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Genetics and Molecular Biology

Print version ISSN 1415-4757On-line version ISSN 1678-4685

Genet. Mol. Biol. vol.42 no.2 Ribeirão Preto Apr./June 2019  Epub June 27, 2019

https://doi.org/10.1590/1678-4685-gmb-2018-0139 

Evolutionary Genetics

Comparative cytogenetics of nine populations of the Rhinella genus (Anura, Bufonidae) with a highlight on their conservative karyotype

Daniel Pacheco Bruschi1  2 
http://orcid.org/0000-0003-2181-1788

Deborah Yasmim Sousa1 

Amanda Soares1 

Klélia Aparecida de Carvalho3 

Carmen Sílvia Busin4 

Natália Cristine Ficanha4 

Albertina Pimentel Lima5 

Gilda Vasconcellos Andrade6 

Shirlei Maria Recco-Pimentel2 

1Departamento de Genética, Setor de Ciências Biológicas, Universidade Federal do Paraná (UFPR), Curitiba, PR, Brazil

2Departamento de Biologia Estrutural e Funcional, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, SP, Brazil

3Departamento de Genética e Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, SP, Brazil

4Instituto de Ciências Biológicas, Programa de Pós-Graduação em Ciências Ambientais (PPGCiAmb), Universidade de Passo Fundo (UPF), Passo Fundo, RS, Brazil

5Instituto Nacional de Pesquisas da Amazônia (INPA), 69060-001 Manaus, AM, Brazil

6Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Federal do Maranhão (UFMA), São Luís, MA, Brazil


Abstract

The genus Rhinella is one of the most diverse groups of bufonid toads, currently composed by 93 valid species and naturally distributed throughout different Neotropical ecoregions. Here, we analyze nine Brazilian populations of toads representing species of the Rhinella margaritifera and Rhinella marina groups. These new data include the first description of the R. hoogmoedi and R. proboscidae karyotypes, as well as other taxonomically unresolved forms. Chromosomal analysis of the populations revealed pronounced chromosomal uniformity (2n=22), including the diploid number and chromosomal morphology. Three different NOR-bearing chromosomes were identified: in the subterminal region of pair 10q in R. hoogmoedi, Rhinella sp. 1 and Rhinella sp. 2, in subterminal region of 7p in R. proboscidae and Rhinella cf. margaritifera while in R. henseli and R. icterica was detected in interstitial region of 7p. Karyotypic uniformity of the genus permits the inference of interspecific chromosome homologies and evolutionary changes in the NOR-bearing chromosome may represent an informative character in species group level. The review of the cytogenetic data of the Rhinella species together with the new karyotypes reported here contributes to the understanding of the chromosomal evolution of these toads, which karyotypes are highly conserved despite the ample distribution of many forms.

Keywords: Bufonid toads; nucleolar organizing region; chromosomal evolution

Cytogenetic data provide a powerful tool for the evaluation of the taxonomic (Cuevas, 2008; Fávero et al., 2011; Funk et al., 2012) and evolutionary relationships (Veiga-Menoncello et al., 2014) among anuran species. The understanding of chromosomal characters helps to identify synapomorphies (Cunningham and Cherry, 2004; Targueta et al., 2012; Suárez et al., 2013; Ferro et al., 2018) and homoplasies (Cardozo et al., 2011), and when combined with molecular phylogenetic inferences, these can contribute to the understanding of the role of chromosomal rearrangements in the diversification of a lineage (Veiga-Menoncello et al., 2014).

Evolutionary analysis of anuran cytogenetics has provided important additional insights for phylogenetic inferences (Lourenço et al., 2015; Targueta et al., 2018). Recent shifts in analytical approaches have allowed more systematic evaluations,that have traced evolutionary changes in the chromosomal complement (e.g., Lourenço et al., 2008), both within and among anuran groups. However, the lack of cytogenetic data for many groups remains a limiting factor, especially if taking into account the considerable taxonomic richness of the order Anura, which has at least 7,058 species (sensuFrost, 2019). An interesting example is the genus Rhinella, a cosmopolitan group currently composed of 92 valid species (sensuFrost, 2019), although there is considerable evidence of a number of cryptic species and undescribed taxa (Fouquet et al., 2007a). Most of the species of this genus are arranged in species groups (R. crucifer, R. festae, R. granulosa, R. margaritifera, R. marina, R. spinulosa, and R. veraguensis), but some taxa have not been assigned to any existing group (Chaparro et al., 2007; Moravec et al., 2014).

