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PITX2C loss-of-function mutations responsible for idiopathic atrial fibrillation

Abstract

OBJECTIVE:

This study aimed to identify novel PITX2c mutations responsible for idiopathic atrial fibrillation.

METHODS:

A cohort of 210 unrelated patients with idiopathic atrial fibrillation and 200 unrelated, ethnically matched healthy individuals used as controls were recruited. The whole coding exons and splice junctions of the PITX2c gene, which encodes a paired-like homeobox transcription factor required for normal cardiovascular morphogenesis, were sequenced in 210 patients and 200 control subjects. The causative potentials of the identified mutations were automatically predicted by MutationTaster and PolyPhen-2. The functional characteristics of the PITX2c mutations were explored using a dual-luciferase reporter assay system.

RESULTS:

Two novel heterozygous PITX2c mutations (p.Q105L and p.R122C) were identified in 2 of the 210 unrelated patients with idiopathic atrial fibrillation. These missense mutations were absent in the 400 control chromosomes and were both predicted to be pathogenic. Multiple alignments of PITX2c protein sequences across various species showed that the altered amino acids were highly evolutionarily conserved. A functional analysis demonstrated that the mutant PITX2c proteins were both associated with significantly reduced transcriptional activity compared with their wild-type counterparts.

CONCLUSION:

The findings of this study associate PITX2c loss-of-function mutations with atrial fibrillation, supporting the hypothesis that dysfunctional PITX2c confers enhanced susceptibility to atrial fibrillation and suggesting potential implications for early prophylaxis and allele-specific therapy for this common arrhythmia.

Atrial Fibrillation; Transcriptional Factor; PITX2c; Genetics; Reporter Gene


INTRODUCTION

Atrial fibrillation (AF), a supraventricular tachycardia characterized by rapid and chaotic atrial electrical activity with subsequent deterioration of atrial mechanical function, is the most prevalent form of sustained cardiac arrhythmia in humans worldwide and is responsible for approximately one-third of all hospital admissions with miscellaneous heart rhythm disturbances (11. Fuster V, Rydén LE, Cannom DS, Crijns HJ, Curtis AB, Ellenbogen KA, et al. 2011 ACCF/AHA/HRS Focused Updates Incorporated Into the ACC/AHA/ESC 2006 Guidelines for the Management of Patients With Atrial Fibrillation: A Report of the American College of Cardiology Foundation/American Heart Association Task Force on Practice Guidelines. Circulation. 2011;123(10):e269-367, http://dx.doi.org/10.1161/CIR.0b013e318214876d.
http://dx.doi.org/10.1161/CIR.0b013e3182...
). The prevalence of AF is approximately 1% in the general population and increases strikingly with advanced age, increasing from <1% in individuals younger than 60 years to approximately 10% in subjects older than 80 years (11. Fuster V, Rydén LE, Cannom DS, Crijns HJ, Curtis AB, Ellenbogen KA, et al. 2011 ACCF/AHA/HRS Focused Updates Incorporated Into the ACC/AHA/ESC 2006 Guidelines for the Management of Patients With Atrial Fibrillation: A Report of the American College of Cardiology Foundation/American Heart Association Task Force on Practice Guidelines. Circulation. 2011;123(10):e269-367, http://dx.doi.org/10.1161/CIR.0b013e318214876d.
http://dx.doi.org/10.1161/CIR.0b013e3182...
). According to the Framingham Heart Study, the lifetime risk for developing AF is approximately 25% for people older than 40 years (22. Lloyd-Jones DM, Wang TJ, Leip EP, Larson MG, Levy D, Vasan RS, et al. Lifetime risk for development of atrial fibrillation: the Framingham Heart Study. Circulation. 2004;110(9):1042-6, http://dx.doi.org/10.1161/01.CIR.0000140263.20897.42.
http://dx.doi.org/10.1161/01.CIR.0000140...
). The prevalence of AF in the United States is currently estimated at 2.3 million and is projected to exceed 10 million by 2050 (33. Miyasaka Y, Barnes ME, Gersh BJ, Cha SS, Bailey KR, Abhayaratna WP, et al. Secular trends in incidence of atrial fibrillation in Olmsted County, Minnesota, 1980 to 2000, and implications on the projections for future prevalence. Circulation. 2006;114(2):119-25, http://dx.doi.org/10.1161/CIRCULATIONAHA.105.595140.
http://dx.doi.org/10.1161/CIRCULATIONAHA...
). This common arrhythmia significantly contributes to a degraded quality of life, reduced exercise capacity, cognitive impairment or dementia, tachycardiomyopathy, thromboembolism, congestive heart failure, and even death (11. Fuster V, Rydén LE, Cannom DS, Crijns HJ, Curtis AB, Ellenbogen KA, et al. 2011 ACCF/AHA/HRS Focused Updates Incorporated Into the ACC/AHA/ESC 2006 Guidelines for the Management of Patients With Atrial Fibrillation: A Report of the American College of Cardiology Foundation/American Heart Association Task Force on Practice Guidelines. Circulation. 2011;123(10):e269-367, http://dx.doi.org/10.1161/CIR.0b013e318214876d.
http://dx.doi.org/10.1161/CIR.0b013e3182...
,44. Mansur Ade P, Takada JY, Avakian SD, Strunz CM. Warfarin doses for anticoagulation therapy in elderly patients with chronic atrial fibrillation. Clinics. 2012;67(6):543-6, http://dx.doi.org/10.6061/clinics/2012(06)01.
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,55. dos Santos AC, Nobre MR, Nussbacher A, Rodrigues GH, Gebara OC, Azul JB, et al. Predictors of the risk of falls among elderly with chronic atrial fibrillation. Clinics. 2012;67(4):305-11, http://dx.doi.org/10.6061/clinics/2012(04)02.
http://dx.doi.org/10.6061/clinics/2012(0...
). The mortality of patients with AF is approximately twice that of age- and gender-matched patients with normal sinus rhythms, independent of pre-existing cardiovascular conditions (66. Benjamin EJ, Wolf PA, D'Agostino RB, Silbershatz H, Kannel WB, Levy D. Impact of atrial fibrillation on the risk of death: the Framingham Heart Study. Circulation. 1998;98(10):946-52, http://dx.doi.org/10.1161/01.CIR.98.10.946.
http://dx.doi.org/10.1161/01.CIR.98.10.9...
). AF patients have a 2- to 7-fold increased risk for ischemic stroke compared with individuals without AF, and 15%-20% of all strokes are ascribed to AF (77. Wolf PA, Abbott RD, Kannel WB. Atrial fibrillation as an independent risk factor for stroke: the Framingham Study. Stroke. 1991;22(8):983-8, http://dx.doi.org/10.1161/01.STR.22.8.983.
http://dx.doi.org/10.1161/01.STR.22.8.98...
). Note that the risk of thromboembolism attributable to AF also increases markedly with increased age, ranging from 1.5% among patients aged 50-59 years to 23.5% among patients aged 80-89 years (77. Wolf PA, Abbott RD, Kannel WB. Atrial fibrillation as an independent risk factor for stroke: the Framingham Study. Stroke. 1991;22(8):983-8, http://dx.doi.org/10.1161/01.STR.22.8.983.
http://dx.doi.org/10.1161/01.STR.22.8.98...
). Consequently, AF imposes a substantial economic burden on health care systems because of its increased morbidity- and mortality-associated therapeutic interventions. This socioeconomic burden is anticipated to continually increase in the future as life expectancies increase (88. Wolowacz SE, Samuel M, Brennan VK, Jasso-Mosqueda JG, Van Gelder IC. The cost of illness of atrial fibrillation: a systematic review of the recent literature. Europace. 2011;13(10):1375-85, http://dx.doi.org/10.1093/europace/eur194.
http://dx.doi.org/10.1093/europace/eur19...
). Despite its high prevalence and important clinical significance, the molecular basis of AF remains poorly understood.

