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DNA barcoding of a tropical anguillid eel, Anguilla bicolor (Actinopterygii: Anguilliformes), in Indo-Pacific region and notes on its population structure

ABSTRACT

The tropical anguillid eel, Anguilla bicolor McCelland, 1844, includes two subspecies, Anguilla bicolor bicolor McCelland, 1844 and Anguilla bicolor pacifica Schmidt, 1928, and is distributed across the Indo-Pacific region. Although A. bicolor is widely distributed and recognized as an important fish resource in the Indo-Pacific region, few studies have been conducted on its genetic variation and population structure. DNA barcoding of A. bicolor specimens collected in the Indo-Pacific region was carried out in this study using mitochondrial cytochrome c oxidase subunit I. Anguilla bicolor was found to diverge genetically, which supported its classification into two different subspecies. In addition, our study showed that A. bicolor bicolor had two genetically distinct populations/groups, and these different populations co-occur geographically in Indonesia and Malaysia in the eastern Indian Ocean. Our findings suggest that the eel larvae might be transported from at least two geographically different spawning grounds in the Indian Ocean, and then recruited to and settled in the same habitats in Indonesian and Malaysian waters. The molecular evidence calls for further research on the life history, stock assessment and protection of the populations of A. bicolor bicolor in Indonesia and Malaysia.

KEY WORDS:
Anguillid eel; haplotype network; molecular phylogeny; tropical species

Sixteen species of the genus Anguilla Schrank, 1798 are widely distributed across the world. Eleven species are found in tropical Indo-Pacific regions (Ege 1939Ege V (1939) A revision of the genus Anguilla Shaw. Dana Report 16: 8-256., Arai 2016Arai T (2016) Taxonomy and distribution. In: Arai T (Ed.) Biology and ecology of anguillid eels. Boca Raton, CRC Press, 1-20., 2020Arai T (2020) Ecology and evolution of migration in the freshwater eels of the genus Anguilla Schrank, 1798. Heliyon 6: e05176. https://doi.org/10.1016/j.heliyon.2020.e05176
https://doi.org/10.1016/j.heliyon.2020.e...
). Of the eleven species, six species, i.e., Anguilla marmorata Quoy & Gaimard, 1824, Anguilla bengalensis Gray, 1831, Anguilla celebesensis Kaup, 1856, Anguilla borneensis Popta, 1924, Anguilla interioris Whitley, 1938, and Anguilla bicolor McCelland, 1844, are distributed in the tropical waters of Indonesia and Malaysia. Anguillid eels have a catadromous life history, migrating between offshore spawning grounds and freshwater growth habitats (Arai 2020Arai T (2020) Ecology and evolution of migration in the freshwater eels of the genus Anguilla Schrank, 1798. Heliyon 6: e05176. https://doi.org/10.1016/j.heliyon.2020.e05176
https://doi.org/10.1016/j.heliyon.2020.e...
). Many tropical anguillid species share similar geographic distributions and spawning grounds (Tesch 2003Tesch FW (2003).The eel. Blackwell Publishing, London, 3rd ed., 408 pp.), which raises the question of whether the different species hybridize naturally.

The short-finned tropical eel, A. bicolor, is distributed globally across the Indo-Pacific region, from East Africa to Papua New Guinea, and the Philippines through Indonesia (Ege 1939Ege V (1939) A revision of the genus Anguilla Shaw. Dana Report 16: 8-256.). Due to the wide geographical distribution, offshore spawning migration, passive larval transportation and the absence of significant physical barriers in the Indo-Pacific Ocean, a weak or an absence of population structure was expected for A. bicolor (Minegishi et al. 2012Minegishi Y, Gagnaire PA, Aoyama J, Bosc P, Feunteun E, Tsukamoto K, Berrebi P (2012) Present and past genetic connectivity of the Indo-Pacific tropical eel Anguilla bicolor. Journal of Biogeography 39: 408-420. https://doi.org/10.1111/j.1365-2699.2011.02603.x
https://doi.org/10.1111/j.1365-2699.2011...
, Fahmi et al. 2015Fahmi MR, Solihin DD, Shao Z, Pouyaud L, Berrebi P (2015) Population genetic structure of the tropical eel Anguilla bicolor in Indonesian waters based on microsatellite markers. Journal of Vertebrate Biology 64: 87-96. https://doi.org/10.25225/fozo.v64.i2.a1.2015
https://doi.org/10.25225/fozo.v64.i2.a1....
), as observed in temperate species such as Anguilla anguilla Linnaeus, 1758 (Palm et al. 2009Palm S, Dannewitz J, Prestegaard T, Wickström H (2009) Panmixia in European eel revisited: no genetic difference between maturing adults from southern and northern Europe. Heredity 103:82-89. https://doi.org/10.1038/hdy.2009.51
https://doi.org/10.1038/hdy.2009.51...
) and Anguilla japonica Temminck & Schlegel, 1846 (Han et al. 2008Han YS, Sun YL, Liao YF, Shen KN, Liao IC, Tzeng WN (2008) Temporal analysis of population genetic composition in the overexploited Japanese eel Anguilla japonica. Marine Biology 155: 613-621. https://doi.org/10.1007/s00227-008-1057-1
https://doi.org/10.1007/s00227-008-1057-...
). However, based on its allopatric distribution and slight differences in morphological characteristics, A. bicolor has been subdivided into A. bicolor bicolor (Indian Ocean) and A. bicolor pacifica (western Pacific Ocean) (Ege 1939Ege V (1939) A revision of the genus Anguilla Shaw. Dana Report 16: 8-256., Watanabe et al. 2014Watanabe S, Miller MJ, Aoyama J, Tsukamoto K (2014) Evaluation of the population structure of Anguilla bicolor and A. bengalensis using total number of vertebrae and consideration of the subspecies concept for the genus Anguilla. Ecology of Freshwater Fish 23: 77-85. https://doi.org/10.1111/eff.12076
https://doi.org/10.1111/eff.12076...
).

