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Genome Wide Selection for growth curves

A methodology was proposed for the genetic evaluation of growth curves considering SNP (Single Nucleotide Polymorphisms) markers. At the first step, nonlinear regression growth models (Logistic) were fitted to the weight-age of each animal, and on second step the parameter estimates of the Logistic model were used as phenotype in a regression model (Bayesian LASSO - BL) which covariates were given by SNP genotypes. This approach allows the estimation of GBV (Genomic Breeding Values) for weight at either time of growth trajectory, allowing also the production of genomic growth curves, which selected groups of individuals with larger growth efficiency. The simulated data set was constituted of 2,000 individuals (being 1,000 in the training and 1,000 in the validation population) each one with 453 SNP markers distributed along 5 chromosomes. The results indicated high efficiency of the BL method to predict GBV in the validation population using information from the training population (correlation coefficients varying between 0.79 and 0.93). The BL also presented high efficiency to detect QTL, once the most expressive estimated SNP effects were located at positions closed to true QTL position fixed in the simulation.

SNP; Bayesian LASSO; longitudinal data


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