Cytogenetic analyses of the genus Rhinella revealed a pronounced chromosomal uniformity, including the diploid number and chromosomal morphology, and some species, such as Rhinella icterica, Rhinella jimi, and Rhinella schneideri, cannot even be distinguished by their C-banding or the distribution of their NOR (Kasahara et al., 1996; Amaro-Ghilardi et al., 2007). However, alternative NOR-bearing chromosomes have been identified in other species of the genus (Silva, 2010; Baraquet et al., 2011). The present study is based on a compilation of the available chromosomal data for Rhinella, combined with karyotypes obtained from nine Brazilian populations of toads representing species of the Rhinella margaritifera and Rhinella marina groups. These new data include the first description of the karyotypes of two species of the R. margaritifera group (Rhinella hoogmoedi and Rhinella proboscidae), as well as other taxonomically unresolved forms.

The specimens and their respective collecting localities are listed in Table 1. The collection of specimens was authorized by SISBIO/Chico Mendes Institute for the Conservation of Biodiversity, through license number 20266-1. Voucher specimens were deposited in the Zoology Museum (ZUEC) “Prof. Dr. Adão José Cardoso” at Campinas State University (UNICAMP) in Campinas, SP, Brazil. The chromosomal samples were prepared from suspensions of intestinal epithelial cells, following King and Rofe (1976) and Schmid (1978). The chromosomes were stained with 10% Giemsa or submitted to the Ag-NOR technique (Howell and Black, 1980). The chromosomes were ranked and classified according to the criteria of Green and Session (1991). In addition to these primary data, the Web of Science (Institute of Scientific Information, Thomson Scientific) bibliographic database was searched for all the published cytogenetic data available on the genus Rhinella.

Table 1 Number of Rhinella specimens analyzed and their localities in Brazil. 

Species Number of specimens analyzed Collection locality Geographical coordinates
R. hoogmoedi 2 M + 3 F Bertioga, SP 23º48’23.15”S; 46º03’32.23”O
R. proboscidae 2 M + 1 F Reserva Florestal Adolpho Ducke, Manaus, AM 2º57’48.04”S; 59º55’22.20”O
Rhinella sp. 1 2 M + 1 F Bacabeira, MA 2º56’28.32”S; 44º21’41.35”O
Rhinella sp. 2 5 M Parque Viruá, RR 1º17’26.82”N; 61º09’09.20”O
Rhinella cf. margaritiffera 5 M + 1 F Laranjal do Jari, AP 1º05’39.49”N; 53º13’04.98”O
R. henseli 2 M + 5 F FLONA,sPasso Fundo, RS 28º18’59.10"S; 52º11’26.42’O
R. henseli 3 M + 3 F Sertão, RS 28º02’33.46"S; 52º12’58.56"O
R. icterica 3 M + 2 F FLONA, Passo Fundo, RS 28º18’59.10"S; 52º11’26.42’O
R. icterica 8 M Sertão, RS 28º02’33.46"S;52º12’58.56"O

M: male; F: female

Chromosomal analysis of the nine Rhinella populations revealed conservative karyotype features, beginning with the diploid number (2n = 22), which was consistent across all species (see Table 2; Figure 1). All karyotypes consist of six metacentric (pairs 1–3, 5, 8 and 9; Fig. 1) and five submetacentric pairs (pairs 4, 6, 7, 10 and 11; Fig.1). While relatively few Rhinella species have been analyzed cytogenetically (Table 2), the available data are remarkable for their uniformity, with only metacentric and submetacentric pairs being found in any species. Small differences in the number of metacentric and submetacentric pairs are found in some studies (Amaro-Ghilardi et al., 2008; Baraquet et al., 2011), however, it seems likely that this has been due to the application of different criteria for the classification of the chromosomes, rather than any real variation among species in their karyotypes.

Table 2 Detailed cytogenetic data available for species of the Rhinella genus. 

