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Phylogenetic diversity and structure in moist and dry upland forests in the semi-arid region of Brazil

Diversidade e estrutura filogenética em florestas úmidas e secas de terras altas na região semiárida do Brasil

Abstract

Understanding the factors influencing variation in the diversity and structure of rich biological communities (e.g., Neotropical upland forests) is essential in the context of climate change. In this study, we examine how environmental filters (temperature, precipitation, and elevation) and distinct habitats (moist upland forests - MUF and dry upland forests - DHF) influence the phylogenetic diversity and structure of 54 tree communities (28 MHF and 26 DHF). We used the standardized effect size (ses) of the metrics phylogenetic diversity (ses.PD), mean pairwise distance (ses.MPD), and mean nearest neighbor distance (ses.MNTD) to quantify changes in tree community diversity and structure. Then, we assessed the relationships of the phylogenetic metrics with the environmental filters as predictors using generalized linear models (GLMs). Our results indicate that increasing temperature negatively affects the phylogenetic indices analyzed, leading to less diverse and more clustered communities. In contrast, increasing precipitation and elevation showed a significant positive relationship with the analyzed indices, directing communities towards greater phylogenetic diversity and random or overdispersed structure. Our findings also reveal that phylogenetic diversity and structure vary with habitat type. For example, while MUFs exhibit higher phylogenetic diversity and random structure, DUFs display lower phylogenetic diversity and clustered structure. In conclusion, our results suggest that the phylogenetic patterns exhibited by upland communities in the semiarid region are strongly related to climatic conditions and the habitat in which they are found. Therefore, if the predicted temperature increases and precipitation decreases in climate change scenarios for the semi-arid region materialize, these communities may face significant biodiversity loss.

Keywords:
phylogeny; environmental filter; Brejo de Altitude; Caatinga; Atlantic Forest

Resumo

Compreender os fatores que influenciam a variação na diversidade e estrutura de comunidades biológicas diversas (por exemplo, florestas de terras altas neotropicais) é essencial no contexto das mudanças climáticas. Por esse motivo, examinamos como os filtros ambientais (temperatura, precipitação e altitude) e habitats distintos (florestas úmidas de altitude - MUF e florestas secas de altitude - DUF) influenciam a diversidade e estrutura filogenética de 54 comunidades de árvores (28 MUF e 26 DUF). Utilizamos o tamanho do efeito padronizado (ses) das métricas diversidade filogenética (ses.PD), distância média entre pares (ses.MPD) e distância média até o vizinho mais próximo (ses.MNTD) para quantificar as mudanças na diversidade e estrutura das comunidades de árvores. Em seguida, avaliamos as relações das métricas filogenéticas com os filtros ambientais como preditores usando modelos lineares generalizados (GLMs). Nossos resultados indicam que o aumento da temperatura possui relação negativa com os índices filogenéticos analisados, direcionando comunidades filogeneticamente menos diversas e mais agrupadas. Já o aumento da precipitação e elevação apresentaram significativa relação positiva com os índices analisados, direcionando comunidades filogeneticamente mais diversas e com estrutura aleatória ou sobredispersas. Nossos achados também mostram que a diversidade e estrutura filogenética variam com o tipo de habitat. Enquanto MUFs apresentam maior diversidade filogenética e estrutura aleatória, DUFs exibem menor diversidade filogenética e estrutura agrupada. Em conclusão, nossos resultados indicam que os padrões filogenéticos apresentados pelas comunidades de terras altas do semiárido possuem forte relação com as condições climáticas e o habitat no qual estão inseridos. Assim, caso o aumento de temperaturas e a redução da precipitação previstos nos cenários de mudanças climáticas para a região semiárida se concretizarem, essas comunidades podem enfrentar uma significativa perda de biodiversidade.

Palavras-chave:
filogenia; filtro ambiental; Brejo de Altitude; Caatinga; Floresta Atlântica

1. Introduction

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). Recent studies also indicate that these abiotic filters have a strong relationship with phylogenetic diversity and structure patterns observed in Neotropical upland ecosystems (Mattos et al., 2019MATTOS, J.S., MORELLATO, L.P.C., CAMARGO, M.G.G. and BATALHA, M.A., 2019. Plant phylogenetic diversity of tropical mountaintop rocky grasslands: local and regional constraints. Plant Ecology, vol. 220, no. 12, pp. 1119-1129. http://dx.doi.org/10.1007/s11258-019-00982-5.
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Phylogenetic diversity refers to the sum of the evolutionary ages of species in a community (Faith, 1992FAITH, D.P., 1992. Conservation evaluation and phylogenetic diversity. Biological Conservation, vol. 61, no. 1, pp. 1-10. http://dx.doi.org/10.1016/0006-3207(92)91201-3.
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). Simultaneously, the phylogenetic structure is related to the organization of these species (i.e., clustering, overdispersion, and randomness) based on their evolutionary relationships (Webb, 2000WEBB, C.O., 2000. Exploring phylogenetic structure of Ecological Communities: an example for Rain Forest Trees. American Naturalist, vol. 156, no. 2, pp. 145-155. http://dx.doi.org/10.1086/303378. PMid:10856198.
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). In communities with clustered structures, species tend to be phylogenetically closer than expected by chance (Webb, 2000WEBB, C.O., 2000. Exploring phylogenetic structure of Ecological Communities: an example for Rain Forest Trees. American Naturalist, vol. 156, no. 2, pp. 145-155. http://dx.doi.org/10.1086/303378. PMid:10856198.
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). Clustering is commonly determined by environmental filtering, which selects species with conserved functional adaptations suited to local conditions (Wiens and Graham 2005WIENS, J.J. and GRAHAM, C.H., 2005. Niche Conservatism: Integrating Evolution, Ecology, and Conservation Biology. Annual Review of Ecology, Evolution, and Systematics, vol. 36, no. 1, pp. 519-539. http://dx.doi.org/10.1146/annurev.ecolsys.36.102803.095431.
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). For example, high temperatures and low precipitation in upland dry forests filter drought-tolerant lineages, promoting phylogenetic clustering (Cisneros et al., 2021CISNEROS, C.M.G., HERINGER, G., DOMEN, S.M., SÁNCHEZ, L.R. and MEIRA-NETO, J.A.A., 2021. The environmental filtering and the conservation of tropical dry forests in mountains in a global change scenario. Biodiversity and Conservation, vol. 30, no. 10, pp. 2689-2705. http://dx.doi.org/10.1007/s10531-021-02215-6.
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On the other hand, when biotic interactions (e.g., competition) are more powerful drivers of community assembly than environmental filtering, phylogenetically less related species coexist (i.e., overdispersion), thus enriching the phylogenetic diversity of biological communities (Weiher and Keddy, 1995WEIHER, E. and KEDDY, P.A., 1995. Assembly rules, null models, and trait dispersion: new questions from old patterns. Oikos, vol. 74, no. 1, pp. 159. http://dx.doi.org/10.2307/3545686.
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). Further, phylogenetic overdispersion can also be an outcome of the effects of environmental filtering on species with convergent trait evolution (Cavender-Bares et al., 2009CAVENDER-BARES, J., KOZAK, K.H., FINE, P.V.A. and KEMBEL, S.W., 2009. The merging of community ecology and phylogenetic biology. Ecology Letters, vol. 12, no. 7, pp. 693-715. http://dx.doi.org/10.1111/j.1461-0248.2009.01314.x. PMid:19473217.
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In the biodiversity context, it is evident that there is a strong relationship between climatic variables (e.g., temperature and precipitation) and phylogenetic diversity and structure (Qian et al., 2017aQIAN, H., CHEN, S. and ZHANG, J., 2017a. Disentangling environmental and spatial effects on phylogenetic structure of angiosperm tree communities in China. Scientific Reports, vol. 7, no. 1, pp. 5634. http://dx.doi.org/10.1038/s41598-017-04679-5. PMid:28717122.
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). Owing to this relationship, global climate change is altering the phylogenetic patterns of plant communities exposed to adverse conditions (Li et al., 2019LI, D., MILLER, J.E.D. and HARRISON, S., 2019. Climate drives loss of phylogenetic diversity in a grassland community. Proceedings of the National Academy of Sciences of the United States of America, vol. 116, no. 40, pp. 19989-19994. http://dx.doi.org/10.1073/pnas.1912247116. PMid:31527249.
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). The effects of climate on phylogenetic diversity might be more pronounced in tropical upland ecosystems, as they are among the most threatened by such global changes (Mata-Guel et al., 2023MATA-GUEL, E.O., SOH, M.C.K., BUTLER, C.W., MORRIS, R.J., RAZGOUR, O. and PEH, K.S.H., 2023. Impacts of anthropogenic climate change on tropical montane forests: an appraisal of the evidence. Biological Reviews of the Cambridge Philosophical Society, vol. 98, no. 4, pp. 1200-1224. http://dx.doi.org/10.1111/brv.12950. PMid:36990691.
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). Therefore, a better understanding of the effects of climatic variables on the current phylogenetic patterns can provide insights into how these communities will respond to future climate changes.