Frequently, AF is associated with diverse structural heart diseases or systemic disorders, such as ischemic heart disease, valvular heart disease, congenital heart disease, pulmonary heart disease, cardiomyopathy, cardiothoracic surgery, congestive heart failure, essential hypertension, and hyperthyroidism (11. Fuster V, Rydén LE, Cannom DS, Crijns HJ, Curtis AB, Ellenbogen KA, et al. 2011 ACCF/AHA/HRS Focused Updates Incorporated Into the ACC/AHA/ESC 2006 Guidelines for the Management of Patients With Atrial Fibrillation: A Report of the American College of Cardiology Foundation/American Heart Association Task Force on Practice Guidelines. Circulation. 2011;123(10):e269-367, http://dx.doi.org/10.1161/CIR.0b013e318214876d.
http://dx.doi.org/10.1161/CIR.0b013e3182...
,99. Armaganijan L, Lopes RD, Healey JS, Piccini JP, Nair GM, Morillo CA. Do omega-3 fatty acids prevent atrial fibrillation after open heart surgery? A meta-analysis of randomized controlled trials. Clinics. 2011;66(11):1923-8.). Other risk factors for AF include aging, obesity, sleep apnea, cigarette smoking, excessive alcohol consumption, and exposure to drugs or toxicants (11. Fuster V, Rydén LE, Cannom DS, Crijns HJ, Curtis AB, Ellenbogen KA, et al. 2011 ACCF/AHA/HRS Focused Updates Incorporated Into the ACC/AHA/ESC 2006 Guidelines for the Management of Patients With Atrial Fibrillation: A Report of the American College of Cardiology Foundation/American Heart Association Task Force on Practice Guidelines. Circulation. 2011;123(10):e269-367, http://dx.doi.org/10.1161/CIR.0b013e318214876d.
http://dx.doi.org/10.1161/CIR.0b013e3182...
,1010. Saritas A, Kandis H, Baltaci D, Erdem I. Paroxysmal atrial fibrillation and intermittent left bundle branch block: an unusual electrocardiographic presentation of mad honey poisoning. Clinics. 2011;66(9):1651-3, http://dx.doi.org/10.1590/S1807-59322011000900025.
http://dx.doi.org/10.1590/S1807-59322011...
). However, in 12%-30% of all AF patients and 20%-45% of younger AF patients, AF occurs alone in the absence of the above-mentioned underlying diseases or precipitating factors; this condition is defined as idiopathic or lone AF and termed familial AF, as at least 15% of patients have positive family histories of AF (11. Fuster V, Rydén LE, Cannom DS, Crijns HJ, Curtis AB, Ellenbogen KA, et al. 2011 ACCF/AHA/HRS Focused Updates Incorporated Into the ACC/AHA/ESC 2006 Guidelines for the Management of Patients With Atrial Fibrillation: A Report of the American College of Cardiology Foundation/American Heart Association Task Force on Practice Guidelines. Circulation. 2011;123(10):e269-367, http://dx.doi.org/10.1161/CIR.0b013e318214876d.
http://dx.doi.org/10.1161/CIR.0b013e3182...
,1111. Darbar D, Herron KJ, Ballew JD, Jahangir A, Gersh BJ, Shen WK, et al. Familial atrial fibrillation is a genetically heterogeneous disorder. J Am Coll Cardiol. 2003;41(12):2185-92, http://dx.doi.org/10.1016/S0735-1097(03)00465-0.
http://dx.doi.org/10.1016/S0735-1097(03)...
). A growing number of epidemiological studies have demonstrated the familial aggregation of AF and the enhanced susceptibility to AF in the close relatives of AF patients, indicating that genetic risk factors play key roles in the pathogenesis of AF in a subset of patients (1212. Lubitz SA, Yin X, Fontes JD, Magnani JW, Rienstra M, Pai M, et al. Association between familial atrial fibrillation and risk of new-onset atrial fibrillation. JAMA. 2010;304(20):2263-9, http://dx.doi.org/10.1001/jama.2010.1690.
http://dx.doi.org/10.1001/jama.2010.1690...
). A whole-genome scan with polymorphic microsatellite markers and linkage analysis mapped the AF susceptibility loci on human chromosomes 10q22, 6q14-16, 11p15.5, 5p15, 10p11-q21, and 5p13, for which the AF-causing mutations in 2 genes, KCNQ1 on chromosome 11p15.5 and NUP155 on chromosome 5p13, were identified and functionally characterized (1313. Mahida S, Lubitz SA, Rienstra M, Milan DJ, Ellinor PT. Monogenic atrial fibrillation as pathophysiological paradigms. Cardiovasc Res. 2011;89(4):692-700, http://dx.doi.org/10.1093/cvr/cvq381.
http://dx.doi.org/10.1093/cvr/cvq381...
). Analyses of the candidate genes revealed a long list of AF-associated genes, including KCNE2, KCNH2, KCNJ2, KCNA5, SCN5A, ANP, GJA5, GATA4, GATA5, GATA6, and NKX2-5 (1313. Mahida S, Lubitz SA, Rienstra M, Milan DJ, Ellinor PT. Monogenic atrial fibrillation as pathophysiological paradigms. Cardiovasc Res. 2011;89(4):692-700, http://dx.doi.org/10.1093/cvr/cvq381.
http://dx.doi.org/10.1093/cvr/cvq381...

