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A history of the biogeography of Amazonian fishes

ABSTRACT

The history of knowledge about Amazonian biogeography is as rich as its fish community, and a fascinating theme of study in itself. Several current paradigms and controversies about Amazonian fish biogeography are rooted in principles dating from the second half of the 18th to the first half of the 19th centuries. The present work establishes a relationship between current biogeographical ideas and their old predecessors, on the basis of a chronologically-oriented historical continuity analysis. The advent of evolutionary theory has not contributed significantly to a transformation of the knowledge on the biogeography of Amazonian fishes. On the other hand, the two main schools of biogeographical thought (dispersalist and vicariant) had major implications on how Amazonian fish distribution is interpreted. The process was gradual and many hypotheses have combined elements from each of the two schools. Chronologically, practically the entire tradition of Amazonian biogeography takes place within the evolutionary paradigm, although its founder Louis Agassiz was himself an anti-evolutionist. The birth of Amazonian biogeography is Agassiz´s travel in Amazon. That document makes it clear that the author did not consider dispersal as a valid explanation for the biogeographical patterns he found. Later, Carl Eigenmann helps to spread the dispersalist tradition as a model for biogeographical explanations in fish distributions, a phase which lasted until the late 20th century. A major shift occurs with the contributions of Marylin Weitzman, Stanley Weitzman and Richard Vari, who associated the temporal framework of phylogenetic hypotheses with distribution patterns, underscoring the predictive power of vicariant biogeography. The present-day paradigm begins with the work of John Lundberg and attempts to incorporate geomorphological and phylogenetic information into integrative biogeographical hypotheses. Some emblematic problems have delayed proposition of general hypotheses on the phylogenetic biogeography of South American fishes, such as the poor state of knowledge of their species-level systematics; an incomplete distributional record for most species and sparse or non-existent data on the phylogenetic history of most supraspecific taxa. Such drawbacks are now being corrected at a fast pace. Recent advances on geographical distribution and an increasing number of phylogenetic hypotheses will allow unprecedented large-scale biogeographic analyses, including those based on event models and Bayesian inference. Thus, the biogeography of South American fishes, especially Amazonian ones, should soon experiment a new age of progress. The success of that new phase will depend on its ability to recognize and segregate multiple overlapping temporal layers of hydrological changes, and to develop analytical tools that can deal with temporal mixing.

Keywords:
Amazon; Biodiversity; Ichthyology; Neotropical; South America

RESUMO

A história do conhecimento da biogeografia amazônica é tão rica quanto sua comunidade de peixes e um tema fascinante de estudo em si. Vários paradigmas e controvérsias atuais sobre a biogeografia de peixes amazônicos estão enraizados em princípios que datam da segunda metade do século 18 até a primeira metade do século 19. O presente trabalho estabelece uma relação entre as idéias biogeográficas atuais e seus antecessores antigos a partir de uma análise histórica cronologicamente orientada. O advento da teoria evolutiva não contribuiu significativamente para a transformação do conhecimento sobre a biogeografia dos peixes amazônicos. Por outro lado, as duas principais escolas de pensamento biogeográfico (dispersalista e vicariante) tiveram grandes implicações sobre a interpretação da distribuição de peixes amazônicos. O processo foi gradual e muitas hipóteses combinaram elementos de cada uma das duas tradições. Cronologicamente, praticamente toda a história da biogeografia amazônica ocorre dentro do paradigma evolutivo, embora seu fundador Louis Agassiz fosse ele próprio um anti-evolucionista. O nascimento da biogeografia amazônica é o relatório de viagem de Agassiz na Amazônia. Esse documento deixa claro que o autor não considerou o dispersalismo como uma explicação válida para os padrões biogeográficos que encontrou. Mais tarde, Carl Eigenmann ajuda a disseminar a tradição dispersalista como modelo para explicações biogeográficas na distribuição de peixes, uma fase que perdurou até o final do século 20. Uma grande mudança ocorre com as contribuições de Marylin Weitzman, Stanley Weitzman e Richard Vari, que associaram a dimensão temporal de hipóteses filogenéticas com padrões de distribuição, revelando o poder preditivo da biogeografia vicariante. O paradigma atual começa com o trabalho de John Lundberg e busca incorporar informações geomorfológicas e filogenéticas em hipóteses biogeográficas integrativas. Alguns problemas emblemáticos atrasaram a proposição de hipóteses gerais sobre a biogeografia vicariante de peixes da América do Sul, como o mau estado de conhecimento de sua sistemática em nível de espécie; o registro de distribuição geográfica incompleto para a maioria das espécies e dados escassos ou inexistentes sobre a história filogenética da maioria dos táxons supraespecíficos. Essas desvantagens agora estão sendo corrigidas em um ritmo acelerado. Avanços recentes na distribuição geográfica e um número crescente de hipóteses filogenéticas permitirão inéditas análises biogeográficas de grande escala, inclusive aquelas baseadas em modelos de eventos e inferência bayesiana. Assim, a biogeografia dos peixes sul-americanos, especialmente os amazônicos, deve experimentar em breve uma nova era de progresso. O sucesso dessa nova fase dependerá de sua capacidade de reconhecer e segregar múltiplas camadas temporais sobrepostas de mudanças hidrológicas e desenvolver ferramentas analíticas que possam lidar com a mistura temporal.

