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Process optimization for production and purification of a thermostable, organic solvent tolerant lipase from Acinetobacter sp. AU07

ABSTRACT

The purpose of this study was to isolate, purify and optimize the production conditions of an organic solvent tolerant and thermostable lipase from Acinetobacter sp. AU07 isolated from distillery waste. The lipase production was optimized by response surface methodology, and a maximum production of 14.5 U/mL was observed at 30 ºC and pH 7, using a 0.5% (v/v) inoculum, 2% (v/v) castor oil (inducer), and agitation 150 rpm. The optimized conditions from the shake flask experiments were validated in a 3 L lab scale bioreactor, and the lipase production increased to 48 U/mL. The enzyme was purified by ammonium sulfate precipitation and ion exchange chromatography and the overall yield was 36%. SDS-PAGE indicated a molecular weight of 45 kDa for the purified protein, and Matrix assisted laser desorption/ionization time of flight analysis of the purified lipase showed sequence similarity with GDSL family of lipases. The optimum temperature and pH for activity of the enzyme was found to be 50 ºC and 8.0, respectively. The lipase was completely inhibited by phenylmethylsulfonyl fluoride but minimal inhibition was observed when incubated with ethylenediaminetetraacetic acid and dithiothreitol. The enzyme was stable in the presence of non-polar hydrophobic solvents. Detergents like SDS inhibited enzyme activity; however, there was minimal loss of enzyme activity when incubated with hydrogen peroxide, Tween 80 and Triton X-100. The kinetic constants (Km and Vmax) revealed that the hydrolytic activity of the lipase was specific to moderate chain fatty acid esters. The Vmax, Km and Vmax/Km ratio of the enzyme were 16.98 U/mg, 0.51 mM, and 33.29, respectively when 4-nitrophenyl palmitate was used as a substrate.

Keywords:
Acinetobacter sp.; Response surface methodology; MALDI-TOF; Organic solvent tolerant lipase; Thermostable lipase

Introduction

Lipases (EC 3.1.1.3) are enzymes that cleave ester bonds in lipidic substrates. In the presence of water, they catalyze the hydrolysis of triglycerides to form monoglycerides, diglycerides, glycerol and free fatty acids. Lipases are serine hydrolases and are active at the lipid-water interface.11 Maruyama T, Nakajima M, Ichikawa S, Nabetani H, Furusaki S, Seki M. Oil-water interfacial activation of lipase for interesterification of triglyceride and fatty acid. J Am Oil Chem Soc. 2000;77:1121-1127.,22 Verma ML, Azmi W, Kanwar SS. Microbial lipases: at the interface of aqueous and non-aqueous media. A review. Acta Microbiol Immunol Hung. 2008;55:265-294. They are ubiquitous in nature and are found in a variety of plants, animals and microorganisms.33 Belfrage P, Fredrikson G, Stralfors P, Tornquist H. In: Borgstrom B, Brockman HL, eds. Lipases. Amsterdam: Elsevier Science; 1984:365–416. Most bacterial lipases are secreted extracellularly and are versatile biocatalysts that carry out a variety of reactions viz. hydrolysis, esterification, transesterification, inter esterification, acidolysis, and aminolysis.44 Akoh CC, Sellappan S, Fomuso LB, Yankah G V.V. Enzymatic synthesis of structured lipids. In: Kuo TM, Gardner HW, eds. Lipid Biotechnology. New York, USA: Marcel Dekker;2002:433–460.5.,55 Saxena RK, Sheoran A, Giri B, Davidson SW. Purification strategies for microbial lipases. J Microbiol Methods. 2003;52:1-18. Lipases utilize a wide spectrum of substrates, and some of them are stable at extreme temperature, and pH conditions and in organic solvents. They are used as catalysts for reactions in reduced water environments.66 Koops BC, Verheij HM, Slotboom AJ, Egmond MR. Effect of chemical modification on the activity of lipases in organic solvents. Enzyme Microb Technol. 1999;25:622-631. Frequently, the substrates of lipases are insoluble in aqueous solution. Hence, conducting the reactions in organic solvents can improve the dissolution of substrates and increase substrate availability, in addition to aiding in the easy separation of enzymes from substrates or products.77 Park S, Kazlauskas RJ. Biocatalysis in ionic liquids - advantages beyond green technology. Curr Opin Biotechnol. 2003;14:432-437.,88 Therisod M, Klibanov AM. Regioselective acylation of secondary hydroxyl groups in sugars catalyzed by lipases in organic solvents. J Am Chem Soc. 1987;109:3977-3981.

Lipolytic strains isolated from industrial effluents show potential utility in biodegradation and bioremediation. The biofilm formed by lipase secreting organisms can be used to degrade fats and oils.99 Reisfeld A, Rosenberg E, Gutnick D. Microbial degradation of crude oil: factors affecting the dispersion in sea water by mixed and pure cultures. Appl Microbiol. 1972;24:363-368. Therefore, we have produced, purified and biochemically characterized a lipase isolated from Acinetobacter sp. AU07. We also optimized the physical conditions by employing response surface methodology (RSM) to improve lipase production.