Species 2n FN NOR-bearing chromosome Reference
R. margaritifera group
R. hoogmoedi 22 44 St 10(p) Present study
R. margaritifera 22 44 St 10(q) Baldissera et al. (1999)
Rhinella sp. 1 22 44 St 10(q) Present study
Rhinella sp. 2 22 44 St 10(q) Present study
Rhinella cf.margaritifera 22 44 St 7(p) Present study
R. proboscidea 22 44 St 7(p) Present study
R. crucifer group
R. crucifer 22 44 St 7(p) Kasahara et al., (1996) Silva (2010)
R. ornata 22 44 St 7(p) Silva (2010)
R. pombali 22 44 St 7(p) Silva (2010)
R. marina group
R. arenarum 22 44 Int 7 (p) Baldissera et al. (1999) Baraqueti et al. (2011)
R. icterica 22 44 Int 7 (p) Kasahara et al. (1996) Baldissera et al. (1999) Azevedo et al. (2003) Present study
R. marina 22 44 Int 7 (p) Baldissera et al,(1999)
R. schneideri 22 44 Int 7 (p) Kasahara et al,(1996) Azevedo et al. (2003) Amaro-Ghilardi et al. (2008) Baraquet et al.,(2011)
R. rubescens 22 44 Int 7 (p) Amaro-Ghilardi et al.,(2008)
R. jimi 22 44 Int 7 (p) Amaro-Ghilardi et al. (2008)
R. achavali 22 44 Int 7 (p) Kolenc et al. (2013)
R. henseli 22 44 Int 7 (p) Present study
R. granulosa group
R. granulosa 22 44 Ter 5(q) Baldissera et al. (1999)
R. pygmaea 22 44 Ter 5(q) Baldissera et al. (1999)
R. fernandezae 22 44 n.e. Baraquet et al. (2011)
R. spinulosa group n.e. n.e. n.e. n.e.
R. veraguensis group n.e. n.e. n.e. n.e.
R. festae group n.e. n.e. n.e. n.e.
R. achalensis (not assigned to any group) 22 44 Int10(p)* Baraquet et al. (2011)

q = long arm; p = short arm; St= subtelocentric; int =interstitial position; per = pericentromeric position; ter = terminal position in the chromosome; n.e. = not examined; *only secondary constriction information.

Figure 1 Karyotypes of five species of the Rhinella margaritifera (A-E) and Rhinella marina (F-G) groups from Brazil, based on Giemsa staining: (A) R. hoogmoedi; (B) R. proboscidae; (C) Rhinella sp. 1; (D) Rhinella sp. 2 and (E) Rhinella cf. margaritifera; (F) R. ictarica from Sertão, RS; (G) R. henseli, from Sertão, RS. 

Three different NOR-bearing chromosomes were identified in the present study. In R. hoogmoedi (Bertioga, SP), Rhinella sp. 1 (Bacabeira, MA), and Rhinella sp. 2 (Parque Viruá, RR), the silver impregnation method detected a NOR site in the subterminal region of the long arm of pair 10, while in R. proboscidae (Reserva Ducke, AM) and Rhinella cf. margaritifera (Laranjal do Jari, AP) the NOR was located in the subterminal region of the short arm of the homologs of pair 7 (Figure 2). In two species of the R. marina group, Rhinella henseli, and Rhinella icterica, from both Passo Fundo and Sertão (RS), NOR-bearing chromosomes were detected in the interstitial region of the short arm of the homologs of pair 7, in both sampled populations (Figure 2).

Figure 2 Karyotypes of five species of the Rhinella margaritifera (A-E) and Rhinella marina (F-G) groups from Brazil stained by the Ag-NOR method: (A) R. hoogmoedi; (B) R. proboscidae; (C) Rhinella sp. 1; (D) Rhinella sp. 2, and (E) Rhinella cf. margaritifera; (F) R. ictarica, from Sertão, RS; (G) R. henseli, from Sertão, RS. The boxes indicate the NOR-bearing chromosomes. 

A similar degree of uniformity has been observed in inter-population cytogenetic studies of other Rhinella species. For example, considerable karyological uniformity has been found in the R. icterica populations from three sites in the Brazilian state of São Paulo (Kasahara et al., 1996; Baldissera et al., 1999; Azevedo et al., 2003) and in the two populations from Rio Grande do Sul (present study). The cururu toad, R. icterica, occurs in southern Brazil, ranging from Rio Grande do Sul in the South to Bahia in the Northeast, as well as Minas Gerais and Goiás, eastern Paraguay, and extending westward to Missiones in Argentina. It is considered a cosmopolitan species, occurring in different habitats and altitudes, including within the Atlantic Forest biome. The cytogenetic data available on the populations of R. schneideri, another species distributed widely in South America, indicate a similar pattern of uniformity (Kasahara et al., 1996; Azevedo et al., 2003; Amaro-Ghilardi et al., 2007; Baraquet et al., 2011).

