Probe |
Sequence of probe (5'-3') |
Place of destination (rRNA) and position |
Specificity |
*%FA |
**NaCl (mM) |
Reference |
NON |
TAGTGACGCCGTCGA |
- |
Negative control |
30 |
0,9 |
YOKOKAWA & NAGATA (2005YOKOKAWA, T.; NAGATA, T. Growth and grazing mortality rates of phylogenetic groups of bacterioplankton in coastal marine environments. Applied and Environmental Microbiology, Otsu, v.71, n.11, p.6799-6807, Nov. 2005. Available from: <Available from: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1287730/
>. Accessed: Apr. 06, 2016. doi: 10.1128/AEM.71.11.6799-6807.2005. https://www.ncbi.nlm.nih.gov/pmc/article...
) |
NIT3 |
CCTGTGCTCCATGCTCCG |
16S (1030-1047) |
Nitrobacter spp.-NOB |
40 |
56 |
WAGNER et al. (1996WAGNER, M. et al. In situ analysis of nitrifying bacteria in sewage treatment plants. Water Science and Technology, Miinchen, v.34, n.1-2, p.237-244, 1996. Available from: <Available from: https://www.sciencedirect.com/science/article/pii/0273122396005148
>. Accessed: Apr. 28, 2016. doi: 10.1016/0273-1223(96)00514-8. https://www.sciencedirect.com/science/ar...
) |
NITCOC206 |
CGGTGCGAGCTTGCAAGC |
- |
Nitrococcus mobilis-AOB |
20 |
- |
JURETSCHKO et al. (1998JURETSCHKO, S. et al. Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-Like bacteria as dominant populations. Applied and Environmental Microbiology, Hamburg, v.64, n.8, p.3042-3051, Aug. 1998. Available from: <Available from: http://aem.asm.org/content/64/8/3042.full.pdf+html
>. Accessed: Apr. 29, 2016. http://aem.asm.org/content/64/8/3042.ful...
) |
NSO190 |
CGATCCCCTGCTTTTCTCC |
16S (190-208) |
Nitrosomonadales-AOB |
35 |
20 |
MOBARRY et al. (1996MOBARRY, B.K et al. Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Applied and Environmental Microbiology, Evanston, v.62, n.6, p.2156-2162, Jun. 1996. Available from: <Available from: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC167993/
>. Accessed: Apr. 06, 2016. PMCID: PMC167993. https://www.ncbi.nlm.nih.gov/pmc/article...
) |
NSO1225 |
CGCCATTGTATTACGTGTGA |
16S (1224-1243) |
Nitrosomonadales-AOB |
35 |
80 |
MOBARRY et al. (1996MOBARRY, B.K et al. Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Applied and Environmental Microbiology, Evanston, v.62, n.6, p.2156-2162, Jun. 1996. Available from: <Available from: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC167993/
>. Accessed: Apr. 06, 2016. PMCID: PMC167993. https://www.ncbi.nlm.nih.gov/pmc/article...
) |
NSMR76 |
CCC CCC TCT TCT GGA TAC |
16S (132-149) |
Nitrosomonas marina-like-AOB |
20 |
225 |
BURRELL et al. (2001BURRELL, P.C. et al. Identification of bacteria responsible for ammonia oxidation in freshwater aquaria. Applied and Environmental Microbiology, Moorpark, v.67, n.12, p.5791-5800, Dec. 2001. Available from: <Available from: http://aem.asm.org/content/67/12/5791.short
> Accessed: Jul. 28, 2018. doi: 10.1128/AEM.67.12.5791-5800.2001. http://aem.asm.org/content/67/12/5791.sh...
) |
NTSPA685 |
CAC CGG GAA TTC CGC GCT CCT C |
16S (664-685) |
Nitrospira moscoviensis, Nitrospira marina-NOB |
20 |
225 |
BURRELL et al. (2001BURRELL, P.C. et al. Identification of bacteria responsible for ammonia oxidation in freshwater aquaria. Applied and Environmental Microbiology, Moorpark, v.67, n.12, p.5791-5800, Dec. 2001. Available from: <Available from: http://aem.asm.org/content/67/12/5791.short
> Accessed: Jul. 28, 2018. doi: 10.1128/AEM.67.12.5791-5800.2001. http://aem.asm.org/content/67/12/5791.sh...
) |
NTSPA712 |
CGCCTTCGCCACCCGGCCTTCC |
- |
Phylum Nitrospira-NOB |
50 |
28 |
DAIMS et al. (2001DAIMS, H. et al. In situ characterization of Nitrospira-Like Nitrite-Oxidizing Bacteria active in wastewater treatment plants. Applied and Environmental Microbiology, Freising, v.67, n.11, p.5273-5284, Nov. 2001. Available from: <Available from: http://aem.asm.org/content/67/11/5273.short
> Accessed: Apr. 06, 2016. doi: 10.1128/AEM.67.11.5273-5284.2001. http://aem.asm.org/content/67/11/5273.sh...
) |
PAE997 |
TCTGGAAAGTTCTCAGCA |
16S (997-1014) |
Pseudomonas spp.-Heterotrophic |
35 |
- |
AMANN et al. (1996AMANN, RUDOLF et al. In situ visualization of high genetic diversity in a natural microbial community. Journal of Bacteriology, LehrstuhlFu¨rMikrobiologie, Technische Universita¨tMu¨nchen, Munich, Germany, v.178, n.12, p.3496-3500, Jun. 1996. Available from: <Available from: http://jb.asm.org/content/178/12/3496.abstract
>. Accessed: Jul. 27, 2018. doi: 10.1128/jb.178.12.3496-3500.1996. http://jb.asm.org/content/178/12/3496.ab...
) |