Introduction
Bats are one of the most successful groups of mammals on Earth. This, in part, is due to several evolutionary traits acquired, such as flight capacity, echolocation ability and nocturnal habits. In Brazil, bats represent 25% of the mammals described, totaling 179 species distributed in 68 genera and nine families, a significatively high diversity that represents 16% of the species described in the world and still increasing with the new findings in this decade (Gardner 2007, Paglia et al. 2012, Nogueira et al. 2014).
Bats are the only mammals that successfully explore the caves (Kunz 1982), permanently establishing trogloxenes populations (organisms with epigean source populations) that use resources from subterranean habitats, as shelter, for instance, but also bringing organic material from the epigean environment (Trajano 2012). Ecologically, bats have an important role on caves, because their faeces, known as guano, represent an energy source to the subterranean biota (Gnaspini & Trajano 2000).
Many species of bats use caves as shelters (Kunz & Lumsden 2003) seeking protection against climate variation, predation and potential competitors (Kunz 1982). Their preferences regarding shelters are also influenced by structure, distribution and diversity of caves and abundance of resources (Trajano 1985, Kunz & Lumsden 2003).
There are a number of studies in the Southeast Brazil regarding cave chiropteran assemblages. Among them are the studies on cave-dwelling bats at the Atlantic Forest in Vale do Ribeira, São Paulo carried out by Trajano (1985) and by Campanhã & Fowler (1993) also in remnant fragments of Atlantic Forest in Corumbataí municipality, São Paulo. For other regions of Brazil, in the North it can be cited the study of Cajaiba (2014) in sandstone caves in Uruará, Pará; in the west central region Bredt et al. (1999) studied the bat assemblages of 20 caves in Federal District, which have the Cerrado as the predominant vegetation and Esbérard et al. (2005), who studied the caves of an Environmental Protection Area caves also predominantly in the Cerrado, in the state of Goiás. In the South region Arnone & Passos (2007) studied the bat assemblages caves located in mixed Atlantic Rainforest in the state of Paraná. Bat assemblages of Northeast have were analized by Sbragia & Cardoso (2008) for caves in Cerrado Atlantic Forest and Caatinga in Bahia. These authors evidenced the relevance of studies on cave environments, due to their capacity to provide shelters for species that are relevant to the functioning of these habitats and associated communities. A review of data on bat assemblages of several Brazilian caves is provided by Guimarães & Ferreira (2014).
Bats occupy caves of different lithologies, as observed by Trajano (1985) and by Bredt et al. (1999), who concluded that the selection of cave shelters can be more influenced by the amount of other caves in the area than by the cave characteristics. Àvilla-Flores & Medellín (2001) found that for bat assemblages of 18 caves in Mexico, the lithology (limestone and silisiclastic caves) had no significant effect on bat selection of caves. Nevertheless, cave attributes as size and complexity can be important for bat assemblage species composition. For example, Brunet & Meddellin (2001) also for bat cave assemblages in Mexico found a positive relationship between species richness and cave surface area and complexity.
Granitic caves are relatively rare when compared to carbonatic ones (Juberthie 2000). Usually granitic caves are small, may vary in shape (Twidale & Bourne 2008) and their final structure is shaped mainly by the power of water (Romaní et al. 2010). They are often formed by large agglomerates of blocks with many openings, becoming natural entrances to the subterranean environment. The high number of openings observed in granitic caves leads to a direct influence of the surface environment on their communities (Romaní et al. 2010). Studies comparing granitic and other lithology caves regarding bats species composition have not yet been published in Brazil.
Several studies on bat populations from different regions analyze the influence of seasonality (dry and wet seasons) on the assemblage composition, diet and population densities showing that the main factor for changes is the food availability throughout the year, which is in turn influenced by seasonality (Stevens & Amarilla-Stevens 2012). This fact was evidenced for bat assemblages from the Amazonian forest (Bobrowiec et al. 2014) and from Atlantic Rainforest (Ribeiro-Mello 2009, Ortêncio-Filho et al. 2010, Stevens & Amarilla-Stevens 2012, Stevens 2013, Lourenço et al. 2014). For cave bats from Atlantic Rainforest in the Alto Ribeira region, São Paulo state, Trajano (1985) and Arnone (2008) suggested the existence of seasonality, at least for some species.