Materials and methods

Chemicals

Enzyme substrates (4-nitrophenyl esters) and inhibitors were procured from Sigma (St. Louis, USA). Chemicals for media preparation were purchased from Hi-Media (Mumbai, India). The ion-exchange chromatography sorbent diethylaminoethyl (DEAE) Sepharose fast flow was purchased from GE Health care. All chemicals used were of analytical grade.

Isolation and screening of lipase producing organisms

The lipase producing organisms were isolated from a distillery unit. The liquid sample (1 mL) was suspended in 9 mL sterilized water, serially diluted and spread on selective medium containing sesame oil as the sole carbon source and incubated at 37 ºC for 24 h. This selective medium contained 2.0 g/L peptone, 5.0 g/L NaCl, 20 (v/v) sesame oil (emulsified with 0.01% Triton X-100), and 15.0 g/L bacteriological agar. To screen for lipase production, individual bacterial colonies were streaked onto plates containing tributyrin 1.25 g/L (emulsified with 0.01% Triton X-100) and 15 g/L bacteriological agar. The plates were incubated at 37 ºC for 24 h, and colonies that formed a zone of clearance were lipolytic positive strains. The thirteen positive isolates were further screened for maximal secretion of extracellular lipase by assaying the lipase activity in liquid culture using 4-nitrophenyl palmitate as a substrate at 37 ºC. The Acinetobacter sp. AU07 strain, which showed the highest activity, was selected for further study. This strain was maintained in glycerol stocks (50%, v/v) and stored at −20 ºC.

Identification of the lipolytic strain

The taxonomy of the isolated strain was examined using Bergey's Manual of Determinative Biology and confirmed by 16S rDNA sequencing. A BLAST analysis of the 16S rDNA sequence identified the strain as Acinetobacter sp. AU07. The 800 bp 16S rDNA gene sequence of the Acinetobacter sp. AU07 strain has been submitted to the GenBank database, with the accession number HQ914215.

Optimization of media and culture conditions for lipase production by response surface methodology

One-factor-at-a time strategy

The production of lipase by Acinetobacter sp. AU07 was performed using different vegetable oils as inducers viz. castor oil, palm oil, coconut oil, sesame oil, and olive oil at (1%, v/v), with 1% inoculum at 30 ºC for 20 h in a rotary shaker (150 rpm). The media containing oils were emulsified with 0.25% gum acacia and were adjusted to pH 7.0. The individual effects of pH, temperature and inducers were monitored and optimized. The cell-free supernatant was recovered by centrifugation at 12,500 × g for 10 min at 4 ºC and used to determine extracellular lipase activity.

The nutrient medium containing castor oil enhanced lipase secretion and was therefore selected for further optimization of lipase production by central composite design (CCD) and response surface analysis. The variables utilized for RSM were as follows: temperature, pH, agitation, inducer concentration, and inoculum volume. All five variables were tested at three levels and designated as −1, 0, +1. The data from CCD were analysed by the least squares method. A total of 26 experiments were conducted. The response values (Y) in each trial were the average of the three replicates. The statistical software package ‘Design Expert’ software (Version 8.0, Stat-Ease Inc., Minneapolis, USA) was used to analyse the experimental designs.

Spectrophotometric assay for lipase using 4-nitrophenyl palmitate

The lipase activity was measured spectrophotometrically using 4-nitrophenyl palmitate (4-NPP) as the substrate. First, 400 µl of the enzyme was equilibrated with 50 µl of 1 M Tris-HCl buffer (final concentration 50 mM), and diluted with 530 µl sterile water. Next, 20 µl of 4-NPP (final concentration 1 mM) was added, and the reaction was incubated at 30 ºC for 10 min. The concentration of released 4-nitrophenol was measured at 410 nm. The protein content was determined by Bradford's method using the Bio-Rad assay reagent, 1010 Bradford MM. A rapid and sensitive for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976;72:248-254. with bovine serum albumin (BSA) as a standard.

Purification of lipase

The culture was grown for 16 h and centrifuged at 12,500 × g for 15 min at 4 ºC. To precipitate the proteins the culture supernatant was added with solid ammonium sulfate (60% saturation) with continuous stirring and incubated at 4 ºC for 24 h. After incubation, the sample was centrifuged at 4 ºC for 15 min at 12,500 × g, and the resulting pellet was dissolved in 10 mM Tris-HCl buffer (pH 8.0) and dialyzed with the same buffer for 12 h at 4 ºC. The dialyzed protein sample was then loaded on-to a DEAE Sepharose anion exchanger, which had been pre-equilibrated with 20 mM Tris-HCl and eluted with a buffered NaCl (0.1-1 M) concentration gradient. The lipase containing fractions were pooled and dialyzed with 10 mM Tris-HCl buffer. The resulting dialyzed protein sample was then lyophilized.

RP-HPLC analysis of purified lipase

The purity of the enzyme was analysed by RP-HPLC using an Agilent 1100 HPLC system with a C-18 column (Zorbax C-18, 4.6 mm × 250 mm i.d., 5 µm particle size; Agilent technologies). The column was eluted with 0.1% (v/v) trifluroacetic acid (TFA) in water and 0.1% (v/v) TFA in acetonitrile. The bound proteins were eluted with an increasing gradient of 2 to 100% acetonitrile for 40 min at a flow rate of 1 mL/min.

