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Brazilian Journal of Infectious Diseases

Print version ISSN 1413-8670

Braz J Infect Dis vol.11 no.2 Salvador Apr. 2007

http://dx.doi.org/10.1590/S1413-86702007000200011 

ORIGINAL PAPERS

 

Short-interfering RNAs as antivirals against rabies

 

 

Paulo Eduardo BrandãoI; Juliana Galera CastilhoII; Willian FahlII; Pedro Carnieli Jr.II; Rafael de Novaes OliveiraII; Carla Isabel MacedoII; Maria Luiza CarrieriII; Ivanete KotaitII

ISchool of Veterinary Medicine, University of São Paulo
IIPasteur Institute; São Paulo, SP, Brazil

Address for correspondence

 

 


ABSTRACT

This study aimed to test in vitro a RNA-interference based antiviral approach for rabies with short-interfering RNAs (siRNAs) against rabies virus nucleoprotein mRNA. BHK-21 cells were infected with serial dilutions of PV rabies virus strain and transfected with a pool of three siRNAs. Direct immunofluorescence staining showed a 5-time decrease in virus titer when compared to a non-treated plate, showing a promising new approach to the development of antivirals for rabies treatment.

Key-Words: siRNA, rabies, antiviral.


 

 

Rabies is a fatal encephalitis that affects the Mammalia [1] and human cases of the disease are prevalent mainly in undeveloped countries; affected patients experiment extensive physical suffering. Antivirals currently used against rabies include ketamine, midazolam, ribavirin and amantadine, but only one successful case of human treatment happened in 2004 [2]; furthermore, rabies virus still circumvents most actions aimed to treat and control rabies and to create consensual scientific and political efforts on this area and only very few studies focus on antivirals for this disease.

The RNA interference (RNAi) is based on the ability of double-stranded RNAs, e.g., short-interfering RNAs (siRNAs), to specifically trigger mRNA degradation by the cellular RNA-induced silencing complex (RISC) [3], an ubiquitary cytoplasmatic protein complex that harbors dsRNA-binding domains and an exonuclease domain activated by the first after a dsRNA binds to it [4]. This approach has been successful in in vitro and in vivo assays for Hepatitis C virus [5] and in vitro assays for Dengue virus and HIV [6], but no attempt to apply RNAi against rabies virus infection has been reported so far.

The aim of this study was to test the effect of RNA interference on the decrease of rabies virus titer in vitro.

 

Materials and Methods

Three AA(N19)TT siRNAs were designed with antisense strands complementary to rabies virus nucleoprotein (N) mRNA from 221 sequences retrieved from the Genbank (http://www.ncbi.nlm.nih.gov/) aligned by the CLUSTAL/W [7] method with Bioedit 7.0.5.3 [8]: RNA124 (sense 5' GCCUGAGAUUAUCGUGGAG 3'/ antisense 5' AUCCACGAUAAUCUCAGGC 3'), RNA750(sense5'GCACAGUUGUCACUGCUUC3'/antisense5'UAAGCAGUGACAACUGUGC 3') and RNAB (sense 5' GACAGCUGUUCCUCACUCG 3'/ antisense 5' AGAGUGAGGAACAGCUGUC 3'), targeting the regions starting at positions 123, 749 and 903 of rabies virus nucleoprotein gene, respectively, in an area that codes for a highly functional constrained portion of N protein, which plays a major role in nucleocapsid assembly [9].

All three siRNAs were submitted to BLAST/n at http://www.ncbi.nlm.nih.gov/BLAST/ and no significant non-N gene homology was found. As the secondary structure of a given RNA is a key feature to the effectiveness of RNAi [10], the secondary structure of the target mRNA was evaluated at 35, 37, 39 and 42 ºC with RNADraw v 1.1 (Mazura Multimedia, Dalagatan 9C:320, 11324 Stockholm, Sweden), based on a broad range of body temperatures that a normal person and a rabid patient can experience [11]. No alteration was found to siRNAs 750 and B; regarding siRNA 124, minor secondary structure instability of the target site was found at the described temperatures.

