

Ground truth

In the field study (stage 3), georeferenced samples were collected from the soil surface (0 - 20 cm) in five areas using a GPS model: GARMIN eTrex Vista H.

A previous pilot study was carried out to determine the representative number of soil samples needed to conduct the research. Thus, 250 surface layer soil samples for each cover were collected from transects in autumn with 50 samples from each covering; it was possible to determine from regression, using weather station data, that 10 samples from each cover type were significant.

Soil sampling campaigns were carried out on the same day as the flights with the collection of 50 samples for organic matter, texture and moisture analysis. However, because coffee harvesting during the summer occurred days before collection, it was not possible to study this vegetation cover in this particular season.

Sampling was carried out randomly along the flight grids. The organic matter was determined by the volumetric method with potassium dichromate (EMBRAPA 1998EMBRAPA - EMPRESA BRASILEIRA DE PESQUISA AGROPECUÁRIA. 1998. Análises químicas para avaliação da fertilidade do solo: métodos usados na Embrapa Solos. Rio de Janeiro: Embrapa Solos.), while the soil texture was obtained by the densitometer method (Black 1986BLACK CA. 1986. Methods of soil analysis. Part I: physical and mineralogical methods. Madison: Soil Science Society of America, 1188 p.). The standard moisture was measured by the gravimetric method (Hillel 1998HILLEL D. 1998. Environmental Soil Physics: Fundamentals, Applications and Environmental Considerations. Academic Press: Waltham, 771 p.), and field measurements were carried out for soil moisture and temperature using sensor reflectometry (Time Domain Reflectometry, TDR - 5, TM Decagon Devices). Principal component analysis (PCA) was conducted to investigate the relationship between soil attributes and coverages.

To assess the seasonality of the vegetation indices, climate information, such as temperature, mean rainfall, and insolation, were obtained from a climatological station located in Lavras from January 2017 to March 2018.

Vegetation indices

The vegetation indices Excess Green (Woebbecke et al. 1995WOEBBECKE DM, MEYER GE, VON BARGEN K MORTENSEN DA. 1995. Color indices for weed identification under various soil, residue and lighting conditions. Trans ASAE 38(1): 259-269.) (Equation 1) and Excess Red minus Green (Meyer & Neto 2008MEYER GE & NETO JC. 2008. Verification of color vegetation indices for automated crop imaging applications. Comput Electron Agric 63(2): 282-293.) (Equation 2) were tested in stage 4 using ArcGIS 10.4.1 (Esri 2017ESRI - ENVIRONMENTAL SYSTEMS RESEARCH INSTITUTE -INC. 2017. ArcGIS Professional GIS for the desktop version 10.4.1 Redlands, California, EUA, Software, 2017.).

E x G = ( 2 ( g r e e n ) ( r e d ) ( b l u e ) ) (1)
E x R m G = ( 2 ( g r e e n ) ( r e d ) ) ( 1.4 ( r e d ) ( g r e e n ) ) (2)

These vegetation indices were selected according to Torres-Sánchez et al. (2013)TORRES-SÁNCHEZ J, LÓPEZ GRANADOS F, DE CASTRO AI PEÑA-BARRAGÁN JM. 2013. Configuration and specifications of an unmanned aerial vehicle (UAV) for early site-specific weed management. PLoS ONE 8(3): e58210. and Saberioon et al. (2014)SABERIOON MM, AMIN MSM, ANUAR AR, GHOLIZADEH A, WAYAYOK A KHAIRUNNIZABEJO S. 2014. Assessment of rice leaf chlorophyll content using visible bands at different growth stages at both the leaf and canopy scale. Int J Appl Earth Obs Geoinf 32: 35-45. who assessed their accuracy with UAVs and presented relevant results. As the aim of this study was to evaluate the potential of low-cost tools based on RGB sensors, indices that had already presented results in similar study applications were chosen (Rasmussen et al. 2016RASMUSSEN J, NTAKOS G, NIELSEN J, SVENSGAARD J, POULSEN RN CHRISTENSEN S. 2016. Are vegetation indices derived from consumer-grade cameras mounted on UAVs sufficiently reliable for assessing experimental plots? Eur J Agron 74: 75-92., Beniaich et al. 2019BENIAICH A, SILVA MLN, AVALOS FAP, MENEZES MD CANDIDO BM. 2019. Determination of vegetation cover index under different soil management systems of cover plants by using an unmanned aerial vehicle with an onboard digital photographic camera. Semin Ciênc Agrár 40(1): 49-66., Zheng et al. 2020ZHENG H, ZHOU X, HE J, YAO X, CHENG T, ZHU Y, CAO W TIAN Y. 2020. Early season detection of rice plants using RGB, NIR-GB and multispectral images from unmanned aerial vehicle (UAV). Comput Electron Agric 169: 105223.). Considering that these indices seek to enhance the influence of vegetation and reduce that of soil, they were suitable for this study’s goals.