Molecular weight determination by SDS-PAGE

The lipase purified by ion exchange chromatography was subjected to SDS-PAGE (4% and10%, v/v acrylamide stacking and separating gel).1111 Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970;277:680-685. Next, the resulting gel was stained with Coomassie Brilliant Blue, and the molecular weight was determined by comparing the protein band with a standard protein marker containing mixtures of phosphorylase β (97 kDa), albumin (66 kDa), ovalbumin (45 kDa), carbonic anhydrase (30 kDa), trypsin inhibitor (20 kDa) and α-lactalbumin (14 kDa).

Mass spectrometric sequence analysis of lipase from Acinetobacter sp. AU07

MALDI-TOF MS is a sensitive technique used to analyse protein sequences by screening the masses of peptides and small proteins. By measuring the masses of peptides, it is possible to determine the sequence of the protein. The purified lipase was excised from the SDS-PAGE gel and subjected to proteolysis by trypsin, and the resulting peptides were analysed using MALDI-TOF. The mass of the residues of the purified lipase was obtained and used to search against the MASCOT database for peptide mass fingerprinting.

Biochemical characterization of purified Acinetobacter sp. AU07 lipase

Effect of temperature on lipase activity and stability

The optimum temperature for lipase activity was measured by incubating aliquots of purified enzyme with 4-nitrophenyl palmitate (4NPP) (1 mM final concentration) and 20 mM sodium-phosphate buffer at temperatures ranging from 30 to 80 ºC for 10 min, and the relative activity was determined following incubation.

The thermal stability of the lipase was measured by incubating aliquots of purified enzyme at 40 ºC, 50 ºC, 60 ºC and 70 ºC for 5 h, after which the residual activity was determined using the following equations:

(1)

where A0 is the initial activity, A is the residual activity in time t and kd is first-order deactivation rate coefficient:

(2)

From Eq. (1), the thermal deactivation profiles were determined,1212 Soares CMF, Castro HF, Santana MHA, Zanin GM. Intensification of lipase performance for long-term operation by immobilization on controlled pore silica in presence of polyethylene glycol. Appl Biochem Biotechnol. 2002;98:863-874. and the respective deactivation rate (kd) estimated. From Eq. (2), the half-life (t1/2) of the biocatalyst was estimated from the previously determined kd value.

Effect of pH on lipase activity and stability

The optimal pH was determined by assaying the purified enzyme at different hydrogen ion concentrations using the following buffers: citric acid/sodium acetate (pH 3.0-5.0), sodium phosphate (pH 6.0-7.5), Tris-HCl (pH 7.0-9.0), glycine-NaOH (pH 9.0-10.0) and phosphate-NaOH (pH 11.0).

For the pH stability studies, the purified enzyme was incubated with the respective buffers (50 mM) for 1 h at 30 ºC, and then the residual activity was determined.

Effect of organic solvents on lipase stability

The purified lipase was incubated with 30% (v/v) organic solvent at 30 ºC with constant agitation at 150 rpm for 4 h. Aliquots of the suspended enzyme were taken at different intervals, and the solvent was evaporated. The enzyme activity was then measured at 30 ºC and pH 8.0. The stability of the lipase was calculated by comparing the residual activity with the control, which was incubated without the organic solvent.

Effect of metal ions on lipase activity

Various metal salts (ZnCl2, MgSO4·7H2O, FeCl3, CaCl2·2H2O, AgNO3, MnSO4·H2O) were added to the purified lipase at concentrations of 2 mM, 5 mM, and 10 mM and incubated at 30 ºC for 30 min. The relative activity of the enzyme was measured as the change in the activity of the enzyme in the presence of metal salts when compared to the enzyme activity without metal salts.

Effect of inhibitors, detergents, and oxidizing agent on lipase stability

The stability of the purified lipase in the presence of inhibitors, detergents and oxidizing agent was evaluated by incubating the purified lipase with the inhibitors-DTT, EDTA and PMSF at a final concentrations of 2 mM, 5 mM and 10 mM; the detergents-Tween 80, Triton X-100, SDS at a final concentration of 0.25%, 0.5% and 1%; and an oxidizing agent-H2O2 at a final concentration of 0.5%, 1%, 1.5% and 2%. The incubated enzyme (without inhibitors, detergents and oxidizing agent) was used as a reference to calculate the relative activity.

Determination of lipase kinetics using different substrates

The hydrolytic activity of Acinetobacter sp. AU07 lipase was investigated using different substrates, such as 4-nitrophenyl butyrate (4-NPB), 4-nitrophenyl laurate (4-NPL), 4-nitrophenyl myristate (4-NPM) and 4-nitrophenyl palmitate (4-NPP), at various substrate concentrations (0.2-2 mM). The Michaelis-Menten enzyme kinetic constants Km and Vmax were determined from the Lineweaver-Burk and Woolf-Hanes plots.

Results and discussion

Isolation and identification of bacteria producing extracellular lipase

The bacterial strains that were isolated from distillery waste were screened for lipase secretion by selection on tributyrin agar plates. The AU07 strain that showed a larger zone of clearance around the colony was selected for further studies. The morphological and biochemical characterization revealed that the AU07 strain is aerobic, gram negative and non-motile. The strain was confirmed as Acinetobacter sp. AU07 by 16S rDNA sequencing which is in accordance with Bergey's Manual of Determinative Biology.