Despite the growing number of studies describing the relationships between climatic variables and phylogenetic diversity and structure in upland ecosystems, we identified a significant gap related to the Neotropics. Currently, there are no large-scale studies investigating how the environmental heterogeneity of the Brazilian semi-arid region relates to the phylogenetic patterns of the upland forests in this area. This region is of great interest for conservation, as it is one of South America's most vulnerable locations to climate change (Marengo and Bernasconi, 2015MARENGO, J.A. and BERNASCONI, M., 2015. Regional differences in aridity/drought conditions over Northeast Brazil: present state and future projections. Climatic Change, vol. 129, no. 1-2, pp. 103-115. http://dx.doi.org/10.1007/s10584-014-1310-1.
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). To address this gap, the present study investigates two co-occurring upland ecosystems in the semi-arid region: the Serras de Caatinga (dry upland forests - DUF) and the Brejos de Altitude (moist upland forests - MUF). The DUFs harbor communities within the phytogeographic domain of the Caatingas (Silva et al., 2014SILVA, F.K.G., FARIA LOPES, S., LOPEZ, L.C.S., DE MELO, J.I.M. and TROVÃO, D.M.B.M., 2014. Patterns of species richness and conservation in the Caatinga along elevational gradients in a semiarid ecosystem. Journal of Arid Environments, vol. 110, no. 1, pp. 47-52. http://dx.doi.org/10.1016/j.jaridenv.2014.05.011.
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; Moro et al., 2016MORO, M.F., NIC LUGHADHA, E., ARAÚJO, F.S. and MARTINS, F.R., 2016. A phytogeographical metaanalysis of the semiarid Caatinga domain in Brazil. Botanical Review, vol. 82, no. 2, pp. 91-148. http://dx.doi.org/10.1007/s12229-016-9164-z.
http://dx.doi.org/10.1007/s12229-016-916...
; Lopes et al., 2017LOPES, S.F., RAMOS, M.B. and ALMEIDA, G.R., 2017. The role of mountains as refugia for biodiversity in Brazilian Caatinga: conservationist implications. Tropical Conservation Science, vol. 10, pp. 1-12. http://dx.doi.org/10.1177/1940082917702651.
http://dx.doi.org/10.1177/19400829177026...
; Ramos et al., 2020RAMOS, M.B., DINIZ, F.C., ALMEIDA, H.A., ALMEIDA, G.R., PINTO, A.S., MEAVE, J.A. and LOPES, S.D.F., 2020. The role of edaphic factors on plant species richness and diversity along altitudinal gradients in the Brazilian semi-arid region. Journal of Tropical Ecology, vol. 36, no. 5, pp. 199-212. http://dx.doi.org/10.1017/S0266467420000115.
http://dx.doi.org/10.1017/S0266467420000...
; Diniz et al., 2021DINIZ, F.C., RAMOS, M.B., ALMEIDA, H.A., PINTO, A.S. and LOPES, S.F., 2021. Effects of topographic factors on distribution of cacti along an elevation gradient in Brazilian Caatinga. Rodriguésia, vol. 72, no. 1, pp. 1-9. http://dx.doi.org/10.1590/2175-7860202172129.
http://dx.doi.org/10.1590/2175-786020217...
). In contrast, the MUFs consist of islands of moist vegetation belonging to the Atlantic Forest domain (tropical moist forest), also present in elevated areas of the semi-arid region (Tabarelli and Santos, 2004TABARELLI, M. and SANTOS, A.M.M., 2004. Uma breve descrição sobre a história natural dos brejos nordestinos. In: K.C. PORTO, J.J.P. CABRAL and M. TABARELLI, eds. Brejos de altitude em Pernambuco e Paraíba: história natural, ecologia e conservação. Brasília: Ministério do Meio Ambiente, pp. 17-24.; Rodal and Nascimento, 2006RODAL, M.J.N. and NASCIMENTO, L.M., 2006. The arboreal component of a dry forest in Northeastern Brazil. Brazilian Journal of Biology = Revista Brasileira de Biologia, vol. 66, no. 2A, pp. 479-491. http://dx.doi.org/10.1590/S1519-69842006000300014. PMid:16862303.
http://dx.doi.org/10.1590/S1519-69842006...
; Santos et al., 2007bSANTOS, A.M.M., CAVALCANTI, D.R., DA SILVA, J.M.C. and TABARELLI, M., 2007b. Biogeographical relationships among tropical forests in north-eastern Brazil. Journal of Biogeography, vol. 34, no. 3, pp. 437-446. http://dx.doi.org/10.1111/j.1365-2699.2006.01604.x.
http://dx.doi.org/10.1111/j.1365-2699.20...
; Rodal et al., 2008RODAL, M.J.N., BARBOSA, M.R.V. and THOMAS, W.W., 2008. Do the seasonal forests in northeastern Brazil represent a single floristic unit? Brazilian Journal of Biology = Revista Brasileira de Biologia, vol. 68, no. 3, pp. 467-475. http://dx.doi.org/10.1590/S1519-69842008000300003. PMid:18833467.
http://dx.doi.org/10.1590/S1519-69842008...
; Queiroz et al., 2017QUEIROZ, L.P., CARDOSO, D., FERNANDES, M.F. and MORO, M.F. 2017. Diversity and evolution of flowering plants of the Caatinga Domain. In: J.M.C. SILVA, I.R. LEAL and M. TABARELLI, eds. Caatinga: The Largest Tropical Dry Forest Region in South America. Cham: Springer, pp. 23-63.. http://dx.doi.org/10.1007/978-3-319-68339-3_2.
http://dx.doi.org/10.1007/978-3-319-6833...
; Marques et al., 2021MARQUES, M.C.M., TRINDADE, W., BOHN, A. and GRELLE, C.E.V., 2021. The Atlantic Forest: an introduction to the megadiverse forest of South America. In: M.C.M. MARQUES and C.E.V. GRELLE, eds. The Atlantic Forest: history, biodiversity, threats and opportunities of the mega-diverse forest. Cham: Springer, pp. 3-23.).

With this study, we aimed to investigate the effects of environmental filters (temperature, precipitation, and elevation) and habitat type (DUF and MUF) on the phylogenetic diversity and structure of tree communities in upland ecosystems in the Brazilian semi-arid region. We hypothesize that environmental filters display relevant roles in assembling the tree communities with phylogenetic patterns (clustering or overdispersion) according to their habitat type. Thus, we expect that an increase in the effects of environmental filtering will result in phylogenetically clustered and less diverse communities (DUF), while overdispersed and more diverse communities will occur in less stressful habitats (MUF).