14. Sun Y, Yang YQ, Gong XQ, Wang XH, Li RG, Tan HW, et al. Novel germline GJA5/connexin40 mutations associated with lone atrial fibrillation impair gap junctional intercellular communication. Hum Mutat. 2013;34(4):603-9.

15. Yang YQ, Wang MY, Zhang XL, Tan HW, Shi HF, Jiang WF, et al. GATA4 loss-of-function mutations in familial atrial fibrillation. Clin Chim Acta. 2011;412(19-20):1825-30, http://dx.doi.org/10.1016/j.cca.2011.06.017.
http://dx.doi.org/10.1016/j.cca.2011.06....

16. Wang J, Sun YM, Yang YQ. Mutation spectrum of the GATA4 gene in patients with idiopathic atrial fibrillation. Mol Biol Rep. 2012;39(8):8127-35, http://dx.doi.org/10.1007/s11033-012-1660-6.
http://dx.doi.org/10.1007/s11033-012-166...

17. Yang YQ, Wang J, Wang XH, Wang Q, Tan HW, Zhang M, et al. Mutational spectrum of the GATA5 gene associated with familial atrial fibrillation. Int J Cardiol. 2012;157(2):305-7.

18. Gu JY, Xu JH, Yu H, Yang YQ. Novel GATA5 loss-of-function mutations underlie familial atrial fibrillation. Clinics. 2012;67(12):1393-9, http://dx.doi.org/10.6061/clinics/2012(12)08.
http://dx.doi.org/10.6061/clinics/2012(1...

19. Yang YQ, Wang XH, Tan HW, Jiang WF, Fang WY, Liu X. Prevalence and spectrum of GATA6 mutations associated with familial atrial fibrillation. Int J Cardiol. 2012;155(3):494-6.

20. Yang YQ, Li L, Wang J, Zhang XL, Li RG, Xu YJ, et al. GATA6 loss-of-function mutation in atrial fibrillation. Eur J Med Genet. 2012;55(10):520-6.
-2121. Xie WH, Chang C, Xu YJ, Li RG, Qu XK, Fang WY, et al. Prevalence and spectrum of Nkx2.5 mutations associated with idiopathic atrial fibrillation. Clinics. 2013;68(6):777-784, http://dx.doi.org/10.6061/clinics/2013(06)09.
http://dx.doi.org/10.6061/clinics/2013(0...
). Nevertheless, AF is genetically heterogeneous, and the genetic defects underlying AF in an overwhelming majority of patients remain to be identified.

Recently, a genome-wide association study identified 2 sequence variants (rs2200733 and rs10033464) on chromosome 4q25 that were strongly associated with an enhanced vulnerability for AF (2222. Gudbjartsson DF, Arnar DO, Helgadottir A, Gretarsdottir S, Holm H, Sigurdsson A, et al. Variants conferring risk of atrial fibrillation on chromosome 4q25. Nature. 2007;448(7151):353-7, http://dx.doi.org/10.1038/nature06007.
http://dx.doi.org/10.1038/nature06007...
). This association was subsequently replicated in a study of 4 large populations with ambulatory AF (2323. Kääb S, Darbar D, van Noord C, Dupuis J, Pfeufer A, Newton-Cheh C, et al. Large scale replication and meta-analysis of variants on chromosome 4q25 associated with atrial fibrillation. Eur Heart J. 2009;30(7):813-9.) and was also reported for post-cardiac surgery AF in a setting thought to be related to inflammation (2424. Body SC, Collard CD, Shernan SK, Fox AA, Liu KY, Ritchie MD, et al. Variation in the 4q25 chromosomal locus predicts atrial fibrillation after coronary artery bypass graft surgery. Circ Cardiovasc Genet. 2009;2(5):499-506, http://dx.doi.org/10.1161/CIRCGENETICS.109.849075.
http://dx.doi.org/10.1161/CIRCGENETICS.1...
). Moreover, the 2 sequence variants were observed to increase the risk for both the early and late recurrences of AF after catheter ablation (2525. Husser D, Adams V, Piorkowski C, Hindricks G, Bollmann A. Chromosome 4q25 variants and atrial fibrillation recurrence after catheter ablation. J Am Coll Cardiol. 2010;55(8):747-53, http://dx.doi.org/10.1016/j.jacc.2009.11.041.
http://dx.doi.org/10.1016/j.jacc.2009.11...
) and acted as genetic modifiers of rare ion channel mutations associated with familial AF (2626. Ritchie MD, Rowan S, Kucera G, Stubblefield T, Blair M, Carter S, et al. Chromosome 4q25 variants are genetic modifiers of rare ion channel mutations associated with familial atrial fibrillation. J Am Coll Cardiol. 2012;60(13):1173-81, http://dx.doi.org/10.1016/j.jacc.2012.04.030.
http://dx.doi.org/10.1016/j.jacc.2012.04...
). The PITX2 gene is closest to these sequence variants; it a member of the pituitary homeobox (PITX) family of transcription factors, which play a pivotal role in embryonic morphogenesis. PITX2c is the predominant isoform that is expressed in embryonic and adult hearts (2727. Clauss S, Kääb S. Is Pitx2 growing up? Circ Cardiovasc Genet. 2011;4(2):105-7, http://dx.doi.org/10.1161/CIRCGENETICS.111.959791.
http://dx.doi.org/10.1161/CIRCGENETICS.1...
). Emerging evidence underlines the essential role of PITX2c in the embryonic development of the left atrium, cardiac conduction system, and pulmonary venous myocardium, a major source of ectopic activity that is implicated in initiating and maintaining AF (2828. Douglas YL, Jongbloed MR, Deruiter MC, Gittenberger-de Groot AC. Normal and abnormal development of pulmonary veins: state of the art and correlation with clinical entities. Int J Cardiol. 2011;147(1):13-24.). The abnormal expression of PITX2c has been associated with an increased predisposition to AF (2929. Wang J, Klysik E, Sood S, Johnson RL, Wehrens XH, Martin JF. Pitx2 prevents susceptibility to atrial arrhythmias by inhibiting left-sided pacemaker specification. Proc Natl Acad Sci U S A. 2010;107(21):9753-8, http://dx.doi.org/10.1073/pnas.0912585107.
http://dx.doi.org/10.1073/pnas.091258510...