Optimization of culture conditions for lipase production by response surface methodology

A maximal lipase activity of 331.16 U (specific activity of 38.64 U/mg) was obtained by culturing the bacterium at 30 ºC and pH 7.0 for 16 h. The lipase production reached a maximum during the stationary phase and then gradually decreased. The fermentation time to obtain maximum lipase activity is similar to that of lipase production by Acinetobacter sp. BK44 where maximal lipase activity occurs after 12 h of incubation.1313 Anbu P, Noh MJ, Kim DH, Seo JS, Hur BK, Min KH. Screening and optimization of extracellular lipases by Acinetobacter species isolated from oil-contaminated soil in South Korea. Afr J Biotechnol. 2011;10:4147-4156.

Though the lipase production from this strain is constitutive, the incorporation of oils in the medium increased the enzyme production.1414 Gupta R, Gupta N, Rathi P. Bacterial lipases: an overview of production, purification and biochemical properties. Appl Microbiol Biotechnol. 2004;64:763-781.

15 Barbaro SE, Trevors JT, Inniss WE. Effects of low temperature, cold shock, and various carbon sources on esterase and lipase activities and exopolysaccharide production by a psychrotrophic Acinetobacter sp. Can J Microbiol. 2001;47:194-205.
-1616 Pratuangdeikul J, Dharmsthiti S. Purification and characterization of lipase from psychrophilic Acinetobacter calcoaceticus LP009. Microbiol Res. 2000;155:95-100. Earlier reports demonstrated lipase production in a medium containing lipidic substrates as the sole carbon source with an organic nitrogen source,1414 Gupta R, Gupta N, Rathi P. Bacterial lipases: an overview of production, purification and biochemical properties. Appl Microbiol Biotechnol. 2004;64:763-781. but sometimes, lipase production was repressed by long chain fatty acid esters.1515 Barbaro SE, Trevors JT, Inniss WE. Effects of low temperature, cold shock, and various carbon sources on esterase and lipase activities and exopolysaccharide production by a psychrotrophic Acinetobacter sp. Can J Microbiol. 2001;47:194-205. Castor oil and sesame oil induced lipase production when compared with other lipid/oil sources (Supplemental Fig. S1). Castor oil is the source of ricinoleic acid which induces lipase production.1717 Gomes N, Braga A, Teixeira JA, Belo I. Impact of Lipase-mediated hydrolysis of castor oil on γ-Decalactone production by Yarrowia lipolytica. J Am Oil Chem Soc. 2013;90:1131-1137. The optimization of culture conditions one factor at a time is time consuming; therefore, response surface methodology, which is a statistical method, was used to determine the optimal conditions for lipase production.1818 Hasan-Beikdashti M, Forootanfar H, Safiarian MS, et al. Optimization of culture conditions for production of lipase by a newly isolated bacterium Stenotrophomonas maltophilia. J Taiwan Inst Chem Eng. 2012;43:670-677.,1919 Priji P, Unni KN, Sajith S, Binod P, Benjamin S. Production, optimization, and partial purification of lipase from Pseudomonas sp. strain BUP6, a novel rumen bacterium characterized from Malabari goat. Biotechnol Appl Biochem. 2014, http://dx.doi.org/10.1002/bab.1237.
http://dx.doi.org/10.1002/bab.1237...
The analysis of variance for the response surface quadratic model for lipase production is shown in Table 1. The 2D contour plots and 3D response surface are graphical representations of the regression equation. They were plotted based on the model regression equation to evaluate the interactions among the tested variables and determine the optimum level of each factor to maximize lipase production (Fig. 1).

Table 1
Experimental designs used in RSM studies with two independent variables showing the observed and the predicted values of lipase production.
Fig. 1
Response surface plots of the impact of various factors on optimal production of the AU07 lipase. Each figure depicts the impact of specific factors on lipase production. The variables investigated were temperature, pH, agitation, inducer concentration, and inoculum volume. (A) Temperature and pH, (B) temperature and agitation, (C) temperature and inducer, (D) temperature and inoculum volume, (E) pH and agitation, (F) pH and inducer, (G) pH and inoculum volume, (H) agitation and inducer, (I) agitation and inoculum volume, and (J) inducer and inoculum volume.

The contours were plotted considering one variable constant at its central level, while the other was varied within their experimental ranges. The data from the 2D contour plots of lipase production by Acinetobacter sp. AU07 (Supplemental Fig. S2) suggest a significant increase in lipase production resulting from all the factors investigated: 0.5% (v/v) inoculum size, 30 ºC fermentation temperature, pH 7, 2% (v/v) inducer concentration and agitation at 150 rpm. The optimal temperature for lipase production observed in this study is similar to those of Acinetobacter radioresistens2020 Chen SJ, Cheng CY, Chen TL. Production of an alkaline lipase by Acinetobacter radioresistens. J Ferment Bioeng. 1998;86:308-312. and Acinetobacter calcoaceticus LP009.2121 Dharmsthiti S, Pratuangdejkul J, Theeragool GT, Luchai S. Lipase activity and gene cloning of Acinetobacter calcoaceticus LP009. J Gen Appl Microbiol. 1998;44:139-145. Our standardized conditions gave an optimum lipase production of 14.5 U/mL (Fig. 2A).