Anguilla bicolor was previously sampled across its entire geographic range and analyzed using microsatellites and mitochondrial control region sequences (Minegishi et al. 2012Minegishi Y, Gagnaire PA, Aoyama J, Bosc P, Feunteun E, Tsukamoto K, Berrebi P (2012) Present and past genetic connectivity of the Indo-Pacific tropical eel Anguilla bicolor. Journal of Biogeography 39: 408-420. https://doi.org/10.1111/j.1365-2699.2011.02603.x
https://doi.org/10.1111/j.1365-2699.2011...
). They found that A. bicolor was divided into (i) a homogeneous eastern and western side of the Indian Ocean (A. bicolor bicolor), and (ii) a western side of the Pacific Ocean (A. bicolor pacifica). Analysis of mitochondrial cytochrome b sequences and microsatellite markers further confirmed the differentiation into two subspecies with the microsatellite loci, suggesting a moderate differentiation between the subspecies (Fahmi et al. 2015Fahmi MR, Solihin DD, Shao Z, Pouyaud L, Berrebi P (2015) Population genetic structure of the tropical eel Anguilla bicolor in Indonesian waters based on microsatellite markers. Journal of Vertebrate Biology 64: 87-96. https://doi.org/10.25225/fozo.v64.i2.a1.2015
https://doi.org/10.25225/fozo.v64.i2.a1....
). Although A. bicolor bicolor in the Indian Ocean was found to have two mitochondrial sublineages with random occurrence among and within sampling locations (Minegishi et al. 2012Minegishi Y, Gagnaire PA, Aoyama J, Bosc P, Feunteun E, Tsukamoto K, Berrebi P (2012) Present and past genetic connectivity of the Indo-Pacific tropical eel Anguilla bicolor. Journal of Biogeography 39: 408-420. https://doi.org/10.1111/j.1365-2699.2011.02603.x
https://doi.org/10.1111/j.1365-2699.2011...
, Fahmi et al. 2015Fahmi MR, Solihin DD, Shao Z, Pouyaud L, Berrebi P (2015) Population genetic structure of the tropical eel Anguilla bicolor in Indonesian waters based on microsatellite markers. Journal of Vertebrate Biology 64: 87-96. https://doi.org/10.25225/fozo.v64.i2.a1.2015
https://doi.org/10.25225/fozo.v64.i2.a1....
), little work has been done on the population structure of A. bicolor bicolor in the Indian Ocean.