30. Chinchilla A, Daimi H, Lozano-Velasco E, Dominguez JN, Caballero R, Delpón E, et al. PITX2 insufficiency leads to atrial electrical and structural remodeling linked to arrhythmogenesis. Circ Cardiovasc Genet. 2011;4(3):269-79, http://dx.doi.org/10.1161/CIRCGENETICS.110.958116.
http://dx.doi.org/10.1161/CIRCGENETICS.1...
-3131. Kirchhof P, Kahr PC, Kaese S, Piccini I, Vokshi I, Scheld HH, et al. PITX2c is expressed in the adult left atrium, and reducing Pitx2c expression promotes atrial fibrillation inducibility and complex changes in gene expression. Circ Cardiovasc Genet. 2011;4(2):123-33, http://dx.doi.org/10.1161/CIRCGENETICS.110.958058.
http://dx.doi.org/10.1161/CIRCGENETICS.1...
). These findings justify screening for PITX2c as a prime candidate gene for idiopathic AF.

MATERIALS AND METHODS

Ethics statement

This study was performed in compliance with the ethical principles of the revised Declaration of Helsinki (Somerset West, Republic of South Africa, 1996). The research protocol was reviewed and approved by the local institutional ethics committee, and written informed consent was obtained from all participants prior to the study.

Study subjects

A cohort of 210 unrelated patients with idiopathic AF was recruited from the Han Chinese population. Patients with enlarged left atriums (≥40 mm in left atrial diameter) were excluded. A total of 200 ethnically matched, unrelated healthy individuals were enrolled as the controls. Peripheral venous blood samples were prepared, and clinical data, including medical records, electrocardiogram, and echocardiography reports, were collected. The study subjects were clinically classified using a consistently applied set of definitions (1111. Darbar D, Herron KJ, Ballew JD, Jahangir A, Gersh BJ, Shen WK, et al. Familial atrial fibrillation is a genetically heterogeneous disorder. J Am Coll Cardiol. 2003;41(12):2185-92, http://dx.doi.org/10.1016/S0735-1097(03)00465-0.
http://dx.doi.org/10.1016/S0735-1097(03)...
,1818. Gu JY, Xu JH, Yu H, Yang YQ. Novel GATA5 loss-of-function mutations underlie familial atrial fibrillation. Clinics. 2012;67(12):1393-9, http://dx.doi.org/10.6061/clinics/2012(12)08.
http://dx.doi.org/10.6061/clinics/2012(1...
). Briefly, the AF diagnosis was made using a standard 12-lead electrocardiogram demonstrating no P waves and irregular R-R intervals, regardless of the clinical symptoms. Idiopathic AF was defined as AF occurring in individuals without other cardiac or systemic diseases using a physical examination, electrocardiogram, transthoracic echocardiogram, or extensive laboratory tests. Subjects were classified as ‘healthy' if they were asymptomatic and had normal electrocardiograms. In addition, paroxysmal AF was defined as AF lasting more than 30 seconds that terminated spontaneously. Persistent AF was defined as AF lasting more than 7 days and requiring either pharmacologic therapy or electrical cardioversion for termination. AF that was refractory to cardioversion or that was allowed to continue was classified as long-lasting persistent AF.

Genetic scan

Genomic DNA was extracted from the peripheral venous blood lymphocytes of all participants with a Wizard Genomic DNA Purification Kit (Promega, Madison, WI, USA). The whole coding region and splice junction sites of PITX2c was sequenced in 210 unrelated patients with idiopathic AF, and the genotyping PITX2c in the 200 control individuals was performed subsequently to identify the presence of mutations in the patients. The referential genomic DNA sequence of PITX2c was derived from the GenBank (accession No. NC_000004), which is at the National Center for Biotechnical Information (NCBI, http://www.ncbi.nlm.nih.gov/). The primer pairs used to amplify the coding exons and exon-intron boundaries of PITX2c by polymerase chain reaction (PCR) were designed with the help of the online Primer 3 program (http://frodo.wi.mit.edu), as shown in Table 1. PCR was performed using HotStar Taq DNA Polymerase (Qiagen, Hilden, Germany) on a Veriti Thermal Cycler (Applied Biosystems, Foster City, CA, USA) under standard conditions and concentrations of reagents. Amplified products were analyzed on 1% agarose gels stained with ethidium bromide and purified with QIAquick Gel Extraction Kit (Qiagen). Both strands of each amplicon were sequenced with a BigDye® Terminator v3.1 Cycle Sequencing Kit (Applied Biosystems) under an ABI PRISM 3130 XL DNA Analyzer (Applied Biosystems). The sequencing primers were the same as those previously designed for specific region amplification. The DNA sequences were analyzed with the DNA Sequencing Analysis Software v5.1 (Applied Biosystems). The variant was validated by re-sequencing an independent PCR-generated amplicon from the subject and meeting the quality control thresholds with a call rate >99%. In addition, for an identified sequence variant, the Exome Variant Server (EVS; http://evs.gs.washington.edu/EVS) and NCBI's single nucleotide polymorphism (SNP; http://www.ncbi.nlm.nih.gov/SNP) online databases were searched to confirm its novelty.

Table 1
Primers to amplify the coding exons and exon-intron boundaries of PITX2c.