2. Methods

2.1. Study area

The present study comprises 54 tree communities located in five states of the Northeast Region of Brazil: Alagoas, Ceará, Paraíba, Pernambuco, and Rio Grande do Norte (Supplementary Material, Table S1). Together, these states occupy a territorial area of approximately 385,000 km2 (IBGE, 2022INSTITUTO BRASILEIRO DE GEOGRAFIA E ESTATÍSTICA - IBGE, 2022 [viewed 5 May 2023]. Área territorial - Brasil, Grandes Regiões, Unidades da Federação e Municípios [online]. Available from: https://www.ibge.gov.br/geociencias/organizacao-do-territorio/estrutura-territorial/15761-areas-dos-municipios.html
https://www.ibge.gov.br/geociencias/orga...
). The regional climate is Bswh’ (warm semi-arid) according to the updated Köppen-Geiger climate classification (Alvares et al., 2014ALVARES, C.A., STAPE, J.L., SENTELHAS, P.C., DE MORAES GONÇALVES, J.L. and SPAROVEK, G., 2014. Köppen’s climate classification map for Brazil. Meteorologische Zeitschrift, vol. 22, no. 6, pp. 711-728. http://dx.doi.org/10.1127/0941-2948/2013/0507.
http://dx.doi.org/10.1127/0941-2948/2013...
). The states are predominantly occupied by the Caatinga, a mosaic of physiognomies influenced by variations in relief, precipitation, and soils (Moro et al., 2016MORO, M.F., NIC LUGHADHA, E., ARAÚJO, F.S. and MARTINS, F.R., 2016. A phytogeographical metaanalysis of the semiarid Caatinga domain in Brazil. Botanical Review, vol. 82, no. 2, pp. 91-148. http://dx.doi.org/10.1007/s12229-016-9164-z.
http://dx.doi.org/10.1007/s12229-016-916...
; Queiroz et al., 2017QUEIROZ, L.P., CARDOSO, D., FERNANDES, M.F. and MORO, M.F. 2017. Diversity and evolution of flowering plants of the Caatinga Domain. In: J.M.C. SILVA, I.R. LEAL and M. TABARELLI, eds. Caatinga: The Largest Tropical Dry Forest Region in South America. Cham: Springer, pp. 23-63.. http://dx.doi.org/10.1007/978-3-319-68339-3_2.
http://dx.doi.org/10.1007/978-3-319-6833...
). In the present study, we focus exclusively on the vegetation found in upland locations in the semi-arid region, particularly MUF and DUF. MUF ecosystems occur in elevated locations in the semi-arid region, such as plateaus, flat-topped hills, mountain ranges, low mountains, and peaks (Tabarelli and Santos, 2004TABARELLI, M. and SANTOS, A.M.M., 2004. Uma breve descrição sobre a história natural dos brejos nordestinos. In: K.C. PORTO, J.J.P. CABRAL and M. TABARELLI, eds. Brejos de altitude em Pernambuco e Paraíba: história natural, ecologia e conservação. Brasília: Ministério do Meio Ambiente, pp. 17-24.; Santos et al., 2007bSANTOS, A.M.M., CAVALCANTI, D.R., DA SILVA, J.M.C. and TABARELLI, M., 2007b. Biogeographical relationships among tropical forests in north-eastern Brazil. Journal of Biogeography, vol. 34, no. 3, pp. 437-446. http://dx.doi.org/10.1111/j.1365-2699.2006.01604.x.
http://dx.doi.org/10.1111/j.1365-2699.20...
; Queiroz et al., 2017QUEIROZ, L.P., CARDOSO, D., FERNANDES, M.F. and MORO, M.F. 2017. Diversity and evolution of flowering plants of the Caatinga Domain. In: J.M.C. SILVA, I.R. LEAL and M. TABARELLI, eds. Caatinga: The Largest Tropical Dry Forest Region in South America. Cham: Springer, pp. 23-63.. http://dx.doi.org/10.1007/978-3-319-68339-3_2.
http://dx.doi.org/10.1007/978-3-319-6833...
; Marques et al., 2021MARQUES, M.C.M., TRINDADE, W., BOHN, A. and GRELLE, C.E.V., 2021. The Atlantic Forest: an introduction to the megadiverse forest of South America. In: M.C.M. MARQUES and C.E.V. GRELLE, eds. The Atlantic Forest: history, biodiversity, threats and opportunities of the mega-diverse forest. Cham: Springer, pp. 3-23.). These ecosystems are refuges of the current Atlantic Forest (moist forest) that have persisted in locations with less arid and more stable conditions throughout the evolutionary history of Brazil's semi-arid region (Silveira et al., 2019SILVEIRA, M.H.B., MASCARENHAS, R., CARDOSO, D. and BATALHA-FILHO, H., 2019. Pleistocene climatic instability drove the historical distribution of forest islands in the northeastern Brazilian Atlantic Forest. Palaeogeography, Palaeoclimatology, Palaeoecology, vol. 527, no. 1, pp. 67-76. http://dx.doi.org/10.1016/j.palaeo.2019.04.028.
http://dx.doi.org/10.1016/j.palaeo.2019....
). Due to this context, MUFs are considered “islands of moist forest” within a semi-arid matrix, supporting a wide range of ecosystem services and high biodiversity (Pôrto et al., 2004PÔRTO, K.C., CABRAL, J.J.P. and TABARELLI, M., 2004. Brejos de altitude em Pernambuco e Paraíba: história natural, ecologia e conservação. 1ª ed. Brasília: Ministério do Meio Ambiente.). On the other hand, DUFs are ecosystems that house forests belonging to the phytogeographic domain of the Caatingas, dry forest sense of Pennington et al. (2009)PENNINGTON, R.T., LAVIN, M. and OLIVEIRA-FILHO, A., 2009. Woody plant diversity, evolution, and ecology in the tropics: perspectives from seasonally dry tropical forests. Annual Review of Ecology, Evolution, and Systematics, vol. 40, no. 1, pp. 437-457. http://dx.doi.org/10.1146/annurev.ecolsys.110308.120327.
http://dx.doi.org/10.1146/annurev.ecolsy...
. Therefore, they are typically associated with mountain ranges, isolated low mountains, and inselbergs (Moro et al., 2016MORO, M.F., NIC LUGHADHA, E., ARAÚJO, F.S. and MARTINS, F.R., 2016. A phytogeographical metaanalysis of the semiarid Caatinga domain in Brazil. Botanical Review, vol. 82, no. 2, pp. 91-148. http://dx.doi.org/10.1007/s12229-016-9164-z.
http://dx.doi.org/10.1007/s12229-016-916...
; Lopes et al., 2017LOPES, S.F., RAMOS, M.B. and ALMEIDA, G.R., 2017. The role of mountains as refugia for biodiversity in Brazilian Caatinga: conservationist implications. Tropical Conservation Science, vol. 10, pp. 1-12. http://dx.doi.org/10.1177/1940082917702651.
http://dx.doi.org/10.1177/19400829177026...
), and are considered “biodiversity refuges” due to their high diversity associated with the elevation gradient (Silva et al., 2014SILVA, F.K.G., FARIA LOPES, S., LOPEZ, L.C.S., DE MELO, J.I.M. and TROVÃO, D.M.B.M., 2014. Patterns of species richness and conservation in the Caatinga along elevational gradients in a semiarid ecosystem. Journal of Arid Environments, vol. 110, no. 1, pp. 47-52. http://dx.doi.org/10.1016/j.jaridenv.2014.05.011.
http://dx.doi.org/10.1016/j.jaridenv.201...
; Lopes et al., 2017LOPES, S.F., RAMOS, M.B. and ALMEIDA, G.R., 2017. The role of mountains as refugia for biodiversity in Brazilian Caatinga: conservationist implications. Tropical Conservation Science, vol. 10, pp. 1-12. http://dx.doi.org/10.1177/1940082917702651.
http://dx.doi.org/10.1177/19400829177026...
; Ramos et al., 2020RAMOS, M.B., DINIZ, F.C., ALMEIDA, H.A., ALMEIDA, G.R., PINTO, A.S., MEAVE, J.A. and LOPES, S.D.F., 2020. The role of edaphic factors on plant species richness and diversity along altitudinal gradients in the Brazilian semi-arid region. Journal of Tropical Ecology, vol. 36, no. 5, pp. 199-212. http://dx.doi.org/10.1017/S0266467420000115.
http://dx.doi.org/10.1017/S0266467420000...
).