Fig. 2
Growth curve and lipase production from Acinetobacter sp. AU07 in shake flask and bioreactor. (A) Growth curve and lipase production from Acinetobacter sp. AU07 in a shake flask (30 ºC, pH 7.0, 0.5%, v/v inoculum size, 2%, v/v inducer concentration, 150 rpm). The lipase activity was measured using 1 mM 4-NP as the substrate. The reaction was incubated at 30 ºC for 10 min, and the absorbance was measured at 410 nm. The OD was converted to lipase activity (U/mL) and the graph was plotted. Each data point is the mean of three replicates. (B) Growth curve and production of lipase from Acinetobacter sp. AU07 in a bioreactor (3 L) (30 ºC, pH 7.0, 0.5%, v/v inoculum size, 2%, v/v inducer concentration, 150 rpm, 1.5 vvm aeration). The lipase activity was measured using 4-NP (1 mM) as the substrate. The reaction was incubated at 30 ºC for 10 min and OD was measured at 410 nm. The OD was converted to lipase activity (U/mL) and the graph was plotted. Each data point is the mean of three replicates.

The model predicted a maximum lipase production of 16.08 U/mL at 34 ºC, and pH 7.8, with castor oil as the inducer (2.3%, v/v), at an inoculum volume (0.44%, v/v), and with agitation at 199 rpm. To validate the predicted response, the lipase production was tested experimentally under optimal culture conditions, and the maximum lipase activity was 15.84 U/mL. The lipase production from this strain cultured under optimized conditions is similar to that of A. calcoaceticus.2222 Bo Z. The lipase production optimization of Acinetobacter calcoaceticus 23 using response surface methodology. Guangxi Sci. 2008;4:38. The significance of the response surface quadratic model was analysed by ANOVA (Table 2), and used to generate a quadratic equation for lipase activity (Y). The adjusted R2 (adj. R2 = 0.9816) is high and confirmed the model is significant. Additionally, the statistical coefficients confirmed that the model is significant and can be applied to increase lipase production. The production of lipase increased to 48 U/mL when cultivated in a 3 L bioreactor under controlled conditions (Fig. 2B).

Table 2
Results of the ANOVA for the response surface quadratic model for lipase production.

The equation above gives the relationship between lipase activity and the tested variables, where A is the temperature, B is pH, C is agitation, D is inducer concentration, and E is inoculum volume.

Purification of lipase

The Acinetobacter sp. AU07 lipase (ASL) was partially purified by ammonium sulfate precipitation (30-60% saturation) and further purified to homogeneity by anion exchange chromatography. The lipase was successfully purified from cell-free crude supernatant with an overall yield of 36.04%, with a 2.2 fold purification and a specific activity of 83.47 U/mg. The purification results are summarized in Table 3. The Acinetobacter sp. AU07 lipase was eluted in an increasing gradient of NaCl (0.1-1 M). The maximal lipase activity was obtained in the fraction eluted with 600 mM of NaCl, indicating the strong binding of the protein to the ion-exchange resin. The purity of the enzyme was analysed by RP-HPLC. The lipase was eluted as a single peak with a retention time of 20.537 min as shown in the Supplemental Fig. S3.

Table 3
Purification table of Acinetobacter sp. AU07 lipase.

SDS-PAGE of ion-exchange purified lipase

The purified enzyme resolved into a single band on an SDS-PAGE gel (Fig. 3) had an estimated molecular weight of 45 kDa, which is the same as the A. radioresistens CMC-1 lipase.2323 Hong MC, Chang MC. Purification and characterization of an alkaline lipase from a newly isolated Acinetobacter radioresistens CMC-1. Biotechnol Lett. 1998;20:1027-1029.

Fig. 3
SDS-PAGE (10%) of the purified lipase from Acinetobacter sp. AU07. Lane A: Molecular mass marker proteins: phosphorylase β (97 kDa), albumin (66 kDa), ovalbumin (45 kDa), carbonic anhydrase (30 kDa), trypsin inhibitor (20 kDa) and α-lactalbumin (14 kDa). Lane B: Purified lipase (10 µg) after ion-exchange chromatography showing single band.

Mass spectrometric sequence analysis of the lipase from Acinetobacter sp. AU07

The lipase in this study has 55% homology to the lipase from A. calcoaceticus PHEA-2 followed by the lipases from Acinetobacter pitti and Acinetobacter baumanii. The partial amino acid sequence is shown in Fig. 4. The molecular mass and the isoelectric point (pI) were predicted to be 41.196 kDa and 7.14, respectively. The peptide masses and the matching amino acid sequences of peptides are listed in the Supplemental Fig. S4.

Fig. 4
Partial amino acid sequence of the isolated lipase showing homology with Acinetobacter calcoaceticus (55% identity).