Knowledge on the life history of A. bicolor has been gradually accumulating (e.g., Arai et al. 1999aArai T, Limbong D, Otake T, Tsukamoto K (1999a) Metamorphosis and inshore migration of tropical eels Anguilla spp. in the Indo-Pacific. Marine Ecology Progress Series 182: 283-293. https://doi.org/10.3354/meps182283
https://doi.org/10.3354/meps182283...
, 1999bArai T, Otake T, Limbong D, Tsukamoto K (1999b) Early life history and recruitment of the tropical eel Anguilla bicolor pacifica, as revealed by otolith microstructure and microchemistry. Marine Biology 133: 319-326. https://doi.org/10.1007/s002270050470
https://doi.org/10.1007/s002270050470...
, 2020Arai T, Chai IJ, Iizuka Y, Chang CW (2020) Habitat segregation and migration in tropical anguillid eels, Anguilla bengalensis bengalensis and A. bicolor bicolor. Scientific Reports 10: 16890. https://doi.org/10.1038/s41598-020-72788-9
https://doi.org/10.1038/s41598-020-72788...
, Robinet et al. 2003Robinet T, Lecomte-Finiger R, Escoubeyrou K, Feunteun E (2003) Tropical eels Anguilla spp. recruiting to Reunion Island in the Indian Oceans: taxonomy, patterns of recruitment and early life histories. Marine Ecology Progress Series 259: 263-272. https://doi.org/10.3354/meps259263
https://doi.org/10.3354/meps259263...
, Arai and Chino 2013Arai T, Chino N (2013) Timing of maturation of a tropical eel, Anguilla bicolor bicolor in Malaysia. Journal of Applied Ichthyology 29: 271-273. https://doi.org/10.1111/jai.12040
https://doi.org/10.1111/jai.12040...
, 2019Arai T, Chino N (2019) Variations in the migratory history of the tropical catadromous eels Anguilla bicolor bicolor and A. bicolor pacifica in south-east Asian waters. Journal of Fish Biology 94: 752-758. https://doi.org/10.1111/jfb.13952
https://doi.org/10.1111/jfb.13952...
, Arai and Abdul Kadir 2017aArai T, Abdul Kadir SR (2017a) Opportunistic spawning of tropical anguillid eels Anguilla bicolor bicolor and A. bengalensis bengalensis. Scientific Reports 7: 41649. https://doi.org/10.1038/srep41649
https://doi.org/10.1038/srep41649...
, 2017bArai T, Abdul Kadir SR (2017b) Diversity, distribution and different habitat use among the tropical freshwater eels of genus Anguilla. Scientific Reports 7: 7593. https://doi.org/10.1038/s41598-017-07837-x
https://doi.org/10.1038/s41598-017-07837...
, Chai and Arai 2018Chai IJ, Arai T (2018) Ages at maturation of tropical freshwater eels, Anguilla bicolor bicolor and A. bengalensis bengalensis. Journal of Applied Animal Research 46: 1108-1113. https://doi.org/10.1080/09712119.2018.1470090
https://doi.org/10.1080/09712119.2018.14...
, Arai et al. 2020Arai T, Chai IJ, Iizuka Y, Chang CW (2020) Habitat segregation and migration in tropical anguillid eels, Anguilla bengalensis bengalensis and A. bicolor bicolor. Scientific Reports 10: 16890. https://doi.org/10.1038/s41598-020-72788-9
https://doi.org/10.1038/s41598-020-72788...
). Hatching and recruitment are estimated to be almost year-round and at a constant age, respectively (Arai et al. 2001Arai T, Limbong D, Otake T, Tsukamoto K (2001) Recruitment mechanisms of tropical eels, Anguilla spp., and implications for the evolution of oceanic migration in the genus Anguilla. Marine Ecology Progress Series 216: 253-264. https://doi.org/10.3354/meps216253
https://doi.org/10.3354/meps216253...
). Tropical glass eels are recruited to a river mouth throughout the year (Arai et al. 1999cArai T, Aoyama J, Limbong D, Tsukamoto K (1999c) Species composition and inshore migration of the tropical eels Anguilla spp. recruiting to the estuary of the Poigar River, Sulawesi Island. Marine Ecology Progress Series 188: 299-303. https://doi.org/10.3354/meps188299
https://doi.org/10.3354/meps188299...
, Sugeha et al. 2001Sugeha HY, Arai T, Miller MJ, Limbong D, Tsukamoto K (2001) Inshore migration of the tropical eels Anguilla spp. Recruiting to the Poigar River estuary on North Sulawesi Island. Marine Ecology Progress Series 221: 233-243. https://doi.org/10.3354/meps2212
https://doi.org/10.3354/meps2212...
), which corresponds to a year-round spawning (Arai et al. 2016Arai T, Abdul Kadir SR, Chino N (2016) Year-round spawning by a tropical catadromous eel Anguilla bicolor bicolor. Marine Biology 163: 37. https://doi.org/10.1007/s00227-015-2792-8
https://doi.org/10.1007/s00227-015-2792-...
, Arai and Abdul Kadir 2017aArai T, Abdul Kadir SR (2017a) Opportunistic spawning of tropical anguillid eels Anguilla bicolor bicolor and A. bengalensis bengalensis. Scientific Reports 7: 41649. https://doi.org/10.1038/srep41649
https://doi.org/10.1038/srep41649...
). In contrast, temperate eels do not show year-round spawning and recruitment. The broad ranges of otolith strontium/calcium (Sr:Ca) ratios found in A. bicolor bicolor and A. bicolor pacifica suggest that these subspecies have flexible migratory behaviors in ambient waters (Chino and Arai 2010aChino N, Arai T (2010a) Occurrence of marine resident tropical eel Anguilla bicolor bicolor in Indonesia. Marine Biology 157: 1075-1081. https://doi.org/10.1007/s00227-009-1388-6
https://doi.org/10.1007/s00227-009-1388-...
, 2010bChino N, Arai T (2010b) Habitat use and habitat transitions in the tropical eel, Anguilla bicolor bicolor. Environmental Biology of Fishes 89: 571-578. https://doi.org/10.1007/s10641-010-9677-y
https://doi.org/10.1007/s10641-010-9677-...
, Arai et al. 2013Arai T, Chino N, Le DQ (2013) Migration and habitat use of the tropical eels Anguilla marmorata and A. bicolor pacifica in Vietnam. Aquatic Ecology 47: 57-65. https://doi.org/10.1007/s10452-012-9424-x
https://doi.org/10.1007/s10452-012-9424-...
, 2020Arai T, Chai IJ, Iizuka Y, Chang CW (2020) Habitat segregation and migration in tropical anguillid eels, Anguilla bengalensis bengalensis and A. bicolor bicolor. Scientific Reports 10: 16890. https://doi.org/10.1038/s41598-020-72788-9
https://doi.org/10.1038/s41598-020-72788...
, Arai and Chino 2019Arai T, Chino N (2019) Variations in the migratory history of the tropical catadromous eels Anguilla bicolor bicolor and A. bicolor pacifica in south-east Asian waters. Journal of Fish Biology 94: 752-758. https://doi.org/10.1111/jfb.13952
https://doi.org/10.1111/jfb.13952...
).