2.2. Data acquisition

The floristic data used in the analyzes were obtained from the NeoTropTree (NTT) database (Oliveira-Filho, 2017OLIVEIRA-FILHO, A., 2017 [viewed 2 April 2020]. NeoTropTree, Flora arbórea da Região Neotropical: um banco de dados envolvendo biogeografia, diversidade e conservação [online]. Available from: http://www.neotroptree.info
http://www.neotroptree.info...
), which consists of a compilation of checklists of tree species over three meters in height derived from floristic surveys from the published literature and herbarium records. NTT has information on more than 20,000 species of woody plants and 7,000 georeferenced areas that extending from southern Florida (USA) to Patagonia. Each georeferenced area corresponds to a single type of vegetation that can occur within a radius of five kilometers.

We accessed the NTT data tab and selected the geographical data option to collect the necessary information for our study. From this option, it is possible to filter habitats based on information related to the country of occurrence, state or province, and phytogeographic domain, among other criteria. Thus, we initially filtered the study areas by state, taking into consideration the five states mentioned previously. We focused our sampling searches on the five mentioned states as they harbor most MUFs (Tabarelli and Santos, 2004TABARELLI, M. and SANTOS, A.M.M., 2004. Uma breve descrição sobre a história natural dos brejos nordestinos. In: K.C. PORTO, J.J.P. CABRAL and M. TABARELLI, eds. Brejos de altitude em Pernambuco e Paraíba: história natural, ecologia e conservação. Brasília: Ministério do Meio Ambiente, pp. 17-24.). As an additional criterion, we included communities belonging to the Atlantic Forest and Caatinga domains in the study, which are in locations that presented a minimum elevation of 600 m within the semi-arid region. We used this criterion because DUF (Silva et al., 2014SILVA, F.K.G., FARIA LOPES, S., LOPEZ, L.C.S., DE MELO, J.I.M. and TROVÃO, D.M.B.M., 2014. Patterns of species richness and conservation in the Caatinga along elevational gradients in a semiarid ecosystem. Journal of Arid Environments, vol. 110, no. 1, pp. 47-52. http://dx.doi.org/10.1016/j.jaridenv.2014.05.011.
http://dx.doi.org/10.1016/j.jaridenv.201...
; Moro et al., 2016MORO, M.F., NIC LUGHADHA, E., ARAÚJO, F.S. and MARTINS, F.R., 2016. A phytogeographical metaanalysis of the semiarid Caatinga domain in Brazil. Botanical Review, vol. 82, no. 2, pp. 91-148. http://dx.doi.org/10.1007/s12229-016-9164-z.
http://dx.doi.org/10.1007/s12229-016-916...
; Lopes et al., 2017LOPES, S.F., RAMOS, M.B. and ALMEIDA, G.R., 2017. The role of mountains as refugia for biodiversity in Brazilian Caatinga: conservationist implications. Tropical Conservation Science, vol. 10, pp. 1-12. http://dx.doi.org/10.1177/1940082917702651.
http://dx.doi.org/10.1177/19400829177026...
; Ramos et al., 2020RAMOS, M.B., DINIZ, F.C., ALMEIDA, H.A., ALMEIDA, G.R., PINTO, A.S., MEAVE, J.A. and LOPES, S.D.F., 2020. The role of edaphic factors on plant species richness and diversity along altitudinal gradients in the Brazilian semi-arid region. Journal of Tropical Ecology, vol. 36, no. 5, pp. 199-212. http://dx.doi.org/10.1017/S0266467420000115.
http://dx.doi.org/10.1017/S0266467420000...
; Diniz et al., 2021DINIZ, F.C., RAMOS, M.B., ALMEIDA, H.A., PINTO, A.S. and LOPES, S.F., 2021. Effects of topographic factors on distribution of cacti along an elevation gradient in Brazilian Caatinga. Rodriguésia, vol. 72, no. 1, pp. 1-9. http://dx.doi.org/10.1590/2175-7860202172129.
http://dx.doi.org/10.1590/2175-786020217...
) and MUF (Tabarelli and Santos, 2004TABARELLI, M. and SANTOS, A.M.M., 2004. Uma breve descrição sobre a história natural dos brejos nordestinos. In: K.C. PORTO, J.J.P. CABRAL and M. TABARELLI, eds. Brejos de altitude em Pernambuco e Paraíba: história natural, ecologia e conservação. Brasília: Ministério do Meio Ambiente, pp. 17-24.; Santos et al., 2007bSANTOS, A.M.M., CAVALCANTI, D.R., DA SILVA, J.M.C. and TABARELLI, M., 2007b. Biogeographical relationships among tropical forests in north-eastern Brazil. Journal of Biogeography, vol. 34, no. 3, pp. 437-446. http://dx.doi.org/10.1111/j.1365-2699.2006.01604.x.
http://dx.doi.org/10.1111/j.1365-2699.20...
; Queiroz et al., 2017QUEIROZ, L.P., CARDOSO, D., FERNANDES, M.F. and MORO, M.F. 2017. Diversity and evolution of flowering plants of the Caatinga Domain. In: J.M.C. SILVA, I.R. LEAL and M. TABARELLI, eds. Caatinga: The Largest Tropical Dry Forest Region in South America. Cham: Springer, pp. 23-63.. http://dx.doi.org/10.1007/978-3-319-68339-3_2.
http://dx.doi.org/10.1007/978-3-319-6833...
; Marques et al., 2021MARQUES, M.C.M., TRINDADE, W., BOHN, A. and GRELLE, C.E.V., 2021. The Atlantic Forest: an introduction to the megadiverse forest of South America. In: M.C.M. MARQUES and C.E.V. GRELLE, eds. The Atlantic Forest: history, biodiversity, threats and opportunities of the mega-diverse forest. Cham: Springer, pp. 3-23.) are intrinsically related to features such as plateaus, flat-topped hills, mountain ranges, low mountains, inselbergs, and peaks.

Based on the criteria established (i.e., five states and 600 m elevation), we selected 28 communities belonging to the Atlantic Forest domain (MUF) and 26 communities belonging to the Caatinga domain (DUF) (Figure 1), totaling 54 communities and a list of 1,015 sampled species.

Figure 1
Location of the study areas in the semi-arid region of Brazil. White dots indicate sampling points in moist upland forests; black dots indicate sampling points in dry upland forests.

We used the WorldClim database (Hijmans et al., 2005HIJMANS, R.J., CAMERON, S.E., PARRA, J.L., JONES, P.G. and JARVIS, A., 2005. Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology, vol. 25, no. 15, pp. 1965-1978. http://dx.doi.org/10.1002/joc.1276.
http://dx.doi.org/10.1002/joc.1276...
) to obtain data on mean annual temperature, mean annual precipitation, and elevation (spatial resolution of 30 arc seconds ≈ 1km2) for each sampled area. We used these variables because mean annual temperature and mean annual precipitation are two key climatic variables for species distribution at broad spatial scales (Kreft and Jetz, 2007KREFT, H. and JETZ, W., 2007. Global patterns and determinants of vascular plant diversity. Proceedings of the National Academy of Sciences of the United States of America, vol. 104, no. 14, pp. 5925-5930. http://dx.doi.org/10.1073/pnas.0608361104. PMid:17379667.
http://dx.doi.org/10.1073/pnas.060836110...
; Kooyman et al., 2012KOOYMAN, R., ROSSETTO, M., ALLEN, C. and CORNWELL, W., 2012. Australian tropical and subtropical rain forest community assembly: phylogeny, functional biogeography, and environmental gradients. Biotropica, vol. 44, no. 5, pp. 668-679. http://dx.doi.org/10.1111/j.1744-7429.2012.00861.x.
http://dx.doi.org/10.1111/j.1744-7429.20...
)