The mean value of each vegetation index was extracted from polygons delimited according to the soil sample points georeferenced on the ground, and the threshold scope of the samples under each cover was determined. The orientation of this process was based on three vectors: the translation vector “t”, the rotation vector “r” and the vector of size “s”, which were accessed from elements addressed with the x, y and z suffixes (Esri 2017ESRI - ENVIRONMENTAL SYSTEMS RESEARCH INSTITUTE -INC. 2017. ArcGIS Professional GIS for the desktop version 10.4.1 Redlands, California, EUA, Software, 2017.) (see Supplementary Material - Appendix S1 (Tables SI, SII and Figure S1)). Posteriorly, a mesh of 10 x 10 m was created, a dimension similar to the spatial resolution of the Sentinel-2 images, to extract the mean values from each vegetation index. This procedure minimized the differences due to the different spatial resolutions of these platforms.

Mean values for the cells of each mesh were obtained from a table by considering the number of pixels in the polygons and its maximum, medium and minimum values as well as the sum and standard deviation. The values used for the study are the means for each polygon.

To normalize the orthophotomosaics, Flight 1 (05/02/2017) was used as a reference. Thus, common targets with no significant variation in reflectance were identified among all orthophotomosaics of vegetation indices. Therefore, targets were mainly selected from exposed soil, roofing and asphalt and are represented by a circular geometry of varied sizes. Upon the detection of these areas, the mean values for each were determined using the same methodology adopted in the extraction of vegetation indices, and these values were subjected to a linear regression. Therefore, these equations were applied on the orthophotomosaics for final calibration, and the R² illustrates the procedure effectivity (Table II).

Table II
Equations applied to normalize orthophotomosaics per cover.

The extraction method of the mean values of each vegetation index in the Sentinel-2 images was similar to the aforementioned methods. Thus, in stage 5, means were analyzed by Pearson’s correlation using the data obtained from both platforms to determine the best performance rate in each cover.

RESULTS

Ground analysis

A total of 190 soil samples were collected for the PCA. The PCA results (Figure 3) showed a high correlation between the soil attributes and coverages, suggesting that the vegetation type is considered a soil property indicator.

Figure 3
Principal component analysis (PCA) of cover and soil properties. It is possible to detect that the soil moisture variability of Pinus spp. was similar to Forest Remnant 1 and Forest Remnant 2. (a) Autumn, (b) winter, (c) spring and (d) summer. Filled circle: Coffea spp., Triangle: Eucalyptus spp., X: Pinus spp., Open circle: FR1 and Square: FR2. OM: Organic matter.

As observed in Figure 3, the cover type that showed the strongest association with soil moisture were Coffea spp. and Forest Remnant 1; these were expected to have the highest correlation to the proposed vegetation indices.

Table III presents the variability of moisture and temperature for each coverage per season, which were similar between each areas, except for the Eucalyptus spp., while Figure 4 shows the variability of climatic data in 2017 and 2018.

Figure 4
Climatic variables and flight in the study period (2017/2018).
Table III
Mean values and standard deviation of soil moisture and temperature.

Orthophotomosaics

Regarding the orthophotomosaics, Pinus spp. and Eucalyptus spp. areas have not been evaluated by UAV due to the difficulty of these platforms in mapping homogeneous coverings (Matese et al. 2015MATESE A, TOSCANO P, DI GENNARO SF, GENESIO L, VACARRI FP, PRIMICERIO J, BELLI C, ZALDEI A, BIANCONI R GIOLI B. 2015. Intercomparison of UAV, aircraft and satellite remote sensing platforms for precision viticulture. Remote Sens 7(3): 2971-2990., Pádua et al. 2017PÁDUA L, VANKO J, HRUŠKA J, ADÃO T, SOUSA JJ PERES E MORAIS R. 2017. UAS, sensors, and data processing in agroforestry: a review towards practical applications. Int J Remote Sens 38(8-10): 2349-2391.) formed by vegetal clones. Another factor that may also justify this shortcoming was flying altitudes: because tests were performed at an altitude up to 110 m they did not provide satisfactory results, likely due to the morphology of the small leaves (Matese et al. 2015MATESE A, TOSCANO P, DI GENNARO SF, GENESIO L, VACARRI FP, PRIMICERIO J, BELLI C, ZALDEI A, BIANCONI R GIOLI B. 2015. Intercomparison of UAV, aircraft and satellite remote sensing platforms for precision viticulture. Remote Sens 7(3): 2971-2990.).