Alignment of multiple PITX2c protein sequences

Multiple PITX2c protein sequences across various species were aligned using the online program MUSCLE, version 3.6 (http://www.ncbi.nlm.nih.gov/).

Prediction of the disease-causing potential of a PITX2c sequence variation

The disease-causing potential of a PITX2c sequence variation was predicted using MutationTaster (an online program at http://www.mutationtaster.org), which automatically provides a probability for the variation to be either a pathogenic mutation or a benign polymorphism. Note that the p-value used here is the probability of the correct prediction rather than the probability of error, as used in t-test statistics (i.e., a value close to 1 indicates a high accuracy of the prediction). Another online program, PolyPhen-2 (http://genetics.bwh.harvard.edu/pph2), was also used to evaluate the mutational pathogenicity.

Expression plasmids and site-directed mutagenesis

The recombinant expression plasmid PITX2c-pcDNA4, which was constructed by M. Hermina Strungaru et al. (3232. Strungaru MH, Footz T, Liu Y, Berry FB, Belleau P, Semina EV, et al. PITX2 is involved in stress response in cultured human trabecular meshwork cells through regulation of SLC13A3. Invest Ophthalmol Vis Sci. 2011;52(10):7625-33, http://dx.doi.org/10.1167/iovs.10-6967.
http://dx.doi.org/10.1167/iovs.10-6967...
), was a gift from Prof. Georges Christé, Physiopathologie des Troubles du Rythme Cardiaque, Faculté de Pharmacie de Lyon, Université Lyon 1, Lyon, France. The atrial natriuretic factor (ANF)-luciferase reporter plasmid, which contains the 2600-bp 5'-flanking region of the ANF gene, namely ANF (-2600)-Luc, was kindly provided by Dr. Ichiro Shiojima, from the Department of Cardiovascular Science and Medicine, Chiba University Graduate School of Medicine, Chuo-ku, Chiba, Japan. Each of the identified mutations was introduced into the wild-type PITX2c using a QuickChange II XL Site-Directed Mutagenesis Kit (Stratagene, La Jolla, CA, USA) with a complementary pair of primers. The mutants were sequenced to confirm the desired mutations and to exclude any other sequence variations.

Luciferase reporter gene assay

Chinese hamster ovary (CHO) cells were cultured in Dulbecco's modified Eagle's medium supplemented with 10% fetal calf serum, 100 units/ml penicillin, and 100 μg/ml streptomycin. CHO cells were grown 24 h prior to the transfection. The ANF(-2600)-Luc reporter construct and an internal control reporter plasmid pGL4.75 (hRluc/CMV, Promega) were used in transient transfection assays to explore the transactivational activity of the PITX2c mutants. The CHO cells were transfected with 2 μg of wild-type PITX2c-pcDNA4, mutant PITX2c-pcDNA4 (Q105L or R122C), or empty vector pcDNA4, 2.0 μg of ANF(-2600)-Luc reporter construct, and 0.04 μg of pGL4.75 control reporter vector using Lipofectamine 2000 Transfection Reagent (Invitrogen, Carlsbad, CA, USA). For the co-transfection experiments, 1 μg of wild-type PITX2c-pcDNA4, 1 μg of mutant PITX2c-pcDNA4 (Q105L or R122C), 2.0 μg of ANF(-2600)-Luc, and 0.04 μg of pGL4.75 were used. The transfected cells were incubated for 24 h, and then they were lysed and assayed for the reporter activities. Firefly luciferase and Renilla luciferase activities were measured with the Dual-Glo luciferase assay system (Promega). The activity of the ANF promoter was presented as the fold activation of Firefly luciferase relative to the Renilla luciferase. A minimum of three independent experiments were performed for wild-type or mutant PITX2c.

Statistical analysis

The data are expressed as the means±SD. Continuous variables were tested for normality of distribution, and Student′s unpaired t-test was used to compare the numeric variables between 2 groups. The categorical variables were compared between 2 groups using Pearson's chi-squared test or Fisher′s exact test, as appropriate. A 2-sided p-value <0.05 was considered statistically significant.

RESULTS

Clinical characteristics of the study population

A cohort of 210 unrelated patients with idiopathic AF were enlisted, clinically evaluated, and compared with 200 ethnically matched, unrelated healthy individuals. None of the participants had the traditional risk factors for AF. There were no significant differences between the patient and control groups in the baseline characteristics, including age, gender, body mass index, blood pressure, fasting blood glucose, serum lipid, left atrial dimension, left ventricular ejection fraction, heart rate at rest, and lifestyle (data not shown). The baseline clinical characteristics of the 210 patients with idiopathic AF are summarized in Table 2.

Table 2
Baseline clinical characteristics of the study subjects.* *There were no significant differences in the baseline characteristics between the patient and control groups.

PITX2c mutations

Two heterozygous missense mutations in PITX2c were identified in 2 of the 210 unrelated patients with idiopathic AF. The total population prevalence of PITX2c mutations based on the patient cohort was approximately 0.95%. Specifically, a substitution of thymine (T) for adenine (A) in the second nucleotide of codon 105 (c.314A>T), which predicted the transition of glutamine (Q) into leucine (L) at amino acid 105 (p.Q105L), was identified in a 52-year-old female patient who was initially diagnosed with AF at the age of 35 years. A change of cytosine (C) into thymine (T) in the first nucleotide of codon 122 (c.364C>T), corresponding to the transversion of arginine (R) into cysteine (C) at amino acid 122 (p.R122C), was found in a 48-year-old male patient who was first diagnosed with AF at the age of 21 years. The 2 mutation carriers had no apparent malformations in the eyes, teeth, umbilicus, or heart and had no positive family history. No relatives from these 2 mutation carriers were available for PITX2c genotyping. The sequence chromatograms showing the detected heterozygous PITX2c mutations of c.314A>T and c.364C>T in contrast to their control sequences are shown in Figures 1A and 1B, respectively. A schematic diagram of PITX2c showing the structural domains and the locations of the identified mutations is presented in Figure 2 (3333. Footz T, Idrees F, Acharya M, Kozlowski K, Walter MA. Analysis of mutations of the PITX2 transcription factor found in patients with Axenfeld-Rieger syndrome. Invest Ophthalmol Vis Sci. 2009;50(6):2599-606, http://dx.doi.org/10.1167/iovs.08-3251.
http://dx.doi.org/10.1167/iovs.08-3251...
,3434. Acharya M, Lingenfelter DJ, Huang L, Gage PJ, Walter MA. Human PRKC apoptosis WT1 regulator is a novel PITX2-interacting protein that regulates PITX2 transcriptional activity in ocular cells. J Biol Chem. 2009;284(50):34829-38, http://dx.doi.org/10.1074/jbc.M109.006684.
http://dx.doi.org/10.1074/jbc.M109.00668...
). These missense mutations were neither observed in the control population nor reported in the EVS and NCBI SNP databases.