2.3. Phylogenetic reconstruction

We subsequently inserted our species list into the GBOTB.extended mega tree contained in the V.PhyloMaker package algorithm to generate a calibrated phylogeny of our study areas using the phylo.maker function (Jin and Qian, 2019JIN, Y. and QIAN, H., 2019. V.PhyloMaker: an R package that can generate very large phylogenies for vascular plants. Ecography, vol. 42, no. 8, pp. 1353-1359. http://dx.doi.org/10.1111/ecog.04434.
http://dx.doi.org/10.1111/ecog.04434...
). This mega tree is an updated and corrected version of the phylogeny for plants published by Smith and Brown (2018)SMITH, S.A. and BROWN, J.W., 2018. Constructing a broadly inclusive seed plant phylogeny. American Journal of Botany, vol. 105, no. 3, pp. 302-314. http://dx.doi.org/10.1002/ajb2.1019. PMid:29746720.
http://dx.doi.org/10.1002/ajb2.1019...
combined with the phylogeny published including pteridophytes by Zanne et al. (2014)ZANNE, A.E., TANK, D.C., CORNWELL, W.K., EASTMAN, J.M., SMITH, S.A., FITZJOHN, R.G., MCGLINN, D.J., O’MEARA, B.C., MOLES, A.T., REICH, P.B., ROYER, D.L., SOLTIS, D.E., STEVENS, P.F., WESTOBY, M., WRIGHT, I.J., AARSSEN, L., BERTIN, R.I., CALAMINUS, A., GOVAERTS, R., HEMMINGS, F., LEISHMAN, M.R., OLEKSYN, J., SOLTIS, P.S., SWENSON, N.G., WARMAN, L. and BEAULIEU, J.M., 2014. Three keys to the radiation of angiosperms into freezing environments. Nature, vol. 506, no. 7486, pp. 89-92. http://dx.doi.org/10.1038/nature12872. PMid:24362564.
http://dx.doi.org/10.1038/nature12872...
. Since the mega tree was constructed based on fossil and molecular records from GenBank and phylogenetic data from Open Tree of Life, this enables reconstructing phylogenies with high resolution, having all families and most genera resolved.

The phylo.maker function creates phylogenetic hypotheses, which generate evolutionary relationships among different species, in three scenarios (scenarios 1-3) (Jin and Qian, 2019JIN, Y. and QIAN, H., 2019. V.PhyloMaker: an R package that can generate very large phylogenies for vascular plants. Ecography, vol. 42, no. 8, pp. 1353-1359. http://dx.doi.org/10.1111/ecog.04434.
http://dx.doi.org/10.1111/ecog.04434...
). We used the hypothesis based on scenario 3 to add missing branches to generate our phylogenetic tree. Using the scenario 3, the V.Phylomaker algorithm defines the length of the taxa branches to be inserted, adding an absent genus between the basal node of its respective family, and an absent species between the basal node of its respective genus (Qian and Jin, 2016QIAN, H. and JIN, Y., 2016. An updated megaphylogeny of plants, a tool for generating plant phylogenies and an analysis of phylogenetic community structure. Journal of Plant Ecology, vol. 9, no. 2, pp. 233-239. http://dx.doi.org/10.1093/jpe/rtv047.
http://dx.doi.org/10.1093/jpe/rtv047...
). Since scenario 3 consider average distances to bind the tips of the phylogeny, it reduces bias caused by polytomies.

2.4. Phylogenetic diversity and structure

First, we calculated Faith’s Phylogenetic Diversity (PD) (Faith, 1992FAITH, D.P., 1992. Conservation evaluation and phylogenetic diversity. Biological Conservation, vol. 61, no. 1, pp. 1-10. http://dx.doi.org/10.1016/0006-3207(92)91201-3.
http://dx.doi.org/10.1016/0006-3207(92)9...
), Mean Pairwise Distance (MPD), and Mean Nearest Taxon Distance (MNTD) (Webb et al., 2002WEBB, C.O., ACKERLY, D.D., MCPEEK, M.A. and DONOGHUE, M.J., 2002. Phylogenies and community ecology. Annual Review of Ecology and Systematics, vol. 33, no. 1, pp. 475-505. http://dx.doi.org/10.1146/annurev.ecolsys.33.010802.150448.
http://dx.doi.org/10.1146/annurev.ecolsy...
). Then, we calculated their standardized effect sizes (ses): ses.PD, ses.MPD and ses.MNTD, to correct for the commonly expected collinearity effect with species richness on these metrics. The ses calculation consists of randomly extracting 999 times the same number of species present in each resultant random community, generating means of randomized communities that are compared with the communities observed for each metric (i.e., PD, MPD, and MNTD) (Kembel et al., 2010KEMBEL, S.W., COWAN, P.D., HELMUS, M.R., CORNWELL, W.K., MORLON, H., ACKERLY, D.D., BLOMBERG, S.P. and WEBB, C.O., 2010. Picante: R tools for integrating phylogenies and ecology. Bioinformatics, vol. 26, no. 11, pp. 1463-1464. http://dx.doi.org/10.1093/bioinformatics/btq166. PMid:20395285.
http://dx.doi.org/10.1093/bioinformatics...
). The ses was computed using 10,000 randomizations under the null model phylogeny pool (unconstrained null model) (Kembel and Hubbell, 2006KEMBEL, S.W. and HUBBELL, S.P., 2006. The phylogenetic structure of a neotropical forest tree community. Ecology, vol. 87, no. 7, suppl., pp. S86-S99. http://dx.doi.org/10.1890/0012-9658(2006)87[86:TPSOAN]2.0.CO;2. PMid:16922305.
http://dx.doi.org/10.1890/0012-9658(2006...
). Next, we used the values of ses.MPD, ses.MNTD and of ses.PD, to assess, respectively, if the phylogenetic structure and diversity of the communities are significantly different from the expected by chance. For that, we assessed the significance of the averaged single values of ses.PD, ses.MPD and ses.MNTD of each tree community belonging to DUF and MUF, by applying the 95% confidence interval, which ranged between 1.96 and -1.96. Values within this range (1.96 and -1.96) imply non-significance, while values outside this range deviate from the mean and are considered significant (Forthofer et al., 2006FORTHOFER, R.N., LEE, E.S. and HERNANDEZ, M., 2006. Biostatistics: a guide to design, analysis and discovery. 2nd ed. San Diego: Elsevier.; Zar, 2010ZAR, J.H., 2010. The normal distribution. In: J.H. ZAR, ed. Biostatistical analysis. 5th ed. New Jersey: Prentice Hall, pp. 66-91.). In summary, we considered values less than -1.96 as significantly clustered, greater than 1.96 as significantly overdispersed, and within the range between -1.96 and 1.96 as random (Gotelli and Entsminger, 2003GOTELLI, N.J. and ENTSMINGER, G.L., 2003. Swap algorithms in null model analysis. Ecology, vol. 84, no. 2, pp. 532-535. http://dx.doi.org/10.1890/0012-9658(2003)084[0532:SAINMA]2.0.CO;2.
http://dx.doi.org/10.1890/0012-9658(2003...
). The phylogenetic structure and diversity metrics were calculated using the functions ses.pd, ses.mpd, and ses.mntd of the picante package (Kembel et al., 2010KEMBEL, S.W., COWAN, P.D., HELMUS, M.R., CORNWELL, W.K., MORLON, H., ACKERLY, D.D., BLOMBERG, S.P. and WEBB, C.O., 2010. Picante: R tools for integrating phylogenies and ecology. Bioinformatics, vol. 26, no. 11, pp. 1463-1464. http://dx.doi.org/10.1093/bioinformatics/btq166. PMid:20395285.
http://dx.doi.org/10.1093/bioinformatics...
).

2.5. Generalized Linear Models (GLMs)

We conducted Generalized Linear Models (GLMs) with a Gaussian distribution to test whether environmental factors, such as mean annual temperature (ºC), mean annual precipitation (mm), and elevation (m), influence and explain the distribution patterns of phylogenetic diversity and structure (ses.PD, ses.MPD, and ses.MNTD) in the tree forest communities. We also added a categorical variable defined as “habitat” as a predictor to verify whether the phytophysiognomy itself influences phylogenetic diversity.