However, in other areas, the aerial surveys reached 2 cm spatial resolution (mean value) and allowed the detection and individualization of natural gaps and trees. (Figure 5).

Figure 5
The aerial surveys allowed the detection of natural gaps and trees, which are necessary data for the sustainable management and ecological stability of these areas. In this orthophotomosaic of Forest Remnant 2 in the summer, the tree canopies are indicated in red and natural gaps in blue.

Vegetation indices

The mean values of each vegetation index per season (Table IV) represents seasonal variability and highlights the differences between the two platforms, although they both indicated similar correlation between vegetation dynamics and soil moisture (Figure 6, Table V and Table VI).

Figure 6
Correlation between soil moisture and vegetation indices obtained by the Sentinel-2 and UAV images. (a) Excess Green from Sentinel-2, with the Pinus spp. and Eucalyptus spp. showing lower correlation in relation to the others; (b) Excess Red minus Green from Sentinel-2, the persistence of the low correlation of Pinus spp. and Eucalyptus spp.; (c) Excess Green from UAV, the better correlation of Coffea spp.; (d) Excess Red minus Green, the vegetation index that showed the highest correlation to Forest Remnant 2, although presented the best answer in Coffea spp. FR1: Forest Remnant 1; CO: Coffea spp.; EU: Eucalyptus spp.; FR2: Forest Remnant 2 and PI: Pinus spp.
Table IV
Mean values of vegetation indices across seasons of 2017/2018.
Table V
Correlation between soil moisture and vegetation indices obtained by the Sentinel-2 images.
Table VI
Correlation between soil moisture and vegetation indices obtained by the UAV images.

The index with the highest correlation to Coffea spp. was Excess Green (p = 0.96), although Excess Red minus Green also performed well (p = 0.94). Regarding the forest remnants, highest correlation was in Forest Remnant 1 with the Excess Red minus Green index (p = 0.75), while this relationship for Forest Remnant 2 was not as high (p = 0.37). The Excess Green index (p = - 0.29 and p = - 0.30) was similar for both coverings and did not perform well.

DISCUSSION AND CONCLUSION

The results obtained in this study are noteworthy because the vegetation indices indicated the correlation between vegetation dynamics and soil moisture, i.e., that the availability of moisture is related to evapotranspiration. This facilitates the understanding of the behavior of different vegetable covers in the regional climatic extremes.

The strong associations between meteorological data and vegetation indices are illustrated in Figure 4 and Table IV. In the autumn and summer, during periods of high rainfall and low sunlight, the values were larger and smaller, respectively, than the vegetation indices in other seasons. In winter and spring, the index standards were opposite, explained by the fact that there is a considerable loss of leaves in this period, which adversely affects the spectral response (Ponzoni et al. 2015PONZONI FJ, PACHECO LRF, SANTOS SB ANDRADES FILHO SO. 2015. Caracterização espectro temporal de dosséis de Eucalyptus spp. mediante dados radiométricos TM/Landsat5. Cerne 21(2): 267-275.).

The coffee crop presented the highest correlation, validating the proposed methodology of the research, which leads to important applications of UAV for precision agriculture studies, especially south of the Minas Gerais State (Silva & Alves 2013SILVA FM ALVES MC. 2013. Cafeicultura de precisão. Lavras: Editora UFLA, 227 p.). These results can be expanded to other areas of agricultural interest, and the vegetation indices can contribute to monitoring coffee production on a regional scale. Jeger & Pautasso (2008)JEGER MJ PAUTASSO M. 2008. Plant disease and global change–the importance of long-term data sets. New Phytologist 177(1): 8-11. and Khanal et al. (2017)KHANAL S, FULTON J SHEARER S. 2017. An overview of current and potential applications of thermal remote sensing in precision agriculture. Comput Electron Agric 139: 22-32. also yielded promising results for monitoring soil moisture from UAVs, although these authors employed more robust sensors with mid-infrared channels. Thus, the results of this study are also interesting since they allow the collection of consistent data from platforms with less sensitive sensors and can also contribute to the progress in coffee production. In this scenario, these platforms could contribute to the development of technologies that improve and standardize the local farming techniques, which are still very heterogeneous with different cultivation methods, sizes and management practices of cultivated areas.