Figure 1
Sequence electropherograms showing the PITX2c mutations in contrast with their corresponding controls. The arrows indicate the heterozygous nucleotides of A/T (Figure 1A, mutant) or C/T (Figure 1B, mutant) or the homozygous nucleotides of A/A (Figure 1A, wild-type) or C/C (Figure 1B, wild-type). The rectangle designates the nucleotides comprising a codon of PITX2c.
Figure 2
A schematic representation of the PITX2c protein structure with the atrial fibrillation-related mutations indicated. The mutations identified in patients with atrial fibrillation are shown above the structural domains. NH2 means amino-terminus; TAD1, transcriptional activation domain 1 (amino acids 1-91); HD, homeodomain (amino acids 92-151); NLS, nuclear localization signal (amino acids 145-161); TID1, transcriptional inhibitory domain 1 (amino acids 162-212); TAD2, transcriptional activation domain 2 (amino acids 213-285); TID2, transcriptional inhibitory domain 2 (amino acids 286-324); and COOH, carboxyl-terminus.

Alignments of multiple PITX2c protein sequences across species

The alignment of PITX2c protein sequences across 11 species ranging from humans to mammals and insects showed that the altered amino acid residues were completely (for p.R122) or highly (for p.Q105) evolutionarily conserved among PITX2c orthologs, which suggested that these particular arginine and glutamine residues in the homeodomain of PITX2c are functionally important (Figure 3).

Figure 3
Alignment of the multiple PITX2c protein sequences across species. The altered amino acids of p.Q105 and p.R122 are highly evolutionarily conserved among the various species.

Disease-causing potential of the PITX2c variations

The PITX2c sequence variations of c.314A>T and c.364C>T were both automatically predicted by MutationTaster to be disease-causing mutations with the same p-value of 1.0. No SNP in the altered regions was found in the MutationTaster database. The 2 PITX2c sequence variations were also predicted by PolyPhen-2 to most likely be damaging, with scores of 0.999 for c.314A>T (sensitivity 0.14; specificity 0.99) and 1.000 for c.364C>T (sensitivity 0.00, specificity 1.00).

Transcriptional activity of the PITX2c mutants

The same amounts of wild-type (2 μg), Q105L-mutant (2 μg), and R122C-mutant PITX2c (2 μg) activated the ANF promoter by ∼9-fold, ∼3-fold, and ∼2-fold increases, respectively, compared with the empty plasmid. When the same amount of wild-type PITX2c (1 μg) was cotransfected with Q105L-mutant PITX2c (1 μg) or R122C-mutant PITX2c (1 μg), the induced activation of the ANF promoter was a ∼5-fold increase, compared with the empty plasmid (Figure 4).

Figure 4
The functional defects associated with the PITX2c mutations. The activation of an atrial natriuretic factor (ANF) promoter-driven luciferase reporter in the CHO cells by PITX2c wild-type (WT), Q105L-mutant, or R122C-mutant, alone or in combination, demonstrated a significantly decreased transactivational activity by the mutant proteins. The experiments were performed in triplicate, and the means and standard deviations are shown. ** indicates p<0.001 and * denotes p<0.01, when compared with the same amount (2 μg) of wild-type PITX2c.

DISCUSSION

In the present study, 2 novel heterozygous PITX2c mutations, p.Q105L and p.R122C, were identified in 2 unrelated patients with idiopathic AF; these mutations were absent in the 400 reference chromosomes and were both predicted to be pathogenic by MutationTaster and PolyPhen-2. A cross-species alignment of PITX2c protein sequences showed that the altered amino acids are highly evolutionarily conserved. The functional analysis demonstrated that the mutant PITX2c proteins are associated with significantly decreased transcriptional activity. Therefore, it is likely that having functionally impaired PITX2c predisposes a patient to AF.

PITX2 is expressed as several protein isoforms, which are generated by differential mRNA splicing and alternative translation initiation sites. In the human and the mouse, the transcriptionally functional isoforms are PITX2-a, -b, and -c, which share an identical homeodomain and carboxyl terminus but differ in their amino termini. Humans possess an additional isoform, the D isoform, which lacks the amino-terminal domain and most of the homeodomain (3131. Kirchhof P, Kahr PC, Kaese S, Piccini I, Vokshi I, Scheld HH, et al. PITX2c is expressed in the adult left atrium, and reducing Pitx2c expression promotes atrial fibrillation inducibility and complex changes in gene expression. Circ Cardiovasc Genet. 2011;4(2):123-33, http://dx.doi.org/10.1161/CIRCGENETICS.110.958058.
http://dx.doi.org/10.1161/CIRCGENETICS.1...
). PITX2c is the major isoform that is expressed asymmetrically in the developing and adult heart and plays a crucial role in normal cardiovascular genesis and maturation (3030. Chinchilla A, Daimi H, Lozano-Velasco E, Dominguez JN, Caballero R, Delpón E, et al. PITX2 insufficiency leads to atrial electrical and structural remodeling linked to arrhythmogenesis. Circ Cardiovasc Genet. 2011;4(3):269-79, http://dx.doi.org/10.1161/CIRCGENETICS.110.958116.
http://dx.doi.org/10.1161/CIRCGENETICS.1...
,3131. Kirchhof P, Kahr PC, Kaese S, Piccini I, Vokshi I, Scheld HH, et al. PITX2c is expressed in the adult left atrium, and reducing Pitx2c expression promotes atrial fibrillation inducibility and complex changes in gene expression. Circ Cardiovasc Genet. 2011;4(2):123-33, http://dx.doi.org/10.1161/CIRCGENETICS.110.958058.
http://dx.doi.org/10.1161/CIRCGENETICS.1...
). The human PITX2c gene maps to chromosome 4q25, which consists of 3 exons coding for a protein of 324 amino acids (3535. Semina EV, Reiter R, Leysens NJ, Alward WL, Small KW, Datson NA, et al. Cloning and characterization of a novel bicoid-related homeobox transcription factor gene, RIEG, involved in Rieger syndrome. Nat Genet. 1996;14(4):392-9, http://dx.doi.org/10.1038/ng1296-392.
http://dx.doi.org/10.1038/ng1296-392...
). One of the most important functional domains of PITX2c is the homeodomain that recognizes and binds to the specific consensus DNA sequence 5′-TAATCC-3′. This homeodomain is essential for DNA binding, nuclear translocation, and interaction with other transcription factors (3535. Semina EV, Reiter R, Leysens NJ, Alward WL, Small KW, Datson NA, et al. Cloning and characterization of a novel bicoid-related homeobox transcription factor gene, RIEG, involved in Rieger syndrome. Nat Genet. 1996;14(4):392-9, http://dx.doi.org/10.1038/ng1296-392.
http://dx.doi.org/10.1038/ng1296-392...
). The PITX2c mutations of p.Q105L and p.R122C, which are identified in the present study, are both located in this homeodomain; thus, they may be expected to influence the transcriptional activity of PITX2c by interfering with its DNA-binding ability.