We verified the normality of the residuals of the response variables using the Shapiro-Wilk test (p<0.05) to meet the assumptions required by the analysis, while also assessing the distribution of the residuals in Q.Q Plots. We also checked for multicollinearity between the predictor variables by calculating the Variance Inflation Factor (VIF) through the vif function of the R package car (Fox and Weisberg, 2019FOX, J. and WEISBERG, S., 2019. An R companion to applied regression. 3rd ed. Thousand Oaks: Sage.). We considered a VIF value < 5 as the threshold to consider acceptable to keep predictors in the same model (Borcard et al., 2018BORCARD, D., GILLET, F. and LEGENDRE, P., 2018. Numerical ecology with R. 2nd ed. Cham: Springer. http://dx.doi.org/10.1007/978-3-319-71404-2.
http://dx.doi.org/10.1007/978-3-319-7140...
). We also verified the linear relationship between dependent and independent variables through the L2 and SUP tests using the gof package (Holst, 2015HOLST, K.K., 2015 [viewed 3 May 2021]. Model diagnostics based on cumulative residuals: the R-package gof [online]. Available from: https://arxiv.org/abs/1507.01173
https://arxiv.org/abs/1507.01173...
). All predictors were linearly related to the phylogenetic target variables.

During the pre-tests, we noticed that temperature and elevation were collinear variables (VIF > 5). Thus, we decided to create two models for each response variable. The first one includes the response variables (ses.PD, ses.MPD, and ses.MNTD) and the predictors mean annual temperature, mean annual precipitation and habitat (v. response ~ temp. + precipitation + habitat). Then, we individually evaluated the influence of elevation on the response variables (v. response ~ elevation) in the second model.

After performing the models, we tested the significance (p < 0.05) of the relationships found between the response and predictive variables using ANOVA, calculated from the built-in R function anova. All analyzes were developed in the R version 4.2.2 software program (R Core Team, 2022R CORE TEAM, 2022. R: a language and environment for statistical computing. Vienna: R Foundation for Statistical Computing.).

3. Results

We found that temperature, precipitation, and elevation influence the phylogenetic diversity and structure of semi-arid upland tree communities (Table 1). All the analyzed environmental filters (temperature, precipitation, and elevation) and habitat types (DUF and MUF) significantly influenced phylogenetic diversity (ses.PD). We observed that phylogenetic diversity (ses.PD) in upland communities (DUF or MUF) decreases with increasing temperature and increases with higher precipitation and elevation (Figure 2A-C). Regarding the index ses.MPD, we found that a significant increase in precipitation has a positive linear relationship with the increase this index values, while a decrease in temperature leads to a reduction in ses.MPD values (Figure 2D, E). Upon analyzing ses.MNTD, we discovered that an increase in temperature is significantly related to a decrease in this index values, while an increase in elevation positively influences ses.MNTD values (Figure 2G, I).

Table 1
Results of the analyses of variance (ANOVA) of the GLMs for the effects of habitat type, temperature, precipitation and elevation on ses.PD, ses.MPD, ses.MNTD.
Figure 2
Relationships between the predictive variables (temperature, precipitation and elevation) and the phylogenetic metrics (ses.PD, ses.MPD, ses.MNTD).

We also found that communities established in distinct habitats (DUF or MUF) exhibit significant phylogenetic diversity and structure differences. MUF showed greater phylogenetic diversity (ses.PD) and higher values of ses.MPD and ses.MNTD compared to DUF (Figure 3). Considering the values of ses.MPD, our results indicate that approximately 80% of MUFs exhibit a random phylogenetic structure. The remaining 20% consisted of communities that displayed significant phylogenetic overdispersion. When considering the values of ses.MNTD, the random phylogenetic structure becomes even more apparent in MUFs, as 90% of their communities showed values distributed between 1.96 and -1.96 for this metric.

Figure 3
Variation in standardized effect sizes of phylogenetic diversity (ses.PD) (A), mean pairwise distance (ses.MPD) (B) and mean nearest neighbor distance (MNTD) (C) between moist upland forests (MUF) and dry upland forests (DUF).

On the other hand, the low values of ses.MPD and ses.MNTD displayed by DUF indicates that many of their communities tend to have a more clustered phylogenetic structure than expected by chance. This tendency becomes clear when we observe that approximately 60% of DUF communities showed ses.MPD values below -1.96, indicating phylogenetic clustering based on this index. When considering ses.MNTD values, we note that 30% of DUF communities exhibited phylogenetic clustering.

4. Discussion

Our study revealed that temperature, precipitation, and elevation are environmental filters that promote significant changes in the phylogenetic structure and diversity of upland forests in the Brazilian semi-arid region. Consequently, communities established in habitats exposed to harsher environmental conditions (DUF) tend to exhibit low phylogenetic diversity and clustering, as expected. On the other hand, the communities established in habitats under lower pressure of the environmental filters (MUF) harbor higher phylogenetic diversity, and phylogenetic structure ranging from random to overdispersed, partially confirming our expectations. These results highlight the importance of environmental heterogeneity in the semi-arid region for determining distinct phylogenetic patterns in upland communities.

Precipitation and temperature were the primary environmental filters influencing the species phylogenetic relationships. This is congruent with the importance of higher water availability and moderate temperatures as essential drivers of increased phylogenetic diversity in upland forests (Qian et al., 2014QIAN, H., HAO, Z. and ZHANG, J., 2014. Phylogenetic structure and phylogenetic diversity of angiosperm assemblages in forests along an elevational gradient in Changbaishan, China. Journal of Plant Ecology, vol. 7, no. 2, pp. 154-165. http://dx.doi.org/10.1093/jpe/rtt072.
http://dx.doi.org/10.1093/jpe/rtt072...
; Zhang et al., 2020ZHANG, C., ZHOU, H. and MA, Z., 2020. Phylogenetic structure of alpine steppe plant communities along a precipitation and temperature gradient on the Tibetan Plateau. Global Ecology and Conservation, vol. 24, e01379. http://dx.doi.org/10.1016/j.gecco.2020.e01379.
http://dx.doi.org/10.1016/j.gecco.2020.e...
; Cisneros et al., 2021CISNEROS, C.M.G., HERINGER, G., DOMEN, S.M., SÁNCHEZ, L.R. and MEIRA-NETO, J.A.A., 2021. The environmental filtering and the conservation of tropical dry forests in mountains in a global change scenario. Biodiversity and Conservation, vol. 30, no. 10, pp. 2689-2705. http://dx.doi.org/10.1007/s10531-021-02215-6.
http://dx.doi.org/10.1007/s10531-021-022...
; Tolmos et al., 2022TOLMOS, M.L., KREFT, H., RAMIREZ, J., OSPINA, R. and CRAVEN, D., 2022. Water and energy availability mediate biodiversity patterns along an elevational gradient in the tropical Andes. Journal of Biogeography, vol. 49, no. 4, pp. 712-726. http://dx.doi.org/10.1111/jbi.14332.
http://dx.doi.org/10.1111/jbi.14332...
). Although elevation is also an essential variable influencing the patterns of phylogenetic diversity and structure of upland forests (Mattos et al., 2019MATTOS, J.S., MORELLATO, L.P.C., CAMARGO, M.G.G. and BATALHA, M.A., 2019. Plant phylogenetic diversity of tropical mountaintop rocky grasslands: local and regional constraints. Plant Ecology, vol. 220, no. 12, pp. 1119-1129. http://dx.doi.org/10.1007/s11258-019-00982-5.
http://dx.doi.org/10.1007/s11258-019-009...
; Campos et al., 2021CAMPOS, P.V., SCHAEFER, C.E.G.R., PONTARA, V., SENRA, E.O., VIANA, P.L., OLIVEIRA, F.S., CANDIDO, H.G. and VILLA, P.M., 2021. Exploring the relationship between soil and plant evolutionary diversity in the Roraima table mountain OCBIL, Guayana Highlands. Biological Journal of the Linnean Society, vol. 133, no. 2, pp. 587-603. http://dx.doi.org/10.1093/biolinnean/blab013.
http://dx.doi.org/10.1093/biolinnean/bla...
, Campos et al. 2022bCAMPOS, P.V., SCHAEFER, C.E.G.R., PONTARA, V., XAVIER, M.V.B., VALE JÚNIOR, J.F., CORRÊA, G.R. and VILLA, P.M., 2022b. Local-scale environmental filtering shape plant taxonomic and phylogenetic diversity in an isolated Amazonian tepui (Tepequém table mountain). Evolutionary Ecology, vol. 36, no. 1, pp. 55-73. http://dx.doi.org/10.1007/s10682-021-10141-w.
http://dx.doi.org/10.1007/s10682-021-101...
), its effect on phylogenetic diversity and structure was less pronounced than precipitation and temperature in our study. Since elevation directly affects local environmental conditions (e.g., temperature, atmospheric pressure, soils), its impact on biological communities is indirect (Körner et al., 2017KÖRNER, C., JETZ, W., PAULSEN, J., PAYNE, D., RUDMANN-MAURER, K. and M. SPEHN, E., 2017. A global inventory of mountains for bio-geographical applications. Alpine Botany, vol. 127, no. 1, pp. 1-15. http://dx.doi.org/10.1007/s00035-016-0182-6.
http://dx.doi.org/10.1007/s00035-016-018...
), thus possibly masking its actual effects in our analysis.