The aim of the present study was to investigate the genetic variation through DNA barcoding of A. bicolor in Indonesian, Malaysian and Philippine waters. All eel specimens were examined for their morphological characteristics and cytochrome c oxidase subunit I (COI) gene sequence. We also discuss the potential dispersion mechanism and importance of the population structure of A. bicolor in these regions.

A total of 18 anguillid eels were collected from Southeast Asia: nine specimens in Indonesia (Cilacap and Yogyakarta, central Java), four specimens in Malaysia (Penang, northwestern Peninsular Malaysia) and five specimens in the Philippines (Mindanao) through traps, hooks and lines from 2009 to 2019 (Fig. 1, Table 1). The external morphometric characteristics were determined (Table 1). The fin difference index (FDI), which is the relative ratio of the ano-dorsal (the origin of the dorsal fin to the anus) length (Z) and the total length (LT) (Ege 1939Ege V (1939) A revision of the genus Anguilla Shaw. Dana Report 16: 8-256.), was calculated as follows: FDI=100 Z LT-1.

Figure 1
Map of sampling locations of Anguilla bicolor bicolor from Indonesia and Malaysia and A. bicolor pacifica from the Philippines. Sampling locations are shown in red. Locations of Banda Aceh in northern Sumatra of Indonesia, Sukabumi in western Java of Indonesia, Andhra Pradesh in southeast India, Langkawi and Penang islands of northwest Peninsular Malaysia, Cebu in the Philippines, and Yangon of Myanmar, which were used in molecular phylogenetic and haplotype network analyses, are shown in blue. Base map is downloaded from http://viewer.nationalmap.gov/viewer (USGS 2020USGS (2020) National map viewer. USA Department of the Interior, United States Geological Survey. http://viewer.nationalmap.gov/viewer [Accessed: 05/10/2020]
http://viewer.nationalmap.gov/viewer...
).

Table 1
Morphometric characteristics of tropical anguillid eels collected in Southeast Asia.