The activity of a variety of lipases primarily depends on the catalytic triad typically formed by Ser, His, and Asp residues. This triad was present in the isolated Acinetobacter sp. lipase sequence (Supplemental Fig. S5). Partial amino acid sequencing confirmed that the enzyme isolated in this study possesses the characteristics of the lipase enzyme family.

Biochemical characterization of purified Acinetobacter sp. AU07 lipase

Effect of temperature on activity and stability of lipase

The optimum temperature for lipase activity was 50 ºC (Fig. 5A), whereas approximately 75% and 25% activity were observed at 60 ºC and 70 ºC, respectively. The optimum temperature for lipase activity was similar to that of lipase from A. calcoaceticus LP009.2121 Dharmsthiti S, Pratuangdejkul J, Theeragool GT, Luchai S. Lipase activity and gene cloning of Acinetobacter calcoaceticus LP009. J Gen Appl Microbiol. 1998;44:139-145. The stability of the lipase at different temperatures was determined by incubating the enzyme at different temperatures for 5 h and assaying the enzyme at 50 ºC. After 5 h, the enzyme retained 78% activity at 40 ºC and 72% activity at 50 ºC (Fig. 5B), which demonstrates that the enzyme is thermo stable. A linear increase in the deactivation constants (kd) was observed when the temperature was increased from 40 ºC to 60 ºC. The half-life of the enzyme was 1 h 38 min at 40 ºC, 1 h 9 min at 50 ºC and 1 h and 7 min at 60 ºC. The corresponding thermal deactivation constants (kd) and half-life (t1/2) of the purified lipase are shown in Table 4.

Fig. 5
(A) Effect of temperature on the activity of Acinetobacter sp. AU07. The reaction mixture was incubated at different temperatures (30-80 ºC), and the enzyme activity was assayed under standard assay conditions. (B) Effect of temperature on the stability of the Acinetobacter sp. AU07 lipase. To determine the thermal stability, the enzyme was pre-incubated at various temperatures (40-70 ºC) for 5 h, and the enzyme activity was assayed under standard assay conditions. (C) Effect of pH on the activity and stability of the Acinetobacter sp. AU07 lipase. For the enzyme activity assays, the reaction was assayed at various pH levels under standard assay conditions. For the enzyme stability assays, the enzyme was pre-incubated with various pH buffers (50 mM) of pH (5-11) at 30 ºC for 1 h, and then the residual activity was determined by assaying under standard assay conditions.
Table 4
Half-life and thermal deactivation constants at different temperatures.

Effect of pH on activity and stability of lipase

Most of the lipases from Acinetobacter sp. are alkali stable, 2424 In-Hye P, Kim SH, Lee YS, et al. Purification, and characterization of a cold-adapted lipase produced by Acinetobacter baumannii BD5. J Microbiol Biotechnol. 2009;19:128-135.,2525 Saisubramanian N, Sivasubramanian S, Nandakumar N, Indirakumar B, Chaudhary N, Puvanakrishnan R. Two step purification of Acinetobacter sp. lipase and its evaluation as a detergent additive at low temperatures. Appl Biochem and Biotechnol. 2008;150:139-156. losing their activity at low pH. This could be due to the loss of the coordinating metal ion Ca2+ metal ion from the active site at low pH.2626 Snellman EA, Colwell RR. Acinetobacter lipases: molecular biology, biochemical properties and biotechnological potential. J Ind Microbiol Biotechnol. 2004;31:391-400. The purified lipase in this study showed the highest activity at pH 8.0 which is similar to the Acinetobacter sp. CR9 lipase 2727 Kasana RC, Kaur B, Yadav SK. Isolation and identification of a psychrotrophic Acinetobacter sp. CR9 and characterization of its alkaline lipase. J Basic Microbiol. 2008;48:207-212. and the Acinetobacter baylyi lipase.2828 Uttatree S, Winayanuwattikun P, Charoenpanich J. Isolation and characterization of a novel thermophilic-organic solvent stable lipase from Acinetobacter baylyi. Appl Biochem Biotechnol. 2010;162:1362-1376. The A. radioresistens CMC-1 lipase had a pH optima at 10.5,2323 Hong MC, Chang MC. Purification and characterization of an alkaline lipase from a newly isolated Acinetobacter radioresistens CMC-1. Biotechnol Lett. 1998;20:1027-1029. whereas, A. calacoaceticus 1-7 had a pH optima of 9.2929 Wang HK, Ma HJ, Zhong SJ, Wei YJ, Qi W. The purification of alkaline and thermostable lipase from a newly isolated strain Acinetobacter calcoaceticus 1-7. In: Bioinformatics and Biomedical Engineering (iCBBE), 4th International Conference. 2010:1–3. In contrast, the lipases from A. calcoaceticus LP009 and Acinetobacter sp.1313 Anbu P, Noh MJ, Kim DH, Seo JS, Hur BK, Min KH. Screening and optimization of extracellular lipases by Acinetobacter species isolated from oil-contaminated soil in South Korea. Afr J Biotechnol. 2011;10:4147-4156.,2121 Dharmsthiti S, Pratuangdejkul J, Theeragool GT, Luchai S. Lipase activity and gene cloning of Acinetobacter calcoaceticus LP009. J Gen Appl Microbiol. 1998;44:139-145. had pH optima of 7 and 6 respectively. ASL presented a relative activity of 65% at pH 9, 26% at pH 10, and only 11% at pH 11. The activity was not reduced significantly after incubation for 1 h at 30 ºC (Fig. 5C).