Despite its minor effect on the phylogenetic diversity of our studied upland forests, elevation is a relevant factor due to its influence on variations have temperature and precipitation that lead to orographic rainfall in the semi-arid region (Lyra et al., 2014LYRA, G.B., OLIVEIRA-JÚNIOR, J.F. and ZERI, M., 2014. Cluster analysis applied to the spatial and temporal variability of monthly rainfall in Alagoas state, Northeast of Brazil. International Journal of Climatology, vol. 34, no. 13, pp. 3546-3558. http://dx.doi.org/10.1002/joc.3926.
http://dx.doi.org/10.1002/joc.3926...
; Andrade et al., 2016ANDRADE, E.M., TORRES SENA, M.G., SILVA, A.G.R., PEREIRA, F.J.S. and LOPES, F.B., 2016. Uncertainties of the rainfall regime in a tropical semi-arid region: the case of the State of Ceará. Agroambiente On-Line, vol. 10, no. 2, pp. 88-95. http://dx.doi.org/10.18227/1982-8470ragro.v10i2.3500.
http://dx.doi.org/10.18227/1982-8470ragr...
; Mutti et al., 2020MUTTI, P.R., ABREU, L.P., ANDRADE, L.M.B., SPYRIDES, M.H.C., LIMA, K.C., OLIVEIRA, C.P., DUBREUIL, V. and BEZERRA, B.G., 2020. A detailed framework for the characterization of rainfall climatology in semiarid watersheds. Theoretical and Applied Climatology, vol. 139, no. 1-2, pp. 109-125. http://dx.doi.org/10.1007/s00704-019-02963-0.
http://dx.doi.org/10.1007/s00704-019-029...
). Orographic rainfall occurs when moist air masses encounter elevated areas, and the lower atmospheric pressure and temperature cause water vapor to condense, forming clouds and increasing local precipitation (Roe, 2004ROE, G.H., 2004. Orographic precipitation. Annual Review of Earth and Planetary Sciences, vol. 33, no. 1, pp. 645-671. http://dx.doi.org/10.1146/annurev.earth.33.092203.122541.
http://dx.doi.org/10.1146/annurev.earth....
). This phenomenon might have been directly linked to the patterns of phylogenetic diversity that we observed, as the increase in ses.PD corresponds to lower temperatures, higher precipitation, and elevation. Moreover, locations exposed to orographic rainfall typically harbor moist ecosystems within the semi-arid region, such as MUF (Queiroz et al., 2017QUEIROZ, L.P., CARDOSO, D., FERNANDES, M.F. and MORO, M.F. 2017. Diversity and evolution of flowering plants of the Caatinga Domain. In: J.M.C. SILVA, I.R. LEAL and M. TABARELLI, eds. Caatinga: The Largest Tropical Dry Forest Region in South America. Cham: Springer, pp. 23-63.. http://dx.doi.org/10.1007/978-3-319-68339-3_2.
http://dx.doi.org/10.1007/978-3-319-6833...
), which exhibited the highest values of ses.PD, ses.MPD and ses.MNTD in our study. Therefore, our findings suggest that orographic rainfall may represent a critical factor in enhancing phylogenetic diversity in upland forests in the semi-arid region, as less stressful environmental conditions and greater resource availability tend to favor an increase in the number of lineages in upland plant communities (Qian et al., 2023QIAN, H., KESSLER, M. and JIN, Y., 2023. Spatial patterns and climatic drivers of phylogenetic structure for ferns along the longest elevational gradient in the world. Ecography, vol. 2023, no. 1, e06516. http://dx.doi.org/10.1111/ecog.06516.
http://dx.doi.org/10.1111/ecog.06516...
).

As stress imposed by environmental filtering increased, exemplified by higher temperatures, we observed a decrease in the values of phylogenetic metrics (i.e., ses.PD, ses.MPD and ses.MNTD). This pattern was expected since factors related to increased water stress tend to reduce phylogenetic diversity in plant communities due to the exclusion of non-tolerant species (Anacker and Harrison, 2012ANACKER, B.L. and HARRISON, S.P., 2012. Historical and ecological controls on phylogenetic diversity in Californian plant communities. American Naturalist, vol. 180, no. 2, pp. 257-269. http://dx.doi.org/10.1086/666650. PMid:22766935.
http://dx.doi.org/10.1086/666650...
). Thus, our results indicate that the increase in environmental stress in the semi-arid region leads to the assembly of communities mostly composed of phylogenetically close species adapted to harsher conditions, as also observed in other upland forests (González-Caro et al., 2014GONZÁLEZ-CARO, S., UMAÑA, M.N., ÁLVAREZ, E., STEVENSON, P.R. and SWENSON, N.G., 2014. Phylogenetic alpha and beta diversity in tropical tree assemblages along regional-scale environmental gradients in northwest South America. Journal of Plant Ecology, vol. 7, no. 2, pp. 145-153. http://dx.doi.org/10.1093/jpe/rtt076.
http://dx.doi.org/10.1093/jpe/rtt076...
; Liu et al., 2019LIU, M., CHE, Y., JIAO, J., LI, L. and JIANG, X., 2019. Exploring the community phylogenetic structure along the slope aspect of subalpine meadows in the eastern Qinghai-Tibetan Plateau, China. Ecology and Evolution, vol. 9, no. 9, pp. 5270-5280. http://dx.doi.org/10.1002/ece3.5117. PMid:31110678.
http://dx.doi.org/10.1002/ece3.5117...
; Zhang et al., 2020ZHANG, C., ZHOU, H. and MA, Z., 2020. Phylogenetic structure of alpine steppe plant communities along a precipitation and temperature gradient on the Tibetan Plateau. Global Ecology and Conservation, vol. 24, e01379. http://dx.doi.org/10.1016/j.gecco.2020.e01379.
http://dx.doi.org/10.1016/j.gecco.2020.e...
; Cisneros et al., 2021CISNEROS, C.M.G., HERINGER, G., DOMEN, S.M., SÁNCHEZ, L.R. and MEIRA-NETO, J.A.A., 2021. The environmental filtering and the conservation of tropical dry forests in mountains in a global change scenario. Biodiversity and Conservation, vol. 30, no. 10, pp. 2689-2705. http://dx.doi.org/10.1007/s10531-021-02215-6.
http://dx.doi.org/10.1007/s10531-021-022...
).