DNeasy Blood & Tissue Kit (QIAGEN, Germany) was used to extract genomic DNA from a dorsal fin clip. Approximately 600 bp region of the mitochondrial COI gene was amplified using different combinations of universal primers: FishF1 (5’TCA ACC AAC CAC AAA GAC ATT GGC AC3’), FishF2 (5’TCG ACT AAT CAT AAA GAT ATC GGC AC3’), FishR1 (5’TAG ACT TCT GGG TGG CCA AAG AAT CA3’), and FishR2 (5’ACT TCA GGG TGA CCG AAG AAT CAG AA3’) (Ward et al. 2005Ward RD, Zemlak TS, Innes BH, Last PR, Herbert PDN (2005) DNA barcoding Australia’s fish species. Philosophical Transactions of the Royal Society B: Biological Sciences 360: 1847-1857. https://doi.org/10.1098/rstb.2005.1716
https://doi.org/10.1098/rstb.2005.1716...
). The samples that could not be amplified by these primers were subsequently amplified with the primers, AngF (5’TCA CCC GTT GAT TCT TTT CT3’) and AngR (5’CCG ATA GCC ATT ATT GCT CAG3’), which were designed in this study to amplify 835 bp of COI (starting from position 8 until 842) from Anguilla eels. The primers were designed by targeting the conserved sites of the COI genes from different species of sequenced Anguilla eels (Minegishi et al. 2005Minegishi Y, Aoyama J, Inoue JG, Miya M, Nishida M, Tsukamoto K (2005) Molecular phylogeny and evolution of the freshwater eels genus Anguilla based on the whole mitochondrial genome sequences. Molecular Phylogenetics and Evolution 34: 134-146. https://doi.org/10.1016/j.ympev.2004.09.003
https://doi.org/10.1016/j.ympev.2004.09....
). Each PCR reaction contained 2 µl of DNA sample, 2.5 µl of each 10 µM primer, 25 µl of 2x Taq PCR Master Mix (QIAGEN, Germany) and 18 µl of distilled water. The PCR conditions were initially 95°C for 2 mins, then 35 cycles of 94°C for 30 s, 50°C for 30 s and 72°C for 60 s, and finally 72°C for 10 minutes. PCR amplicons were purified using QIAquick Gel Extraction Kit (QIAGEN, Germany), and sequenced bi-directionally with the same primers.

MEGA version X (Kumar et al. 2018Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution 35: 1547-1549. https://doi.org/10.1093/molbev/msy096
https://doi.org/10.1093/molbev/msy096...
) was used to edit and assemble DNA sequence trace files. To validate the species identity, the contig sequences were compared for percent similarity with the reference sequences in the GenBank database (Benson et al. 2013Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW (2013) GenBank. Nucleic Acids Research 41(D1): D36-D42. https://doi.org/10.1093/nar/gks1195
https://doi.org/10.1093/nar/gks1195...
) by using BLAST search (Altschul et al. 1990Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. Journal of Molecular Biology 215: 403-410. https://doi.org/10.1016/S0022-2836(05)80360-2
https://doi.org/10.1016/S0022-2836(05)80...
). The contig sequences of eels from Indonesia, Malaysia and Philippines were submitted to the GenBank database with accession numbers MT107677 - MT107685, MT107673 - MT107676 and MT107686 - MT107690, respectively. In addition to these eighteen sequences, the COI sequences of thirty A. bicolor bicolor specimens from other localities that were found in the GenBank were also included in the analysis: Banda Aceh in northern Sumatra of Indonesia (22 specimens; KY618768 - KY618795), Sukabumi in western Java of Indonesia (one specimen; KU692247), Andhra Pradesh in southeast India (two specimens; MG675613, KP979655), Langkawi (one specimen; KF182304) and Penang islands of northwest Peninsular Malaysia (3 specimens; KM875503 - KM875505), and Yangon of Myanmar (one specimen; AP007236). The COI sequences of A. bicolor pacifica from Cebu in the Philippines (one specimen; AP007237) and Anguilla megastoma Kaup, 1856 (as outgroup; AP007243) were also included (Fig. 1).

GUIDANCE version 2 (Sela et al. 2015Sela I, Ashkenazy H, Katoh K, Pupko T (2015) GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters. Nucleic Acids Research 43: W7-W14. https://doi.org/10.1093/nar/gkv318
https://doi.org/10.1093/nar/gkv318...
) was used to create multiple sequence alignment via its inbuilt Clustal W version 2 (Larkin et al. 2007Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23(21): 2947-2948. https://doi.org/10.1093/bioinformatics/btm404
https://doi.org/10.1093/bioinformatics/b...
), which also assigned the alignment with a robust score of 1. The multiple sequence alignment was trimmed at both ends, resulting in all sequences having similar length of 445 bp. No internal gap was observed in the alignment. MEGA was used to construct three phylogenetic trees via Neighbour Joining (NJ), Maximum Parsimony (MP) and Maximum Likelihood (ML) algorithms. The NJ tree was constructed using the Kimura 2-parameter (K2P) model (incorporating transitions and transversions) with uniform rates. The MP tree was searched using Tree-Bisection-Reconnection with search level 1. The initial tree was obtained by 1000 random addition replicates. A total of 100 most parsimonious trees were retained. The ML tree was constructed with the best-fit nucleotide substitution model, K2P with discrete Gamma distribution (+G; 5 categories), which was determined using MEGA. A heuristic search starting with the initial tree (based on NJ and BioNJ algorithms) was conducted using the Nearest-Neighbour-Interchange method with no branch swap filter. Bootstrap test with 1000 replicates was also carried out for the NJ, MP and ML analyses. Haplotype analysis was carried out using DnaSP version 6 (Rozas et al 2017Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A (2017) DnaSP 6: DNA sequence polymorphism analysis of large datasets. Molecular Biology and Evolution 34: 3299-3302. https://doi.org/10.1093/molbev/msx248
https://doi.org/10.1093/molbev/msx248...
), and a median joining haplotype network was constructed using Network version 10 (www.fluxus-engineering.com). Statistical analysis was not carried out because the number of samples in some localities was too low to produce meaningful results.