Although native remnants have a higher correlation with soil moisture (Figure 3), this was not observed in the vegetation indices. This fact may be explained by the effect of anthropogenic disturbances which are capable of affecting the spectral response of the vegetation (Pawar et al. 2014PAWAR GV, SINGH L, JHARIYA MK SAHU KP. 2014. Effect of anthropogenic disturbances on biomass and carbon storage of dry tropical forest in India. J Appl Nat Sci 6(2): 383-392., Silveira et al. 2019SILVEIRA EMO, ACERBI JÚNIOR FW, SILVA TS MELLO JMD. 2019. Anthropogenic Disturbances Affect the Relationship Between Spectral Indices and the Biometric variables of Brazilian Savannas. Floresta Ambient 26(3): e20180338.). This was confirmed by observing the results of Forest Remnant 2, located in a highly anthropized region with roads, trails, constructions and technogenic deposits (inside and on the edges of the remnants) (Pereira et al. 2010PEREIRA IM, VAN DEN BERG E, PINTO LVA, HIGUCHI P CARVALHO DA. 2010. Evaluation and proposal of connectivity of remnant fragments in the campus of Universidade Federal de Lavras, Minas Gerais. Cerne 16(3): 305-321.), which reported a less significant correlation when compared to Forest Remnant 1, which is located in a slightly more isolated area, and Coffea spp. (Figure 1). Another critical point to consider is if this anthropization reflects the heterogeneity of the natural conditions of the Cerrado (Savanna) remnants in the state of Minas Gerais (Scolforo et al. 2015SCOLFORO HF, SCOLFORO JRS, MELLO CR, MELLO JM FERRAZ AC. 2015. Spatial distribution of aboveground carbon stock of the arboreal vegetation in Brazilian biomes of Savanna, Atlantic Forest and Semi- Arid Woodland. PLoS ONE 10(6): 1-20.).

Conversely, the orthophotomosaics showed great potential to help understand the remnant’s dynamics. The aerial surveys allowed the detection of natural gaps and the individualization of the trees (Figure 5) which are necessary data to inform the sustainable management to ensure the ecological stability of these forest remnants as they influence the composition, distribution, and species richness and promote natural regeneration (Burton et al. 2014BURTON JI, GANIO LM PUETTMANN KJ. 2014. Multi-scale spatial controls of understory vegetation in Douglas-fir–western hemlock forests of western Oregon, USA. Ecosphere 5(12): 1-34., Ward et al. 2018WARD JS, WILLIAMS SC LINSKE MA. 2018. Influence of invasive shrubs and deer browsing on regeneration in temperate deciduous forests. Can J For Res 48(1): 58-67.). Other studies have also implemented the use of UAVs to evaluate these forest attributes and confirmed the potential use of these platforms in collecting rapid, cheap and accurate data at different scales (Getzin et al. 2014GETZIN S, NUSKE RS WIEGAND K. 2014. Using unmanned aerial vehicles (UAV) to quantify spatial gap patterns in forests. Remote Sens 6(8): 6988-7004., Chianucci et al. 2016CHIANUCCI F, DISPERATI L GUZZI D. 2016. Estimation of canopy attributes in beech forests using true colour digital images from a small fixed-wing UAV. Int J Appl Earth Obs Geoinf 47: 60-68.), which are not compatible with conventional aerial or satellite imagery as the spatial resolutions of these data traditionally are inherently coarse and contain pixels with mixed cover (Herrmann & Tappan 2013HERRMANN SM TAPPAN GG. 2013. Vegetation impoverishment despite greening: A case study from Central Senegal. J Arid Environ 90: 50-66.).