The overview of the data available for the different Rhinella species (Table 2) indicates that the position of the NOR site is relatively stable within phenotypic groups in the genus. The Rhinella species groups are determined based on phenotypic criteria (Frost, 2018), and while the monophyly of the Rhinella granulosa group has received support from molecular phylogenetic analyses (Pereyra et al., 2016), this has not been confirmed in the others. Karyotype data are available for four of these species groups (Table 2). In all the species of the Rhinella crucifer group, the NOR is found in the subtelocentric region of pair 7p, whereas in the R. marina group, it is found in an interstitial region of the 7p, and in the R. granulosa group, it is located in the terminal region of the homologs of pair 5q. In the R. margaritifera group, by contrast, the NOR site is found in the subterminal region of the homologs of pair 10q or the interstitial region of pair 7p (Table 2).

As the karyotypic uniformity of the genus permits the inference of interspecific chromosome homologies, it seems reasonable to conclude that the evolutionary changes in the NOR-bearing chromosome may represent a putative synapomorphy in each species group. However, the confirmation of this hypothesis would require the analysis of a much larger dataset, for a more reliable evaluation of potential synapomorphies. If confirmed, the variation in the characteristics of the NOR-bearing chromosomes would provide valuable insights for the understanding of the phylogenetic relationships among the Rhinella species groups. In the R. granulosa group, for example, Pereyra et al. (2016) identified NORs in the homologs of pair 5 as an additional synapomorphy in this group. A similar scenario can be inferred for both the R. crucifer and R. marina groups, but not the R. margaritifera group, given the variation already observed in the NOR-bearing chromosomes of the different species of this group.

The R. margaritifera group is currently composed of 19 species (Vaz-Silva et al., 2015), with the NOR being found in the homologs of pair 10 (long arm) in R. hoogmoedi (present study), and in Rhinella sp. 1 from Maranhão and Rhinella sp. 2 from Roraima. Baldissera et al. (1999) described the karyotype in specimens of the R. margaritifera group from Tucuruí, in the Brazilian state of Pará. In the present study, three populations (Rhinella sp. 1, Rhinella sp. 2, and Rhinella cf. margaritifera) were assigned to the R. margaritifera group based on morphological and biogeographical criteria, although it was not possible to determine the taxonomic status of these populations based on their karyotypes. Despite their morphological similarities, the Rhinella cf. margaritifera specimens from Laranjal do Jari can be distinguished from all the other populations assigned to the R. margaritifera group based on the NOR-bearing chromosome and by phenotypic features (Lima - personal observation), which may indicate the presence of a novel taxonomic entity, which requires further investigation.

The taxonomic status of the species of the R. margaritifera group remains uncertain, and phylogenetic inferences indicate the existence of a number of cryptic lineages, and a possible species complex within this group (Fouquet et al., 2007a). This reinforces the need for a thorough taxonomic review of the arrangement of the R. margaritifera group in the Amazon region. Molecular approaches have been effectively applied to the recognition and description of many new Rhinella species (Fouquet et al., 2007b; Moravec et al., 2014), and it would almost certainly provide important insights into the delimitation of the species within the R. margaritifera group.

The species of the Rhinella margaritifera group are distributed in northern South America and the Central America forest domain, except for R. hoogmoedi (Caramaschi and Niemeyer, 2003), which inhabits the Atlantic Forest biome, and R. scitulla, R. ocellata, R. sebbeni, and R. paraguayensis, which occur in the Brazilian Cerrado savanna (Ávila et al., 2010; Vaz-Silva et al., 2015). However, the forest-dwelling species tend to present high levels of individual variation in morphological features, which limits the usefulness of these attributes for the discrimination of species. Santos et al. (2015) identified populations from western Ecuador and Panama, frequently assigned to R. margaritifera species, as R. alata, which has helped to resolve the confusing zoogeography of the R. margaritifera complex. However, the status of the populations of the R. margaritifera group from the east of the Andes remains unresolved, and the phylogenetic inferences of Fouquet et al. (2007a) indicated the potential existence of at least five distinct taxa identified as R. margaritifera in Brazil and French Guiana.