Effect of organic solvents on lipase stability

The stripping of water from an enzyme primarily occurs in the presence of polar solvents and to a lesser degree in the presence of hydrophobic solvents determined by log p values. For instance, methanol desorbed approximately 60% of the water bound to the enzyme, while hexane only desorbed 0.5%.3030 Klibanov AM. Improving enzymes by using them in organic solvents. Nature. 2001;409:241-246. Solvents with high log p values cause less inactivation of enzyme than solvents with low log p values.3131 Laane C, Boeren S, Vos K, Veeger C. Rules for optimization of biocatalysis in organic solvents. Biotechnol Bioeng. 1987;30:81-87. Many researchers have previously reported the solvent stable nature of lipases,2424 In-Hye P, Kim SH, Lee YS, et al. Purification, and characterization of a cold-adapted lipase produced by Acinetobacter baumannii BD5. J Microbiol Biotechnol. 2009;19:128-135.,3232 Anbu P, Hur BK. Isolation of an organic solvent-tolerant bacterium Bacillus licheniformis PAL05 that is able to secrete solvent-stable lipase. Biotechnol Appl Biochem. 2014;61:528-534.

33 Sivaramakrishnan R, Muthukumar K. Isolation of thermo-stable and solvent-tolerant Bacillus sp. lipase for the production of biodiesel. Appl Biochem Biotechnol. 2012;166:1095-1111.
-3434 Kumar R, Sharma A, Kumar A, Singh D. Lipase from Bacillus pumilus RK31: production, purification and some properties. World Appl Sci J. 2012;16:940-948. thus the stability of Acinetobacter sp. AU07 lipase in different solvents was studied (Table 5). The polar solvents (low log p) reduced the enzyme activity, whereas the non-polar solvents (higher log p) increased the enzyme activity. Among the polar solvents, DMSO increased the activity 1.9 fold. Toluene a non-polar solvent, increased the activity 3.5-fold when incubated for 2 h and 2.8-fold when incubated for 4 h. When incubated for 4 h each at 30 ºC, other non-polar solvents also increased the activity considerably, viz., n-hexane 1-fold, dichloromethane 0.4-fold, and n-heptane 0.7-fold.

Table 5
Effect of organic solvents on the Acinetobacter sp. AU07 lipase.

Effect of metal ions on lipase activity

Metal ions decreased the activity of the enzyme. The lipase retained only 3% of its initial activity with a 10 mM Zn2+ concentration (Table 6). Several authors observed similar results using Zn2+, 2323 Hong MC, Chang MC. Purification and characterization of an alkaline lipase from a newly isolated Acinetobacter radioresistens CMC-1. Biotechnol Lett. 1998;20:1027-1029.,3535 Mohammed HJ. Physicochemical factors affected the partial purified lipase activity of Acinetobacter baumannii local isolates. Iraqi J Pharm Sci. 2013;22:82-89.

36 Choo DW, Kurihara T, Suzuki T, Soda K, Esaki N. A cold-adapted lipase of an Alaskan psychrotroph, Pseudomonas sp. strain B11-1: gene cloning and enzyme purification and characterization. Appl Environ Microbiol. 1998;64:486-491.

37 Emmanuel L, Schanck K, Colson C. Purification and preliminary characterization of the extracellular lipase of Bacillus subtilis 168, an extremely basic pH-tolerant enzyme. Eur J Biochem. 1993;216:155-160.

38 Snellman EA, Sullivan ER, Colwell RR. Purification and properties of the extracellular lipase, LipA, of Acinetobacter sp. RAG-1. Eur J Biochem. 2002;269:5771-5779.
-3939 Sztajer H, Lunsdorf H, Erdmann H, Menge U, Schmid R. Purification and properties of lipase from Penicillium simplicissimum. Biochim Biophys Acta. 1992;1124:253-261. although the inhibitory effect is not yet known. The decrease in the activity of the enzyme in the presence of metals ions implies that the AU07 lipase does not require metal ions for its activity.

Table 6
Effect of metal ions on the activity of the Acinetobacter sp. AU07 lipase.

Effect of inhibitors, detergents, and oxidizing agents on lipase activity

Phenyl methylsulphonyl fluoride (PMSF: an inhibitor of serine lipase) inhibited the lipase activity (88% inhibition at 2 mM concentration). Similar results were observed in the lipases from A. radioresistens CMC-12323 Hong MC, Chang MC. Purification and characterization of an alkaline lipase from a newly isolated Acinetobacter radioresistens CMC-1. Biotechnol Lett. 1998;20:1027-1029. and Bacillus stearothermophilus P14040 Sinchaikul S, Sookkheo B, Phutrakul S, Pan FM, Chen ST. Optimization of a thermostable lipase from Bacillus stearothermophilus P1: overexpression, purification, and characterization. Protein Expr Purif. 2001;22:388-398. suggesting the involvement of a serine residue in the active site. There was minimal inhibition by EDTA and DTT (Fig. 6). The decrease in the enzyme activity in the presence of metal ions and the absence of inhibition of the enzyme activity by EDTA indicate that metal ions are not required for the lipase activity. These results suggest that this lipase may be a member of serine-enzyme family. The effect of detergents such as SDS, Tween 80 and Triton X-100 on the enzyme activity were studied. SDS inhibited the enzyme activity; however, there was minimal loss in enzyme activity when incubated with 0.25 mM Tween 80 or Triton X-100 (Table 7). Oxidizing agents (hydrogen peroxide) had minimal effect on the enzyme activity, and the enzyme retained 94% (at 0.5 mM) and 73% (at 2 mM) of its enzyme activity, respectively.