We analyzed herein the bat assemblage of the granitic cave Gruta do Riacho Subterrâneo and its surroundings. The analysis is based on the changes in the species composition and population relative abundances during twelve months, involving periods of contrasting pluviosity to test the hypothesis that seasonality affect bat assemblages.
Methodology
1. Studied Area.
The cave studied is the "Gruta do Riacho Subterrâneo" (23°16'10.40"S, 47°13'49.79"W, 726 m above sea level), located in the city of Itu - state of São Paulo, Brazil, and belongs to Itu's post-orogenic granite suite (Grupo Pierre Martin de Espeleologia 2014) (Figure 1 A, B). This cave is amongst the six largest granite caves in the world, and it is so far the largest of the Southern Hemisphere, with approximately 1,415 meters of linear development, formed by the superposition of several blocks. The cave has many entrances offering various routes for bats.

Source: Grupo Pierre Martin de Espeleologia, 2014
Figure 1 (A) Maps showing the location of Gruta do Riacho Subterrâneo in South America and in Itu municipality, SP. (B) Geological formation
The region where the cave is located is characterized by humid subtropical climate with dry winters and warm summers (Cfa) according to Köeppen (1948). The regional vegetation is a transition of Cerrado, ombrophilous dense forest, stational semidecidual forest, and the ecotone zone among these vegetations (Rizzini 1997). Vegetation around the cave is nevertheless under strong anthropogenic pressure since the beginning of economic development in the São Paulo state highlands (Grupo Pierre Martin de Espeleologia 2014). In the surrounding area there is a small stream close to the cave and another in its interior, providing water resources to the bat assemblage and other communities present. Also, there is a small cave at a few meters distance and a large one at approximately 6 Km. It must be pointed out that several fires happened in 2010 in the surroundings of Gruta do Riacho Subterrâneo cave (Bichuette, M. E. personal observation) evidencing another type of disturbance the cave and its surrounding area undergo, making them even more altered.
Due to the granitic origin of the cave it is difficult to precisely establish the amount of existing saloons, since this is a non-regular cave along its whole extension being formed by superimposed granitic blocks, thus offering many entrances and possible routes to bats.
2. Bat Samplings and Environmental Variables Measurements
Samplings were carried out every two or three months in the period from October 2013 to September 2014. The first sampling (pilot) took place in August 2013, in order to define where the mist-nets could be placed. Table 1 shows the sampling dates, with October, December and March representing the rainy season and June and September representing the dry one (INMET 2014).
Table 1 Sampling days at Gruta do Riacho Subterrâneo and surroundings, Itu municipality, SP.
Year | Month and period | Days | ||
---|---|---|---|---|
2013 | October (rainy) | 19 | 20 | 21 |
December (rainy) | 16 | 17 | 18 | |
2014 | March (rainy) | 17 | 18 | 19 |
June (dry) | 28 | 29 | 30 | |
September (dry) | 2 | 3 | ª |
ªNo sampling due to rainfall.
Four or five mist-nets were set at the entrances of the caves in each of the three sampling days. Two other nets were set outside the cave (in a pasture and near a stream), in the first and in the third sampling days. These places were defined considering their dimensions and accessibility (Figure 2). It is important to emphasize that the cave has many entrances, so it is difficult to cover all possible routes for bats. The mist nets had three different sizes (4 x 3 m; 6 x 3 m and 7 x 3 m), installed in according to the entrance sizes. In the pasture we used a 7 x 3 m net and close the stream a 4 x 3 m net. The nets were set before sunset and were exposed for five hours, with regular checks every 20-30 minutes.