The R. proboscidae karyotype is described here for the first time, and it presents a NOR on the homologs of pair 7, a condition different from that of the other species of the R. margaritifera group. While the taxonomy and arrangement of the species in this group are complex (Fouquet et al., 2007a), it has been diagnosed by the presence of an expansion of the posterior ramus of the pterygoid (Pramuk, 2006), a putative morphological synapomorphy that supports the R. margaritifera group. However, this putative phenotypic synapomorphy has not been formally tested. Rhinella proboscidae occurs along the Amazon River between Peru and Manaus, in Brazil, the locality sampled in the present study. The morphological characters of these populations support their inclusion in the R. margaritifera group. In contrast with the other species groups, however, in which the NOR-bearing chromosome represents a putative synapomorphy, two distinct scenarios are equally possible for the R. margaritifera group: (1) the NOR on pair 10 is a chromosomal synapomorphy in this group and the NOR on pair 7 of R. proboscidae represent a character reversion; or (2) the retention of an ancestral polymorphism. Unfortunately, the lack of a complete phylogenetic reconstruction that includes representatives of all the Rhinella groups hampers more conclusive inferences on the chromosomal evolution of this genus. In the specific case of the R. margaritifera group, a more systematic analysis of monophyly based on the investigation of specific molecular markers would likely provide decisive insights into the evolution of this group.

The conservative arrangement of the NOR-bearing chromosomes in the different Rhinella groups highlights the potential contribution of cytogenetic data for the identification of diagnostic synapomorphies in species groups or clades. A similar approach has been applied successfully in other amphibian groups (see Grant et al., 2017; Targueta et al., 2018). For example, comparative cytogenetics and the allocation of chromosomal characters (morphology and NOR sites) in a phylogenetic tree inferred from molecular markers allowed Cardozo et al. (2011) to identify three potential synapomorphies in the genus Ololygon (Scinax catharinae clade – Duellman et al., 2016). Lourenço et al. (2015) also identified the interstitial C-band in chromosome pair 5 as a synapomorphy of the Physalaemus cuvieri species group.

Another relevant feature of Rhinella genus is the high frequency of hybridization and introgression events (Azevedo et al., 2003; Narvaes and Rodrigues 2009; Sequeira et al., 2011; Guerra et al., 2011; Pereyra et al., 2015) in areas of sympatry, mainly in the Rhinella marina group. As chromosomal features may represent important pre- or post-zygotic barriers to reproduction, groups with a uniform karyotype, such as those found in Rhinella, may reflect the relaxation of any isolation mechanism, which would further contribute to the high frequency of hybridization events observed in this genus. For example, Azevedo et al. (2003) identified an intermediate form between Rhinella icterica and Rhinella schneideri in a sympatric zone, based on the banding patterns of seroproteins analyzed by electrophoresis, even though the intermediate form presented no modification of the karyotype in comparison with the parental species.

Overall, it is hoped that this review of the cytogenetic data available for the Rhinella species, together with the new karyotypes reported here, will contribute to the understanding of the mechanisms of evolutionary changes that led to the diversification of these toads. Despite the ample distribution of many forms, karyotypes are highly conserved in most cases.

Acknowledgments

We thank the Fundação de Amparo a Pesquisa do Estado de São Paulo (FAPESP 2016/07717-6), Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES/PROAP – Finance Code 001) for the scholarships provided to DYS and AAS, and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq/PQ/312286/2015-5).

Conflict of interest

The authors declare that they have no competing interests.

Author contributions

DPB conduced the experiments, conceived and designed the study and wrote; DYS, AS and NCF analyzed the data; APL and GVA collected specimens and helped to identify the specimens; KAC processed material of specimens; CSB and SMR designed the study and wrote the manuscript. All authors read and approved the final version.

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Associate Editor: Yatiyo Yonenaga-Yassuda

Received: May 15, 2018; Accepted: July 17, 2018

Send correspondence to Daniel Pacheco Bruschi, Laboratório de Citogenética Animal e Mutagênese Ambiental, Universidade Federal do Paraná (UFPR), 81531-980 Curitiba, Paraná, Brazil. E-mail: danielpachecobruschi@gmail.com.

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