It should be noted that the Cerrado (Savanna) represents a vital type of dryland and supports abundant wildlife and large human populations. In the state of Minas Gerais, this biome occupies approximately 33 million ha (Scolforo et al. 2015SCOLFORO HF, SCOLFORO JRS, MELLO CR, MELLO JM FERRAZ AC. 2015. Spatial distribution of aboveground carbon stock of the arboreal vegetation in Brazilian biomes of Savanna, Atlantic Forest and Semi- Arid Woodland. PLoS ONE 10(6): 1-20.), and the deforestation rate is currently approximately 1.6% per year (Arantes et al. 2016ARANTES AE, FERREIRA LG COE MT. 2016. The seasonal carbon and water balances of the Cerrado environment of Brazil: past, present, and future influences of land cover and land use. ISPRS J Photogramm Remote Sens 117: 66-78.) which has already affected more than 40% of the original area of this biome (Sano et al. 2010SANO EE, ROSA R, BRITO JLS FERREIRA LG. 2010. Land Cover Mapping of the tropical savanna region in Brazil. Environ Monit Assess 166(1-4): 113-124., Lathuillière et al. 2016LATHUILLIÈRE MJ, COE MT JHONSON MS. 2016. A review of green and blue-water resources and their tradeoffs for future agricultural production in the amazon basin: What could irrigate agriculture mean for Amazonia? Hydrol Earth Syst Sci 20(6): 2179-2194.). Thus, these results also confirm that the use of high precision tools, such as UAVs, can contribute to planning the conservation and maintenance of the Cerrado (Savanna) remnants, which are highly threatened by the conversion of native vegetation into agricultural areas.

Therefore, the response of vegetation cover to soil moisture and climatic variables has been confirmed, despite the areas of Pinus spp. and Eucalyptus spp. having not been monitored by the UAV due to homogeneities of these stands. The results of the Excess Green and Excess Red minus Green indices obtained with the Sentinel-2 also did not provide valid results, even with the soil moisture variability of Pinus spp. being similar to that of Forest Remnant 1 and Forest Remnant 2. However, for future research aimed at the specific mapping of Pinus spp. and Eucalyptus spp., the results are relevant because it enabled the recommendation of higher flight altitudes than those tested.

Last, the contribution of this study is to corroborate the feasibility of UAV and free satellite images as a low-cost alternative for seasonal monitoring of natural and planted vegetable coverings, with potential to have positive impacts on precision agriculture and the conservation and maintenance of forest remnants.

This proposal was not to compare the performance of the two platforms but to validate the potential of UAVs for studies on vegetation cover. The results confirm that, despite the spatial resolution being a differential of the UAVs in local analyses, satellites are still a steadier alternative to access the seasonality of different vegetation types on a regional scale. However, this does not prevent the integrated use of these platforms in agri-environmental research.

Thus, the conclusions of this research are as follows:

  • Vegetation indices derived from sensors onboard unmanned aerial vehicles were effective in the seasonal monitoring of vegetation and affirmed the application of this work in precision agriculture for Coffea spp.

  • Monitoring the conservation and management of forest remnants can be effectively done through the combination of vegetation indices and orthophotomosaic analyses since the finer scale of these products facilitates the identification and monitoring of natural gaps and tree canopies, which are essential for understanding forest dynamics.

  • Although not being evaluated by from unmanned aerial vehicles, for areas of Pinus spp. and Eucalyptus spp., the tests performed on these coverages are relevant for future research that seeks to monitor of these specific species due to the homogeneity of these canopies.

  • The highest correlation coefficients for Coffea spp. was the Excess Green index and the Excess Red minus Green index was highest for Forest Remnant 1 and Forest Remnant 2. The performance of these visible spectrum indices has confirmed the potential of low-cost tools in meeting agricultural and environmental needs, which can lead to appropriate ecological management and conservation practices as well as strengthen national coffee productivity.

  • Finally, it was confirmed that UAV imagery has the potential to validate satellite-derived data and that low-cost platforms can strengthen large-scale monitoring.

ACKNOWLEDGMENTS

To the Graduate Program in Environmental Sciences (UNIFAL-MG) for supporting the development of the first author’s dissertation, under the coordination of Professors Ronaldo Luiz Mincato and Marx Leandro Naves Silva. To the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) for granting a scholarship. To the contributions of Professors Mike R. James and John N. Quinton, from Lancaster Environment Center at Lancaster University, Lancaster (UK), for technical support in the use of UAVs and associated software. To (CAPES), the Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) (processes 202938 / 2018-2 and 306511 / 2017-7) and the Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG) (processes CAG-APQ-00802-18 and CAG-APQ-01053-15) for granting scholarships and financial support. This study was partially funded by the (CAPES) - Financial Code 001.

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Publication Dates

  • Publication in this collection
    09 Apr 2021
  • Date of issue
    2021

History

  • Received
    8 May 2020
  • Accepted
    18 Dec 2020
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