Author: Ives Arnone
Figure 2 A view of sampling mist-nets at Gruta do Riacho Subterrâneo cave, Itu municipality, SP.
After captured, the specimens were identified on-site at species or genus level, and some were kept to allow a more accurate identification in the laboratory by utilizing specific identification keys (Vizzoto & Taddei 1973, Gardner 2007 and Reis et al. 2013). The specimens were deposited in the reference collection at Subterranean Studies Laboratory of the Federal University of São Carlos (LES - UFSCar).
Measurements of temperature (°C) and relative humidity (%) were obtained with a thermo-hygrometer (Instrutherm THAL-300; 0.1 resolution ± 5.0% accuracy) and monthly precipitation values were obtained from the National Institute of Meteorology (INMET, 2014), from the nearest station of Itu municipality. The moon phase was recorded in each collection day and posteriorly checked in a moon phase Table for each sampling day and month. To attribute a value for the moonlight luminosity of each lunar phase we used the following scale: new moon = one, horning = two, waning = tree, and full moon = four, as usually suggested for quantitative analysis based on qualitative evaluations.
3. Data Analysis
Capture effort was calculated according to Straube & Bianconi (2002). A sample-based species accumulation curve was plotted to analyze the Sufficiency Sampling Size, using "EstimateS" software (Colwell 2005). The relative abundance of each species was calculated and expressed as a percentage of the total assemblage abundance, in order to show their representativeness in the assemblage.
A multiple regression analysis was performed to verify the influence of the abiotic variables (temperature, relative humidity and pluviosity) over the abundance of the assemblage. Later on, the Akaike information criterion (AIC) was applied, in order to select the best representative model (Akaike 1970). A canonical correspondence analysis (CCA) was performed to verify the influence of the abiotic data matrix (temperature, relative humidity, moonligth and pluviosity) over the species abundance and assemblage richness. These analyses were carried out using the statistical software "R Development Core Team 2011".
Results
The capture effort was 6,090 m2. h resulting on 113 captured individuals belonging to 15 species and two families. Eight species were recorded in the mist-nets settled in the cave (entrance and interior) and 11 were recorded in the cave surroundings, approximately 20 meters from the rocky outcrop that contains the cave (near the external stream and near the pasture) (Table 2). Amongst the captured bats, around 80% belonged to the Phyllostomidae family, while the others were represented by species belonging to the Vespertilionidae family. In Figure 3 the species accumulation curve is presented showing that the curve asymptote was not reached.
Table 2 Species recorded and feeding habits for bat assemblage of Gruta do Riacho Subterrâneo and surroundings, Itu municipality, SP.
Family | Subfamily | Specie | Feeding habit | Cave | Surroundings | Captures |
---|---|---|---|---|---|---|
Phyllostomidae | Desmodontinae | Desmodus rotundus (E. Geoffroy, 1810) | Haematophagus | 33 | 3 | 36 |
Glossophaginae | Anoura caudifer (E. Geoffroy, 1818) | Nectarivores/Onivores | 1 | 1 | 2 | |
Anoura geoffroyi Gray, 1838 | Nectarivores/Onivores | 1 | 0 | 1 | ||
Glossophaga soricina (Pallas, 1766) | Nectarivores/Onivores | 8 | 0 | 8 | ||
Phyllostominae | Chrotopterus auritus (Peters, 1856) | Carnivores | 2 | 1 | 3 | |
Micronycteris sp. Gray, 1866 | Insectivores/Frugivores | 1 | 0 | 1 | ||
Carolliinae | Carollia perspicillata (Linnaeus, 1758) | Frugivores/Onivores | 32 | 14 | 46 | |
Stenodermatinae | Artibeus fimbriatus Gray, 1838 | Frugivores/Onivores | 0 | 2 | 2 | |
Artibeus lituratus (Olfers, 1818) | Frugivores/Onivores | 0 | 2 | 2 | ||
Chiroderma doriae Thomas, 1891 | Frugivores | 0 | 1 | 1 | ||
Platyrrhinus lineatus (E. Geoffroy, 1810) | Frugivores | 0 | 2 | 2 | ||
Sturnira lilium (E. Geoffroy, 1810) | Frugivores/Onivores | 0 | 10 | 10 | ||
Sturnira tildae de la Torre, 1959 | Frugivores/Nectarivores | 0 | 1 | 1 | ||
Vespertilionidae | Eptesicus diminutus Osgood, 1815 | Insectivores | 0 | 1 | 1 | |
Myotis sp. Kaup, 1829 | Insectivores | 26 | 0 | 26 | ||
Total: 2 families | 15 species | 104 | 38 | 142 |

Figure 3 Accumulation curve for the species sampled at Gruta do Riacho Subterrâneo cave, Itu municipality, SP. Solid line represents the rarefaction curve and the dotted lines represent the 95% confidence limits.