BHK-21 cells grown in MEM/ 5% fetal bovine sera (FBS) in 24-well plates at 37ºC with 5% CO2 for 48 hours were inoculated with the Pasteur virus (PV) rabies reference strain diluted 10-fold in FBS-free MEM and incubated for two hours at 37º with 5% CO2 in a volume of 500 µL/dilution. Next, the monolayers were transfected with a pool containing 20 pmols of each of the three siRNA in DEPC-treated water with Lipofectamine 2000 (InvitrogenÔ, Carlsbad, CA, USA). A control plate was made with the same virus dilution, but no siRNA was added. Further negative controls included wells inoculated with 100 µL Lipofectamine 2000 and DEPC-treated water.

Twenty-two hours post-inoculation, both the control and the siRNA-treated plates were tested by direct fluorescent antibody test (DFA) with anti-rabies virus nucleocapsid antibody conjugated with fluorescein isothiocianate (Biorad LaboratoriesÔ, Hercules, CA, USA) and observed with an epifluorescence microscope. Virus titers were calculated by the Reed-Müench method and fluorescence intensity was quantified as +1 (at least one fluorescent focus in the well), +2 (about 50% of the monolayers with fluorescence), +3 (about 75% of the monolayers with fluorescence) and +4 (coalescently fluorescent monolayers).

 

Results

The titer of the PV strain in the control plate was 104,375 TCID50/500 µL while, in the siRNA-treated plate, the titer fell to 103,625 TCID50, about 5 times lower. Fluorescence intensity in the control plate varied from +3 to +4 in 10-2 to +1 in 10-4 and fell to +2 in 10-2 dilution and to +1 in 10-3 dilution on the siRNA-treated plate. No cytotoxic or cytopathic effect was observed in the monolayers inoculated with Lipofectamine 2000 or DEPC-treated water.

 

Conclusion

We conclude that the pool of siRNAs used herein was able to significantly inhibit rabies virus replication in vitro, with no cell damage as depicted from the negative controls and it shows that RNAi can be seen as a promising new approach to the development of antivirals for rabies treatment.

 

References

1. Jackson A.C., Wunner W.H. Rabies. San Diego, USA: Academic Press, 2002.        [ Links ]

2. Willoughby R.E. Jr., et al. Survival after treatment of rabies with induction of coma. N Engl J Med 2005;352:2508-14.        [ Links ]

3. Dykxhoorn D.M., Novina C.D., Sharp P.A. Killing the messenger: short RNAs that silence gene expression. Nat Rev Mol Cell Biol 2003;4:457-67.        [ Links ]

4. Agrawal N., et al. RNA interference: biology, mechanism, and applications. Microbiol Mol Biol Rev 2003;67:657-85.        [ Links ]

5. Wang Q.C., Nie Q.H., Feng Z.H. RNA interference: antiviral weapon and beyond. World J Gastroenterol 2003;9:1657-61.        [ Links ]

6. Tan F.L., Yin J.Q. RNAi, a new therapeutic strategy against viral infection. Cell Res 2004;14:460-6.        [ Links ]

7. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-80.        [ Links ]

8. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 1999;41:95-8.        [ Links ]

9. Kouznetzoff A., Buckle M., Tordo N. Identification of a region of the rabies virus N protein involved in direct binding to the viral RNA. J Gen Virol 1998;79:1005-13.        [ Links ]

10. Ui-Tei K., et al. Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference. Nucleic Acids Res 2004;32:936-48.        [ Links ]

11. Burton E.C., et al. Rabies encephalomyelitis: clinical, neuroradiological, and pathological findings in 4 transplant recipients. Arch Neurol 2005;62:873-82.        [ Links ]

 

 

Address for correspondence:
Prof. Dr. Paulo Eduardo Brandão
Departamento de Medicina Veterinária Preventiva e Saúde Animal
Faculdade de Medicina Veterinária e Zootecnia
Universidade de São Paulo
Avenida Professor Doutor Orlando Marques de Paiva, 87, Cidade Universitária
Zip code: 05508-000. São Paulo, SP, Brazil
Phone: 55-11-3091-7655; Fax: 55-11-3091-7928
E-mail: paulo7926@yahoo.com.

Received on 16 October 2006; revised 7 March 2007.