When analyzing the differences in phylogenetic diversity and structure patterns between habitats, we noticed that although MUFs have higher phylogenetic diversity and overdispersion than DUFs, they tend to exhibit random phylogenetic structure, which contradicts part of our initial expectations. This phylogenetic random trend might be an outcome of unmeasured stochastic influence (e.g., dispersal limitation) inherently encompassed in our study (Vellend, 2010VELLEND, M., 2010. Conceptual synthesis in community ecology. The Quarterly Review of Biology, vol. 85, no. 2, pp. 183-206. http://dx.doi.org/10.1086/652373. PMid:20565040.
http://dx.doi.org/10.1086/652373...
). However, the observed MUF communities exhibiting phylogenetic overdispersion regarding the basal clades and older nodes (ses.MPD) could be related to the formation process of these habitats. According to Costa et al. (2018)COSTA, G.C., HAMPE, A., LEDRU, M.P., MARTINEZ, P.A., MAZZOCHINI, G.G., SHEPARD, D.B., WERNECK, F.P., MORITZ, C., CARNAVAL, A.C. and FORTIN, M.-J., 2018. Biome stability in South America over the last 30 kyr: inferences from long-term vegetation dynamics and habitat modelling. Global Ecology and Biogeography, vol. 27, no. 3, pp. 285-297. http://dx.doi.org/10.1111/geb.12694.
http://dx.doi.org/10.1111/geb.12694...
, the climate (Last 30,000 years) constrained MUFs to isolated enclaves in northeastern Brazil, while most of their surroundings were occupied by seasonally dry forests (Caatinga). These MUF enclaves maintained more stable and less stressful climatic conditions than their surrounding areas (Silveira et al., 2019SILVEIRA, M.H.B., MASCARENHAS, R., CARDOSO, D. and BATALHA-FILHO, H., 2019. Pleistocene climatic instability drove the historical distribution of forest islands in the northeastern Brazilian Atlantic Forest. Palaeogeography, Palaeoclimatology, Palaeoecology, vol. 527, no. 1, pp. 67-76. http://dx.doi.org/10.1016/j.palaeo.2019.04.028.
http://dx.doi.org/10.1016/j.palaeo.2019....
). Thus, in this study, for some MUFs this scenario may have favored increased phylogenetic diversity and structural patterns toward overdispersion. Environments with higher productivity, moderate climatic conditions and higher availability of resources tend to support greater species diversity (Kreft and Jetz, 2007KREFT, H. and JETZ, W., 2007. Global patterns and determinants of vascular plant diversity. Proceedings of the National Academy of Sciences of the United States of America, vol. 104, no. 14, pp. 5925-5930. http://dx.doi.org/10.1073/pnas.0608361104. PMid:17379667.
http://dx.doi.org/10.1073/pnas.060836110...
; Ricklefs and He, 2016RICKLEFS, R.E. and HE, F., 2016. Region effects influence local tree species diversity. Proceedings of the National Academy of Sciences of the United States of America, vol. 113, no. 3, pp. 674-679. http://dx.doi.org/10.1073/pnas.1523683113. PMid:26733680.
http://dx.doi.org/10.1073/pnas.152368311...
).

The phylogenetic clustering observed in DUF communities possibly also depicts their historical processes linked to the formation of their regional pool of species. Although current semi-arid conditions have only been established in the last 4,500 years (Oliveira et al., 1999OLIVEIRA, P.E., BARRETO, A.M.F. and SUGUIO, K., 1999. Late Pleistocene/Holocene climatic and vegetational history of the Brazilian caatinga: the fossil dunes of the middle São Francisco River. Palaeogeography, Palaeoclimatology, Palaeoecology, vol. 152, no. 3-4, pp. 319-337. http://dx.doi.org/10.1016/S0031-0182(99)00061-9.
http://dx.doi.org/10.1016/S0031-0182(99)...
), fossil records indicate that some of the most representative plant groups of today's Neotropical dry forests diversified in the Miocene (Pennington et al., 2018PENNINGTON, R.T., LEHMANN, C.E.R. and ROWLAND, L.M., 2018. Tropical savannas and dry forests. Current Biology, vol. 28, no. 9, pp. R541-R545. http://dx.doi.org/10.1016/j.cub.2018.03.014. PMid:29738723.
http://dx.doi.org/10.1016/j.cub.2018.03....
). Furthermore, phylogenetic studies show that Neotropical dry forests exhibit a high degree of monophyly and phylogenetic conservatism (Pennington et al., 2009PENNINGTON, R.T., LAVIN, M. and OLIVEIRA-FILHO, A., 2009. Woody plant diversity, evolution, and ecology in the tropics: perspectives from seasonally dry tropical forests. Annual Review of Ecology, Evolution, and Systematics, vol. 40, no. 1, pp. 437-457. http://dx.doi.org/10.1146/annurev.ecolsys.110308.120327.
http://dx.doi.org/10.1146/annurev.ecolsy...
). This is congruent with our results showing that the phylogenetic clustering in DUF communities is more related to basal nodes and older clades (ses.MPD) of the phylogenetic tree.

Overall, our results indicate that the studied tree communities' phylogenetic components (diversity and structure) are sensitive to variations in temperature and precipitation. This supports a major concern, as studies predict drought events will become more intense and frequent in northeastern Brazil throughout this century (Marengo and Bernasconi, 2015MARENGO, J.A. and BERNASCONI, M., 2015. Regional differences in aridity/drought conditions over Northeast Brazil: present state and future projections. Climatic Change, vol. 129, no. 1-2, pp. 103-115. http://dx.doi.org/10.1007/s10584-014-1310-1.
http://dx.doi.org/10.1007/s10584-014-131...
; Marengo et al., 2017MARENGO, J.A., TORRES, R.R. and ALVES, L.M., 2017. Drought in Northeast Brazil: past, present, and future. Theoretical and Applied Climatology, vol. 129, no. 3-4, pp. 1189-1200. http://dx.doi.org/10.1007/s00704-016-1840-8.
http://dx.doi.org/10.1007/s00704-016-184...
). If these predictions are confirmed, MUFs may be one of the most affected ecosystems within the semi-arid context, as the phylogenetic patterns observed in these communities are associated with less stressful environmental conditions. Consequently, a potential increase in temperature and decrease in precipitation could contribute to the extinction of species with low drought tolerance found in MUFs, such as the tree ferns from the genera Alsophila and Cyathea (Supplementary Material, Table S2), causing significant phylogenetic diversity loss in their communities.

5. Conclusion

Our findings lead us to conclude that greater resource availability (higher precipitation, i.e., water availability) and milder environmental conditions (i.e., lower temperature) were critical factors in increasing phylogenetic diversity, expressed by ses.PD, ses.MPD, and ses.MNTD. Our results also allowed us to conclude that the phylogenetic diversity and structure are also significantly influenced by the habitat type (MUF or DUF) in upland forests of the Brazilian semi-arid region. Thus, these results allow us to better understand the mechanisms driving the phylogenetic diversity and structure of upland forests in the semi-arid region and provide clues on how these communities might be affected by future environmental changes.

Thus, we hope that our contribution to a better understanding of the mechanisms driving the phylogenetic diversity and structure of upland forests in the semi-arid region may encourage further studies. Considering the present, we believe that additional research could explore the influence of other filters, such as soils and chronic anthropogenic disturbances, on the phylogenetic patterns of the communities studied. In light of future risks, studies presenting modeling for different climate change scenarios are important for more accurately understanding how the phylogenetic component of these communities may respond to increased environmental stress. Integrating these approaches could improve our ability to predict and mitigate the impacts of global changes on these communities and their associated ecosystems.

Acknowledgements

We thank Programa de Apoio à Pós-Graduação - PROAP and Programa de Pós-graduação em Etnobiologia e Conservação da Natureza for financial support; ASP thanks Fundação de Apoio à Pesquisa do Estado da Paraíba - FAPESQ and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES for a doctoral scholarship (grant nº 423/18); SFL thanks Universidade Estadual da Paraíba - UEPB for financial support.

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Publication Dates

  • Publication in this collection
    30 Oct 2023
  • Date of issue
    2023

History

  • Received
    06 May 2023
  • Accepted
    24 Aug 2023
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