Eighteen eel samples had short dorsal fin and skin without variegated markings. All the eel samples had FDI values of -0.3 to 4.7 % (Table 1). Based on the non-variegated skin and short dorsal fin, the eel specimens could be any species in the following list: A. bicolor bicolor, A. bicolor pacifica, Anguilla obscura Günther, 1872, Anguilla australis australis Richardson, 1841, Anguilla australis schmidtii Phillipps, 1925 (Ege 1939Ege V (1939) A revision of the genus Anguilla Shaw. Dana Report 16: 8-256., Watanabe et al. 2004Watanabe S, Aoyama J, Tsukamoto K (2004) Reexaminationof Ege’s (1939) use of taxonomic characters of the genus Anguilla. Bulletin of Marine Science 74: 337-351., Arai 2016Arai T (2016) Taxonomy and distribution. In: Arai T (Ed.) Biology and ecology of anguillid eels. Boca Raton, CRC Press, 1-20.). To further determine which species from the list, diagnostic geographical distribution (Ege 1939) was used. Thirteen specimens from Indonesia and Malaysia and five specimens from the Philippines were identified as A. bicolor bicolor and A. bicolor pacifica, respectively (Table 1).

DNA barcoding using the COI gene confirmed that the 13 specimens from Indonesia and Malaysia and five specimens from the Philippines were A. bicolor bicolor and A. bicolor pacifica, respectively (Table 1), with 99-100 % maximum identity matches with the reference sequences in the GenBank database. Apart from the universal primers used, this study showed that DNA barcoding could also be carried out using novel primers that were designed for Anguilla eels.

From our phylogenetic analyses (Fig. 2), A. bicolor bicolor samples were observed to form a clade (bootstrap proportion = >60 %) that was distinct from the clade (bootstrap proportion ≥ 90 %) formed by A. bicolor pacifica samples. This confirms the differentiation of A. bicolor into two subspecies. The MP tree strongly supports the presence of two subgroups within the A. bicolor bicolor clade (bootstrap proportion: subgroup 1 = 80%, subgroup 2 = 66%). These two subgroups are also found in the NJ tree, though weakly supported by bootstrap proportion (subgroup 1 = 50%, subgroup 2 = 58%). However, these two subgroups were not clearly observed in the ML tree.

Figure 2
Maximum Parsimony tree using the COI gene sequences of Anguilla bicolor bicolor and Anguilla bicolor pacifica and additional sequences obtained from the GenBank database with indicated accession numbers. Anguilla megastoma was used as outgroup. The consistency index is 0.73, the retention index is 0.93, and the composite index is 0.82 for all sites and 0.68 for parsimony-informative sites. The percentages of the bootstrap test for Maximum Parsimony/Neighbour Joining/Maximum Likelihood are shown next to the branches.

Haplotype analysis revealed a total of 18 different haplotypes in A. bicolor bicolor (H1 - H18 in Fig. 3) and 2 different haplotypes in A. bicolor pacifica (H19-H20 in Fig. 3). The constructed haplotype network (Fig. 3) further confirmed the presence of two mitochondrial sublineages in A. bicolor bicolor, as the haloptypes could be grouped into two haplogroups or populations.

Figure 3
Haplotype network constructed with Anguilla bicolor COI gene sequences. Each colour represents a sample site. The size of the circle is proportional to the number of samples that belong to each haplotype. White circle refers to median vector which is a hypothesized or missing haplotype. Each dash, which appears on the line that connects two haplotypes together, symbolizes one mutational step.