Figure 4 shows the relative abundances of the species, organized according to the environment in which they were found (outside or inside the cave). Some species were more abundant, such as Carollia perspicillata (30.8%), Desmodus rotundus (29.6%) and a species of genus Myotis sp. (23.4%), while others were much less abundant and even had single capture events, such as Anoura geoffroyi, Micronycteris sp., Chiroderma doriae, Sturnira tildae and Eptesicus diminutus.

Figure 4 Bat relative abundances recorded for Gruta do Riacho Subterrâneo cave and surroundings, Itu municipality, SP. D. r. = Desmodus rotundus; C. p. = Carollia perspicillata; M. sp = Myotis sp.; G. s. = Glossophaga soricina; C. a. = Chrotopterus auritus; A. c. = Anoura caudifer; A. g. = Anoura geoffroyi; Mic.sp = Micronycteris sp.; A. f. = Artibeus fimbriatus; A.l. = Artibeus lituratus; C.d. = Chiroderma doriae; E.d.= Eptesicus diminutus; P.l. = Platirhynus lineatus; S. l. = Sturnira lilium; S.t. = Sturnira tildae.
Bat abundances were not related to environmental variables as indicated by the multiple regression analysis (F = 0.344, df = 3, p = 0.833; temperature, p = 0.495; relative humidity, p = 0.587 and pluviosity, p = 0.525). The application of the Akaike information criterion showed that using the three abiotic variables together would be the model resulting less information loss in data analysis. In the canonical correspondence analysis the relative humidity was the most important factor in the first axis, positively related to the bat assemblage richness and population abundances of the species A. caudifer, P. lineatus, A. fimbriatus and S. lilium in the months of March and September and negatively related with the abundances of Micronycteris sp. and A. geoffroyi in the months of December and October (Table 3). Pluviosity representing the main factor in axis two was not significantly related with bat abundances (Figure 5 A). The variables temperature and moonlight were not significantly related to the abundance of the species (Fig. 5 B).
Table 3 Canonical correspondence analysis valoes of the correlation between abiotic variables and bat species abundances.
Axis 1 | Axis 2 | Pr (>r) | |
---|---|---|---|
Temperature (°C) | -0.35900 | 0.93334 | 0.1417 |
Relative humidity (%) | 0.99873 | -0.05032 | 0.0166 |
Rainfall (mm) | 0.2816 | 0.95952 | 0.2000 |
Moonlight | -0.58784 | 0.80898 | 0.2000 |
Cumulative proportion of explicability (humidity and Rainfall) | 0.2717 | 0.4811 | |
Cumulative proportion of explicability (Temperature and moonlight) | 0.2333 | 0.4414 |

Figure 5A Canonical correspondence analysis relating relative humidity and pluviosity and bat richness and abundances at Gruta do Riacho Subterrâneo and surroundings, Itu municipality, SP. A. cau = Anoura caudifer; P. lin. = Platirhynus lineatus; A. fim = Artibeus fimbriatus; A. lit = Artibeus lituratus; G. sor. = Glossophaga soricina; Mic = Micronycteris sp.; A. geo = Anoura geoffroyi; Myo = Myotis sp.; D. rot. = Desmodus rotundus; C. aur = Chrotopterus auritus; S. lil = Sturnira lilium; C. per = Carollia perspicillata.; Oct = October 2013; Dec. = December 2013; Mar = March, 2014; Jun = June 2014 and Sep = September, 2014.