Fig. 6
Effect of inhibitors on Acinetobacter sp. AU07 lipase activity. The enzyme was incubated with different inhibitors at 30 ºC for 1 h, and the enzyme activity was assayed under standard assay procedure conditions. The enzyme incubated without inhibitors was used as a reference to calculate the relative activity. Each value presented here is an average of three replicates.
Table 7
Effect of detergents and oxidizing agent on the activity of the Acinetobacter sp. AU07 lipase.

Determination of lipase kinetics using different substrates

The kinetic parameters (Km and Vmax) of hydrolysis of different fatty acid esters were determined. The Km was higher for 4-nitrophenyl butyrate (short fatty acid esters), and low Km values were obtained for 4-nitrophenyl laurate, 4-nitrophenyl myristate and 4-nitrophenyl palmitate (moderate chain length fatty acid esters) indicating that the Acinetobacter sp. AU07 lipase is more specific to soluble fatty acid esters of moderate chain lengths. These results are consistent with Acinetobacter baumannii BD5 lipase.4141 Park IH, Kim SH, Lee YS, et al. Purification, and characterization of a cold-adapted lipase produced by Acinetobacter baumannii BD5. J Microbiol Biotechnol. 2009;19:128-135. A low Km value indicates the enzyme has a high affinity for a substrate, whereas a high Km value indicates a low affinity. The comparison of kinetic constants (Km and Vmax) obtained for various substrates (4-nitrophenyl esters) suggest that the hydrolytic activity of this lipase was specific to moderate chain fatty acid esters. This lipase was found to have a lower Km value for 4-Nitrophenyl laurate when compared with the other substrates. This suggests that the lipase has a higher affinity towards 4-nitrophenyl laurate.

The Vmax values for 4-NPL, 4-NPM and 4-NPP were high and were similar in range (Table 8). The Vmax/Km ratio was different for all substrates used, but for moderate and long chain fatty acid esters, it exceeded the ratio for p-NPB. The Km and Vmax values determined by the Lineweaver-Burk and Woolf-Hanes plots for the different substrates are shown in Supplemental Fig. S6.

Table 8
Km and V max values of the enzyme determined by Lineweaver–Burk and Woolf–Hanes plots for different substrates.

Conclusion

A thermostable organic solvent tolerant lipase from Acinetobacter sp. AU07 has been purified and characterized biochemically. The production was improved by optimizing the culturing conditions using response surface methodology. The purified enzyme showed several important properties such as activity in alkaline pH, resistance to surfactants and oxidizing agents that would prove useful in industrial applications and in the detergent and pharmaceutical industries. The biofilms of the lipase secreting Acinetobacter sp. AU07 may be used for bioremediation to treat waste water contaminated with oils. The thermostable and organic solvent tolerant nature of the lipase can be used to perform synthetic reactions in the presence of organic solvents and at high temperatures.

Acknowledgements

Special thanks to the Department of Biotechnology, Government of India, for funding Senior Research fellowship (to P. Gururaj) and programme support (BT/01/COE/07/01) to Gautam Pennathur, S. Ramalingam, and G. Nandhinidevi.

Appendix A Supplementary data

Supplementary data associated with this article can be found, in the online version, at doi:10.1016/j.bjm.2015.04.002.

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    Emmanuel L, Schanck K, Colson C. Purification and preliminary characterization of the extracellular lipase of Bacillus subtilis 168, an extremely basic pH-tolerant enzyme. Eur J Biochem 1993;216:155-160.
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    Snellman EA, Sullivan ER, Colwell RR. Purification and properties of the extracellular lipase, LipA, of Acinetobacter sp. RAG-1. Eur J Biochem 2002;269:5771-5779.
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    Sinchaikul S, Sookkheo B, Phutrakul S, Pan FM, Chen ST. Optimization of a thermostable lipase from Bacillus stearothermophilus P1: overexpression, purification, and characterization. Protein Expr Purif 2001;22:388-398.
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Publication Dates

  • Publication in this collection
    Jul-Sep 2016

History

  • Received
    25 Oct 2014
  • Accepted
    16 Apr 2015
Sociedade Brasileira de Microbiologia USP - ICB III - Dep. de Microbiologia, Sociedade Brasileira de Microbiologia, Av. Prof. Lineu Prestes, 2415, Cidade Universitária, 05508-900 São Paulo, SP - Brasil, Ramal USP 7979, Tel. / Fax: (55 11) 3813-9647 ou 3037-7095 - São Paulo - SP - Brazil
E-mail: bjm@sbmicrobiologia.org.br