Anguilla bicolor from the Indian Ocean (A. bicolor bicolor) and Pacific Ocean (A. bicolor pacifica) were found to diverge from each other, and the outcomes of our COI gene sequence were similar to those previous studies using microsatellites, mitochondrial control region and cytochrome b sequences (Minegishi et al. 2012Minegishi Y, Gagnaire PA, Aoyama J, Bosc P, Feunteun E, Tsukamoto K, Berrebi P (2012) Present and past genetic connectivity of the Indo-Pacific tropical eel Anguilla bicolor. Journal of Biogeography 39: 408-420. https://doi.org/10.1111/j.1365-2699.2011.02603.x
https://doi.org/10.1111/j.1365-2699.2011...
, Fahmi et al. 2015Fahmi MR, Solihin DD, Shao Z, Pouyaud L, Berrebi P (2015) Population genetic structure of the tropical eel Anguilla bicolor in Indonesian waters based on microsatellite markers. Journal of Vertebrate Biology 64: 87-96. https://doi.org/10.25225/fozo.v64.i2.a1.2015
https://doi.org/10.25225/fozo.v64.i2.a1....
). The previous studies suggest that A. bicolor has diverged into two subspecies in the two oceans. In the eastern and western sides of the Indian Ocean, the genetic profiles of A. bicolor bicolor were found to be similar. However, the genetic profile of either the eastern or western side of the Indian Ocean was observed to have two divergent mitochondrial sublineages (Minegishi et al. 2012Minegishi Y, Gagnaire PA, Aoyama J, Bosc P, Feunteun E, Tsukamoto K, Berrebi P (2012) Present and past genetic connectivity of the Indo-Pacific tropical eel Anguilla bicolor. Journal of Biogeography 39: 408-420. https://doi.org/10.1111/j.1365-2699.2011.02603.x
https://doi.org/10.1111/j.1365-2699.2011...
, Fahmi et al. 2015Fahmi MR, Solihin DD, Shao Z, Pouyaud L, Berrebi P (2015) Population genetic structure of the tropical eel Anguilla bicolor in Indonesian waters based on microsatellite markers. Journal of Vertebrate Biology 64: 87-96. https://doi.org/10.25225/fozo.v64.i2.a1.2015
https://doi.org/10.25225/fozo.v64.i2.a1....
). These two sublineages coexist in the Indian Ocean, occurring randomly among and within sampling locations. The present results also supported the occurrence of two mitochondrial sublineages, as there were two distinctive groups in the eastern Indian ocean (Figs 2, 3).

Based on the COI sequence analysis, the results suggest that different A. bicolor bicolor populations could co-occur geographically in Indonesian and Malaysian waters. Spawning areas of A. bicolor bicolor are thought to be located in the waters off west Sumatra (Jespersen 1942Jespersen P (1942) Indo-Pacific leptochephalids of the genus Anguilla. Dana Report 22: 1-128.), and off east Madagascar (Jubb 1961Jubb RA (1961) The freshwater eels (Anguilla spp.) of southern Africa: an introduction to their identification and biology. Annuals of the Cape Provincial Museum 1: 15-48., Robinet et al. 2003Robinet T, Lecomte-Finiger R, Escoubeyrou K, Feunteun E (2003) Tropical eels Anguilla spp. recruiting to Reunion Island in the Indian Oceans: taxonomy, patterns of recruitment and early life histories. Marine Ecology Progress Series 259: 263-272. https://doi.org/10.3354/meps259263
https://doi.org/10.3354/meps259263...
). These two geographically different spawning areas might explain the occurrence of two divergent populations of A. bicolor bicolor in the Indian Ocean. Thus, the present study supports the hypothetical occurrence of the two spawning grounds of A. bicolor bicolor in the Indian Ocean. Furthermore, the ages of recruitment of this species between the east (148-202 days in Java of Indonesia) and west coasts (68-96 days in Mascarene Islands) of the Indian Ocean definitely differed (Arai et al. 1999aArai T, Limbong D, Otake T, Tsukamoto K (1999a) Metamorphosis and inshore migration of tropical eels Anguilla spp. in the Indo-Pacific. Marine Ecology Progress Series 182: 283-293. https://doi.org/10.3354/meps182283
https://doi.org/10.3354/meps182283...
, Robinet et al. 2003Robinet T, Lecomte-Finiger R, Escoubeyrou K, Feunteun E (2003) Tropical eels Anguilla spp. recruiting to Reunion Island in the Indian Oceans: taxonomy, patterns of recruitment and early life histories. Marine Ecology Progress Series 259: 263-272. https://doi.org/10.3354/meps259263
https://doi.org/10.3354/meps259263...
). This suggests that A. bicolor bicolor could be reasonably assumed to have different populations in the east and west sides of the Indian Ocean.

