Logomarca do periódico: Genetics and Molecular Biology

Open-access Genetics and Molecular Biology

Publicação de: Sociedade Brasileira de Genética
Área: Ciências Biológicas
Versão impressa ISSN: 1415-4757
Versão on-line ISSN: 1678-4685
Título anterior: Brazilian Journal of Genetics
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Genetics and Molecular Biology, Volume: 48, Número: 4, Publicado: 2025

Genetics and Molecular Biology, Volume: 48, Número: 4, Publicado: 2025

Document list
Documents
Human and Medical Genetics
Characterization of a novel unliked 12 X-STR typing assay for forensic purposes in an admixed Rio de Janeiro population sample Mello, Isadora C. de Toledo e Simas, Maria Clara da Costa Silva, Rosane Moura Neto, Rodrigo Soares de

Resumo em Inglês:

Abstract X-STR analysis offers novel pathways for exploring both paternal and maternal lineages, which is particularly valuable in parenthood testing where standard methods fail. Despite being limited in availability, these markers show promise in improving forensic analyses, especially with emerging technology such as Massively Parallel Sequencing (MPS). This study introduces a new X-STRs multiplex system that could increase discrimination power in complex cases, expanding marker diversity and complementing traditional markers. We selected 12 X-STR loci (DXS61071, DXS97199, DXS12310, DXS14221, DXS33963, DXS39152, DXS44734, DXS54471, DXS68748, DXS70370, DXS13932, and DXS14986) for the assay. Genomic DNA was extracted from 100 unrelated males and 104 females, in a sample population from Rio de Janeiro, amplified with custom-designed primers and subjected to capillary gel electrophoresis and MPS. Forensic efficiency evaluation revealed high values of the combined power of discrimination in males (cPDM ≥ 0.999999997) and females (cPDF ≥ 0.999999999999995), as well as combined paternity exclusion (cPE ≥ 0.99999). Among these markers, two exhibit high polymorphism, with multiple isoalleles distinguishable by their sequences, using MPS technology. The incorporation of these new X-STR markers multiplex system in conjunction with MPS analysis could potentially increase the power of discrimination in forensic analysis for mixtures and complex cases.
Animal Genetics
Sequenced genomes and chromosome mapping illuminate key aspects of satellite DNA biology in Drosophila gouveai and D. borborema (buzzatii cluster, repleta group) Rossi, Anna C. Laborne, Ana M. Barrios-Leal, Dora Y. Manfrin, Maura H. Kuhn, Gustavo C.S.

Resumo em Inglês:

Abstract Satellite DNAs are abundant components of the genomes of many eukaryotic species. They are composed of long and rather homogeneous arrays of tandem repeats that are typically located at the heterochromatin. They may contribute to the structural organization and regulatory dynamics of the genome. However, they evolve rapidly between species and changes in their sequences and abundance may contribute to the process of speciation. Here we used Illumina genomic sequencing raw data and the TAREAN bioinformatic tool to identify and characterize the most abundant satDNAs present in two sister species from the buzzatii cluster (repleta group): D. gouveai and D. borborema. We found five satDNAs, two are reported in these species for the first time (CDSTR138 and CDSTR230), two have already been reported (pBuM and DBC-150) and one is described here for the first time (CDSTR8). These satDNAs differ in both quantitative and qualitative terms between the two species. Most notoriously, the pBuM satDNA was found in D. gouveai, but it is virtually absent in D. borborema, despite their relatively recent divergence (<0.5My). We mapped these satDNAs to the chromosomes and found that most of them are located near or at the centromeres, with overlapping distribution in several locations.
Genetics of Microorganisms
Fungal diversity in larval diets of Melipona interrupta: Impacts on queen development and survival Queiroz, Luana Evillyn Vinente de Fernandes, Flavia da Silva Santos, Gabriel Garcês Souza, João Vicente Braga de Carvalho-Zilse, Gislene Almeida

Resumo em Inglês:

Abstract Stingless bees like Melipona interrupta play vital ecological roles and rely on diverse microbial communities in their larval food. This study investigated the impact of fungal diversity on larval development and caste differentiation. Fungi isolated from brood cell food were identified morphologically and molecularly, with Fomitopsis sp. and Zygosaccharomyces sp. showing high prevalence. Artificial larval rearing was conducted using sterilized and non-sterilized food inoculated with these fungi. Zygosaccharomyces sp. significantly enhanced survival rates and queen production, achieving results comparable to natural conditions, while Fomitopsis sp. had a modest effect. Statistical analyses confirmed significant associations between fungal treatments and larval outcomes. These findings underscore the functional role of fungi in M. interrupta larval nutrition and offer potential applications in sustainable meliponiculture.
Genomics and Bioinformatics
The genomes sequenced for the neotropical stingless bees Scaptotrigona bipunctata and S. depilis strengthen the phylogenomics support for the taxonomy of social bees Hofstatter, Paulo Gonzalez Freitas, Flávia Cristina de Paula Luna-Lucena, Danielle Campana, Leonardo Hartfelder, Klaus

Resumo em Inglês:

Abstract Bees are fundamental factors in ecology and agriculture due to their ecosystem services as pollinators, including many important crops. Because of its ecological significance and value to humans, the honey bee, Apis mellifera, was one of the earliest insect species targeted for genome sequencing, and over the last decades, many other species of social bees, including practically all species comprising the genus Apis and dozens of bumble bee species (Bombini) have complete genome assemblies deposited in public databases. The largest clade of the social bees, the stingless bees (Meliponini), is, however, strongly underrepresented. To date, only five genomes for species of three genera have been released for the New World stingless bees, which comprise over 400 species distributed in 32 genera. Different from the honey bee, these species are native to the Neotropics, being important pollinators of many native plants and cultivars, including greenhouse cultures. We present here the genome assemblies for two species of the genus Scaptotrigona, one of the largest genera among the stingless bees in Brazil. The new datasets are highly complete and, as shown in our phylogenomics analysis, these genomes provide robust support for the clades of the corbiculate bees and their evolutionary history.
Genomics and Bioinformatics
Computational modeling of oxytocin-receptors interactions with the common marmoset Callithrix jacchus Pro8OT variant Veber, Bruno Fuscaldo, Rodrigo dos Santos Vargas-Pinilla, Pedro Missaggia, Bruna Oliveira Bortolini, Maria Cátira Netz, Paulo Augusto

Resumo em Inglês:

Abstract The oxytocinergic system plays a crucial role in regulating physiological and behavioral processes, making it a key component of neurobiology in both humans and animals. This study utilizes computational modeling to explore the interaction between G protein-coupled receptors (GPCRs) and the Homo sapiens neurohormone oxytocin (Leu8OT), as well as, for the first time, the Pro8OT variant found in Callithrix jacchus and other New World monkeys. Pro8OT has been previously recognized for its functional and evolutionary significance. We performed homology modeling of receptors (OTR, VTR1a, and VTR1b) in both human and marmoset species. Additionally, cholesterol’s role in modulating receptor binding and stability was evaluated in our simulations. Our findings suggest a general pattern across primates, preserving the essential pleiotropic functions of the oxytocinergic system in regulating physiology and behavior, which align with the shared evolutionary framework of species within this order. However, some specific variations were observed, as Pro8OT exhibits distinct binding affinities and unique receptor interactions. Comparative analysis of human and marmoset OT-OTR complexes indicate a more stable and favorable binding environment in marmoset systems, suggesting species-specific adaptations. These results enhance our understanding of the oxytocinergic system, bridging computational models with evolutionary neurobiology and providing insights for future functional studies.
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