Previous studies have corroborated that PITX2c is an upstream regulator of multiple target genes that are expressed in the heart during embryogenesis, including the gene that encodes ANF (3636. Ganga M, Espinoza HM, Cox CJ, Morton L, Hjalt TA, Lee Y, et al. PITX2 isoform-specific regulation of atrial natriuretic factor expression: synergism and repression with Nkx2.5. J Biol Chem. 2003;278(25):22437-45, http://dx.doi.org/10.1074/jbc.M210163200.
http://dx.doi.org/10.1074/jbc.M210163200...
). Therefore, the functional role of a PITX2c mutation can be characterized by an assay of the transcriptional activity of the ANF promoter in the cells expressing PITX2c mutants, in contrast to the wild-type counterpart. In this study, the functional characteristics of the 2 novel PITX2c mutations identified in the AF patients were delineated by a transcriptional activity analysis, the results of which showed that both mutations were associated with a significantly reduced transcriptional activity on a downstream gene. This result suggests that the dysfunctional PITX2c resulting from mutations is potentially an alternative pathological mechanism in AF.

The finding that functionally impaired PITX2c contributes to AF may be partially attributed to the abnormal development of cardiovascular system, especially pulmonary venous myocardium (3737. Mommersteeg MT, Brown NA, Prall OW, de Gier-de Vries C, Harvey RP, Moorman AF, et al. Pitx2c and Nkx2-5 are required for the formation and identity of the pulmonary myocardium. Circ Res. 2007;101(9):902-9, http://dx.doi.org/10.1161/CIRCRESAHA.107.161182.
http://dx.doi.org/10.1161/CIRCRESAHA.107...
,3838. Mommersteeg MT, Christoffels VM, Anderson RH, Moorman AF. Atrial fibrillation: a developmental point of view. Heart Rhythm. 2009;6(12):1818-24, http://dx.doi.org/10.1016/j.hrthm.2009.07.011.
http://dx.doi.org/10.1016/j.hrthm.2009.0...
). PITX2c is abundantly expressed in the atria and pulmonary myocardium, downregulating the sinoatrial nodal gene program, for example, Shox2, HCN4 and Cav3.1, and upregulating a gene program characteristic of a working myocardium phenotype, for example, Nkx2.5, Cx40, Cx43, ANP, and Kir2.1 (2727. Clauss S, Kääb S. Is Pitx2 growing up? Circ Cardiovasc Genet. 2011;4(2):105-7, http://dx.doi.org/10.1161/CIRCGENETICS.111.959791.
http://dx.doi.org/10.1161/CIRCGENETICS.1...
,2929. Wang J, Klysik E, Sood S, Johnson RL, Wehrens XH, Martin JF. Pitx2 prevents susceptibility to atrial arrhythmias by inhibiting left-sided pacemaker specification. Proc Natl Acad Sci U S A. 2010;107(21):9753-8, http://dx.doi.org/10.1073/pnas.0912585107.
http://dx.doi.org/10.1073/pnas.091258510...
,3131. Kirchhof P, Kahr PC, Kaese S, Piccini I, Vokshi I, Scheld HH, et al. PITX2c is expressed in the adult left atrium, and reducing Pitx2c expression promotes atrial fibrillation inducibility and complex changes in gene expression. Circ Cardiovasc Genet. 2011;4(2):123-33, http://dx.doi.org/10.1161/CIRCGENETICS.110.958058.
http://dx.doi.org/10.1161/CIRCGENETICS.1...
,3737. Mommersteeg MT, Brown NA, Prall OW, de Gier-de Vries C, Harvey RP, Moorman AF, et al. Pitx2c and Nkx2-5 are required for the formation and identity of the pulmonary myocardium. Circ Res. 2007;101(9):902-9, http://dx.doi.org/10.1161/CIRCRESAHA.107.161182.
http://dx.doi.org/10.1161/CIRCRESAHA.107...
). Therefore, PITX2c loss-of-function mutations presumably predispose a patient to AF by inducing the identity switch of the atrial and pulmonary myocardium to a sinoatrial node-like phenotype, thereby forming an electrophysiological substrate that favors AF. Another equally compelling explanation is that dysfunctional PITX2c may change the expression profile of ion channels in the atrium, including an increased expression of the potassium-channel gene KCNQ1, which alters atrial repolarization, as suggested by the gene expression analysis and functional studies in PITX2-deficient mice (2929. Wang J, Klysik E, Sood S, Johnson RL, Wehrens XH, Martin JF. Pitx2 prevents susceptibility to atrial arrhythmias by inhibiting left-sided pacemaker specification. Proc Natl Acad Sci U S A. 2010;107(21):9753-8, http://dx.doi.org/10.1073/pnas.0912585107.
http://dx.doi.org/10.1073/pnas.091258510...
,3131. Kirchhof P, Kahr PC, Kaese S, Piccini I, Vokshi I, Scheld HH, et al. PITX2c is expressed in the adult left atrium, and reducing Pitx2c expression promotes atrial fibrillation inducibility and complex changes in gene expression. Circ Cardiovasc Genet. 2011;4(2):123-33, http://dx.doi.org/10.1161/CIRCGENETICS.110.958058.
http://dx.doi.org/10.1161/CIRCGENETICS.1...
,3939. Kahr PC, Piccini I, Fabritz L, Greber B, Schöler H, Scheld HH, et al. Systematic analysis of gene expression differences between left and right atria in different mouse strains and in human atrial tissue. PLoS One. 2011;6(10):e26389, http://dx.doi.org/10.1371/journal.pone.0026389.
http://dx.doi.org/10.1371/journal.pone.0...
).