Anguilla bicolor bicolor in the eastern Indian Ocean has a longer leptocephalus period (119-171 days) (Arai et al. 1999aArai T, Limbong D, Otake T, Tsukamoto K (1999a) Metamorphosis and inshore migration of tropical eels Anguilla spp. in the Indo-Pacific. Marine Ecology Progress Series 182: 283-293. https://doi.org/10.3354/meps182283
https://doi.org/10.3354/meps182283...
) and is spawning throughout the year (Arai et al. 2016Arai T, Abdul Kadir SR, Chino N (2016) Year-round spawning by a tropical catadromous eel Anguilla bicolor bicolor. Marine Biology 163: 37. https://doi.org/10.1007/s00227-015-2792-8
https://doi.org/10.1007/s00227-015-2792-...
, Arai and Abdul Kadir 2017aArai T, Abdul Kadir SR (2017a) Opportunistic spawning of tropical anguillid eels Anguilla bicolor bicolor and A. bengalensis bengalensis. Scientific Reports 7: 41649. https://doi.org/10.1038/srep41649
https://doi.org/10.1038/srep41649...
). These life history strategies might enable A. bicolor bicolor to disperse across the Indian Ocean. Seasonal changes of the South Equatorial Current and the long larval migration period in the Indian Ocean, which was estimated to be more than one year in anguillid eels (Pous et al. 2010Pous S, Feunteun E, Ellien C (2010) Investigation of tropical eel spawning area in the South-Western Indian Ocean: influence of the oceanic circulation. Progress in Oceanography 86: 396-413. https://doi.org/10.1016/j.pocean.2010.06.002
https://doi.org/10.1016/j.pocean.2010.06...
), might be capable of mixing A. bicolor bicolor larvae from different spawning areas. Further studies are needed to determine the exact spawning grounds and larval transportation mechanism and routes in A. bicolor bicolor. Nevertheless, these particular life history characteristics of A. bicolor bicolor and the oceanographic features of the Indian Ocean could explain the sympatric occurrence of different populations.

The specific choice of spawning area might be imprinted in anguillid eels including A. bicolor bicolor, although there is no physical barrier to migration to the different spawning areas. The occurrence of two populations in the eastern Indian Ocean suggests that population divergence in anguillid eels could still occur even in the absence of physical barriers during the spawning migration. Minegishi et al. (2012Minegishi Y, Gagnaire PA, Aoyama J, Bosc P, Feunteun E, Tsukamoto K, Berrebi P (2012) Present and past genetic connectivity of the Indo-Pacific tropical eel Anguilla bicolor. Journal of Biogeography 39: 408-420. https://doi.org/10.1111/j.1365-2699.2011.02603.x
https://doi.org/10.1111/j.1365-2699.2011...
) presented a different hypothesis, as this previous study found that A. bicolor bicolor diverged into two sublineages based on the mitochondrial control region but not when using the microsatellite markers. The study hypothesizes that there could be an incomplete lineage sorting or a possible secondary contact between the two groups after an initial population splitting.

This study focused only in the eastern side but did not include the western side of Indian Ocean. The sample sizes were also small in all localities. Therefore, more comprehensive research is needed to understand the population structure of A. bicolor bicolor across the Indian Ocean. This study has revealed a unique population structure in A. bicolor bicolor, revealing a clear genetic divergence in the eastern Indian Ocean. The molecular evidence calls for further research on the life history, stock assessment and protection of the populations of A. bicolor bicolor in Indonesia and Malaysia.

ACKNOWLEDGEMENTS

This study was financially supported by University Brunei Darussalam under the Competitive Research Grant Scheme (UBD/OVACRI/CRGWG(003)) and under the Faculty/Institute/Center Research Grant (UBD/RSCH/1.4/FICBF(b)/2019/021 and UBD/RSCH/1.4/FICBF(b)/2020/029).

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Publication Notes

  • Available online:

    March 24, 2021
  • Zoobank Register:

    http://zoobank.org/9F3E23D8-C236-4629-A270-03551CD55E12
  • Publisher:

    © 2021 Sociedade Brasileira de Zoologia. Published by Pensoft Publishers at https://zoologia.pensoft.net

Edited by

Editorial responsibility:

Walter A.P. Boeger

Publication Dates

  • Publication in this collection
    31 Mar 2021
  • Date of issue
    2021

History

  • Received
    05 Oct 2020
  • Accepted
    09 Dec 2020
  • Published
    24 Mar 2021
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