Figure 5B Canonical correspondence analysis relating temperature and moonlight on bat richness and abundances at Gruta do Riacho Subterrâneo and surroundings, Itu municipality, SP. A. cau = Anoura caudifer; P. lin. = Platirhynus lineatus; A. fim = Artibeus fimbriatus; A.lit = Artibeus lituratus; G.sor. = Glossophaga soricina; Mic = Micronycteris sp.; A. geo = Anoura geoffroyi; Myo = Myotis sp.; D. rot. = Desmodus rotundus; C. aur = Chrotopterus auritus; S. lil = Sturnira lilium; C. per = Carollia perspicillata.; Oct = October 2013; Dec. = December 2013; Mar = March, 2014; Jun = June 2014 and Sep = September, 2014.
Discussion
1. Bat Assemblage Composition
Among the 15 species recorded in this study only eight were found in the interior of Gruta do Riacho Subterrâneo, whereas the other seven were captured in the surroundings. From the eight species found in the interior of this granitic cave, six were already recorded by Trajano (1985) and by Arnone (2008) in Vale do Ribeira Atlantic Rainforest caves. Individuals from two genera, Myotis sp. and Micronycteris sp. could not be included in the comparison because they were not yet identified to the species level.
Among the seven species collected only in the surroundings of the Gruta do Riacho Subterrâneo (pasture or native vegetation) six have also been previously recorded by Trajano (1985) and by Arnone (2008) in Vale do Ribeira caves. Only one species, Epitesicus diminutus, captured in the pasture nearby the cave, was not previously recorded by these two authors in Vale do Ribeira caves. According to Reis et al. (2013) this species is found in primary and secondary forests and forest fragments, but also in open areas and urban environments. In São Paulo State it was previously recorded in the Atlantic Forest at Morro do Diabo State Park, where it is also a rare species (Reis et al. 1995).
Only three species abundant in the assemblage studied, the species C. perspicillata and D. rotundus and Myotis sp.. Two of them were also abundant in bat assemblages of other caves in São Paulo state (Trajano 1985, Campanhã & Fowler 1993, Arnone 2008).
Comparing the species composition of the bat assemblage in the granitic cave Gruta do Riacho Subterrâneo with those from caves with different lithologies in São Paulo State, as the calcareous caves of Alto do Ribeira (Trajano 1985, Arnone 2008) and the sandstone caves in the Preservation Area of Corumbataí (Campanhã & Fowler, 1999) it was found that they have very similar composition, although differing in the number of species. The assemblages of 36 caves so far inventoried probably belong to the same regional chiropterofauna, thus suggesting that cave lithology is not a determinant factor for bat assemblages taxonomic structure. One possible explanation for this similarity and also for the relatively high number of bat individuals captured in Gruta do Riacho Suberrâneo could be the fact that all these caves are located in remnants of the Atlantic Rainforest.
Bats from Gruta do Riacho Subterrâneo and its surroundings were classified into five trophic guilds with predominance of the frugivore guild, a fact that is corroborated in other studies that indicate that there is a predominance of this guild in the Neotropical Region (Sipinski & Reis 1995, Ribeiro-Mello 2009, Stevens & Amarilha-Stevens 2012, Bobrowiec et al. 2014, Lourenço et al. 2014). The predominance of frugivorous could, at least in part, be influenced by the sampling method used (mist nets) which is more effective for this guild, but less effective for insectivores due to their more refined echolocation system (Handley 1967, Trajano 1985, Arita 1993, Sipinski & Reis 1995).