It has been shown that some downstream genes are transactivated by PITX2c (2727. Clauss S, Kääb S. Is Pitx2 growing up? Circ Cardiovasc Genet. 2011;4(2):105-7, http://dx.doi.org/10.1161/CIRCGENETICS.111.959791.
http://dx.doi.org/10.1161/CIRCGENETICS.1...
), and mutations in multiple target genes, including Nkx2.5, Cx40, Cx43, and ANP, have been causally implicated in AF (1414. Sun Y, Yang YQ, Gong XQ, Wang XH, Li RG, Tan HW, et al. Novel germline GJA5/connexin40 mutations associated with lone atrial fibrillation impair gap junctional intercellular communication. Hum Mutat. 2013;34(4):603-9.,2121. Xie WH, Chang C, Xu YJ, Li RG, Qu XK, Fang WY, et al. Prevalence and spectrum of Nkx2.5 mutations associated with idiopathic atrial fibrillation. Clinics. 2013;68(6):777-784, http://dx.doi.org/10.6061/clinics/2013(06)09.
http://dx.doi.org/10.6061/clinics/2013(0...
,4040. Gollob MH, Jones DL, Krahn AD, Danis L, Gong XQ, Shao Q, et al. Somatic mutations in the connexin 40 gene (GJA5) in atrial fibrillation. N Engl J Med. 2006;354(25):2677-88.

41. Thibodeau IL, Xu J, Li Q, Liu G, Lam K, Veinot JP, et al. Paradigm of genetic mosaicism and lone atrial fibrillation: physiological characterization of a connexin 43-deletion mutant identified from atrial tissue. Circulation. 2010;122(3):236-44, http://dx.doi.org/10.1161/CIRCULATIONAHA.110.961227.
http://dx.doi.org/10.1161/CIRCULATIONAHA...
-4242. Hodgson-Zingman DM, Karst ML, Zingman LV, Heublein DM, Darbar D, Herron KJ, et al. Atrial natriuretic peptide frameshift mutation in familial atrial fibrillation. N Engl J Med. 2008;359(2):158-65.). This result implies that mutated PITX2c may confer vulnerability to AF by downregulating the expressions of these target genes. Therefore, additional experiments investigating whether PITX2c mutations can modify the expression levels of some of the genes involved in the AF pathogenesis are still required.

Notably, PITX2 mutations were previously implicated in type 1 Axenfeld-Rieger syndrome, type 2 iridogoniodysgenesis, Peters' anomaly, ring dermoid of cornea, and congenital cardiac malformation (3333. Footz T, Idrees F, Acharya M, Kozlowski K, Walter MA. Analysis of mutations of the PITX2 transcription factor found in patients with Axenfeld-Rieger syndrome. Invest Ophthalmol Vis Sci. 2009;50(6):2599-606, http://dx.doi.org/10.1167/iovs.08-3251.
http://dx.doi.org/10.1167/iovs.08-3251...
,4343. Xia K, Wu L, Liu X, Xi X, Liang D, Zheng D, et al. Mutation in PITX2 is associated with ring dermoid of the cornea. J Med Genet. 2004;41(12):e129, http://dx.doi.org/10.1136/jmg.2004.022434.
http://dx.doi.org/10.1136/jmg.2004.02243...

44. Doward W, Perveen R, Lloyd IC, Ridgway AE, Wilson L, Black GC. A mutation in the RIEG1 gene associated with Peters' anomaly. J Med Genet. 1999;36(2):152-5.
-4545. Zaidi S, Choi M, Wakimoto H, Ma L, Jiang J, Overton JD, et al. De novo mutations in histone-modifying genes in congenital heart disease. Nature. 2013;498(7453):220-3, http://dx.doi.org/10.1038/nature12141.
http://dx.doi.org/10.1038/nature12141...
). In this study, the mutations identified in the AF patients were in the homeodomain shared by PITX2a, PITX2b, and PITX2c, which implies that mutated PITX2 may also be responsible for AF.

In addition, Yang et al. (4646. Yang YQ, Xu YJ, Li RG, Qu XK, Fang WY, Liu X. Prevalence and spectrum of PITX2c mutations associated with familial atrial fibrillation. Int J Cardiol. 2013;pii:S0167-5273(13)00579-2.) previously screened 152 index patients with familial AF who were enlisted from the Han Chinese population. They identified 2 novel heterozygous PITX2c mutations, including c.110C>G, corresponding to p.S37W, and c.840 T>A, which resulted in p.Y280X in 2 of the 152 AF probands, with a mutational prevalence of approximately 1.32%. The authors' analysis of the pedigrees showed that each mutation that co-segregated with AF was transmitted in an autosomal dominant manner in the family, with complete penetrance. However, the functional characteristics of the PITX2 mutations associated with familial AF remain to be addressed.

In conclusion, this study links PITX2c loss-of-function mutations to AF for the first time, provides evidence that functionally impaired PITX2c is associated with an increased vulnerability to AF, and identifies the potential implications for early prophylaxis and allele-specific therapies for this common arrhythmia.

We thank the study participants for their devotion to the study. This work was partially supported by grants from the National Natural Science Fund of China (81070153, 81270161 and 30570768), the National Basic Research Program of China (2010CB912604), and the Personnel Development Foundation of Shanghai, China (2010019).

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Publication Dates

  • Publication in this collection
    Jan 2014

History

  • Received
    19 May 2013
  • Reviewed
    10 June 2013
  • Accepted
    10 July 2013
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