Some species were rare being captured only once (Anoura geoffroyi, Micronycteris sp., Chiroderma doriae, Sturnira tildae and Eptesicus diminutus), which could be due to the rarity of the species themselves, which usually tend to form small colonies and also to travel long distances to obtain food (Stevens & Amarilla-Stevens 2011). For instance, Micronycteris sp. live in small groups of six or less individuals (Emmons, 1990). Chiroderma doriae has not been found in the caves in the studies of Trajano (1985) and of Campanhã and Fowler (1999), but it was recorded by Arnone (2008) in Vale do Ribeira caves, who captured only one individual in this study site. It also occurred in small numbers in a semi-deciduous forest in the Ecological Station of Caetetus, São Paulo state (Pedro et al. 2001).
2. Seasonality
The results of multiple linear regression analysis did not show significance for the correlations among abiotic variables and the abundance of bats captured along the year. On contrary, the multivariate canonical analysis showed a significant positive relationship between the relative humidity and bat abundances. In the case of multiple regression, the tested variables are redundant (relative humidty is influenced by pluviosity and air temperature), which probably caused a noise in the analysis. Certainly the pluviosity and air temperature (affecting the relative humidity) influence the bat abundances and the canonical analysis supported this.
Corroborating this idea, we observed that the lowest captures of bats occurred in October 2013 and September 2014, which correspond to the transition period between dry and rainy seasons at the studied site. Bat populations were affected by seasonality, since the greatest bat abundances occurred in the warm and rainy summer months: December 2013 and March 2014, although a high number of bats was also captured in June 2014. The population of Carollia perspicillata, the most abundant species in Gruta do Riacho Subterrâneo cave followed this pattern, also displayed by less abundant species, such as Sturnira lilium and Glossophaga soricina. These species belongs to the frugivorous and nectarivorous trophic guilds, that are directly dependent on flowers and fruit production, which in Atlantic Rainforest and Cerrado have pronounced seasonality (Morellato et al. 2000; Batalha et al. 2004; Marques et al. 2007).
The different pattern observed for Desmodus rotundus, which showed high abundance along all the year (except for the last capture event in September 2014) is probably related to its hematophagous trophic guild, dependent only on the availability of mammals blood (as cattle and horses), its main food source, which is constant throughout the year in the region.
Stevens & Amarilla-Stevens (2011) in a study on bats in the Atlantic Forest in Paraguay found that some species displayed greater population changes in abundance, which were more related with seasonality than others. For example, the species Artibeus lituratus had a decline of more than 30% of its population during the colder season, but other species such as Carollia perspicillata and Artibeus fimbriatus did not show significant population density changes. The pattern observed for the latter species is similar to that of Carollia perspicilata, in which there was no direct relationship between this species abundance and temperature changes. The species A. lituratus was also captured, but its extremely low abundance in Gruta do Riacho Subterrâneo, with only two captures during all study, does not allow inferences regarding seasonality. Also, Ribeiro-Mello (2009) and Ortencio-Filho et al. (2010) showed that changes in temperature throughout the year influences the structure of bat community, and that this can be associated with a change in the feeding sites due to the decrease in food availability in the local area. Similarly, in Gruta do Riacho Subterrâneo cave, the lowest abundances of bats in September 2014 were probably due to the lower food availability, since this was the driest period in this one year sampling.
Another environmental factor that can influence cave bat capture is the moonlight intensity. It was shown by Crespo et al. (1972) in Mexico that Desmodus rotundus, a haematophagous species, and by Morrison (1978, 1980) that some frugivorous species in Panamá, Canal Zone, presented lunar phobia. In the present study there was no relationship between the number of bat captures and the moon light phases.
Conclusion
This study showed that Gruta do Riacho Subterrâneo cave is an important shelter for a rich assemblage of bats, including common and rare species. Althought the climatic variables tested had not shown a significance according to the multiple regression analysis, the changes in population abundances could be due the seasonality in food availability (corroborated by canonical analysis, considering the air relative humidity). The preservation of this cave is important and urgent to the maintenance of bat diversity in general, also contributing to the conservation of the chiropterofauna of São Paulo state.