Palavras-chave:
Amazonas; América do Sul; Biodiversidade; Ictiologia; Neotropical

Introduction

For centuries, explaining the geographical distribution of faunas has been an enticing subject for scientists and the Amazonian biota stands out as a most daunting challenge among them. The Amazon basin has the most diverse fish fauna on Earth, with myriad evolutionary lineages resulting from interactions of a multitude of geological processes dating back to Gondwana (cf. Ribeiro, 2006Ribeiro AC. Tectonic history and the biogeography of the freshwater fishes from the coastal drainages of eastern Brazil: an example of faunal evolution associated with a divergent continental margin. Neotrop Ichthyol . 2006; 4(2):225-46.; Dagosta, de Pinna, 2017Dagosta FCP, de Pinna M. Biogeography of Amazonian fishes: deconstructing river basins as biogeographic units. Neotrop Ichthyol . 2017; 15(3):e170034. Available from: 10.1590/1982-0224-20170034
https://doi.org/10.1590/1982-0224-201700...
). It includes extremely ancient lineages acquired by former continental connections, such as Osteoglossiformes, Characiformes, Siluriformes and Dipnoi, in addition to tens of species derived from marine ancestors which invaded the freshwater environment, as Potamotrygonidae, Tetraodontindae, Belonidae and many others. The largest parcel (over 80%) of the Amazonian ichthyofauna, however, belongs to three orders of the series Otophysi, namely Characiformes, Siluriformes and Gymnotiformes. In addition to its sheer vastness in area, the Amazon basin includes various distinct physiognomies, formed by the widely divergent terrain and geological backgrounds. In turn, this diversity is associated with a diversity of vegetation types, rivers and soils (cf. Goulding et al., 2003Goulding M, Barthem R, Ferreira E. The Smithsonian Atlas of the Amazon. Washington (DC): Smithsonian Books; 2003.).

The history of knowledge about the Amazonian biota is as rich as its fish community and geomorphology, and a fascinating theme of study in itself. This information, however, is scattered throughout a multitude of sources covering several centuries and which has rarely been the object of synthetic organization and analysis. The understanding of the biogeography of Amazonian fishes has changed over the years and compose a rich scenario against which one can appreciate shifting paradigms in biogeographical theory. Some modern hypotheses about the biogeography of Amazonian fishes can be traced back to traditions from the second half of the 17th century to the first half of the 19th. In this paper, we offer an analytical narrative of the evolution of our understanding of the biogeography of Amazonian fishes. Our aim is to offer both an organized picture of that history and also to connect its main features with advances in the broader subject of historical biogeography. As will be seen, changes in our understanding of Amazonian fish distribution reflect major shifts in the development of biology, but not always in synchronized fashion.

Material and Methods

We employ the Historical Method, i.e., trying to understand the major stages of taxonomic and biogeographic investigation on Amazonian fishes in causal sequential relation to preceding ideas about the same phenomena. We try to connect observed patterns with then-prevailing paradigms on evolution and biogeography. All pertinent literature is revised without a priori judgment about their current validity, as an attempt to understand their intrinsic significance in their own historical context. Only after that we proceeded to analyze them according to subsequent, and finally current, standards. Our sequence of presentation is broadly chronological and is divided in sections which reflect major historical periods. However, some specific contributions are discussed in the thematically-related section.

The distinction between concepts of dispersal and dispersion follows Platnick (1976Platnick NI. Concepts of dispersal in historical biogeography. Syst Zool . 1976; 25(3): 294-95.). Natural movement of individuals within the natural range of a taxon is considered dispersion, while dispersal refers to the original meaning by Buffon, i.e., movement of a taxon outside of its natural range (Nelson, 1978Nelson G. From Candolle to Croizat: Comments on the history of biogeography. J Hist Biol. 1978; 11(2):296-305.).

Results and Discussion

Discovery of the new world and the dawn of taxonomy (16th to 18th centuries). The earliest reports on the fishes of the Amazon were made by travelers-explorers of the 16th century, whose mission was to report to their rulers on the natural resources in the region. They provided only very general information about the existence of fishes, their abundance and their use by local people. Reports at that period are in the form of letters written by explorers of their own accord, and fishes are mentioned in passing as part of broader accounts on their travel experiences in the Amazon (Pereira, 2003Pereira RFM. A ictiologia na Amazônia brasileira de Diogo Nunes (1538) a Landi (1772): a visão dos viajantes e naturalistas que trataram de sua ictiofauna durante este período. [Msc Dissertation]. Belém: Museu Paraense Emilio Goeldi , Universidade Federal do Pará; 2003.). Documents from this period were not intended as scientific and their authors did not have specific academic background. Expectedly, reports from the 16th century did not have a significant impact on the knowledge of Amazonian ichthyology (Pereira, 2003Pereira RFM. A ictiologia na Amazônia brasileira de Diogo Nunes (1538) a Landi (1772): a visão dos viajantes e naturalistas que trataram de sua ictiofauna durante este período. [Msc Dissertation]. Belém: Museu Paraense Emilio Goeldi , Universidade Federal do Pará; 2003.). The Portuguese Diogo Nunes was the first individual ever to record any observations on Amazonian fishes. Nunes was part of the expedition led by Alonso Mercadillo to the Río Marañon and his observations were included in a letter of 1553 or 1554 to King D. João III of Portugal. His report informs that the expedition went from the Río Huallaga to the Río Marañon and then on to the rio Solimões, reaching in 1538 an area located between today’s Brazilian cities of Tefé and Coari, Nunes writes that fishes in that region are abundant and very diverse, being used in dried form as currency among natives (Papavero et al., 2000Papavero N, Teixeira DM, Overal WL, Pujol-Luz JR. O Novo Éden: A fauna da Amazônia brasileira nos relatos de viajantes e cronistas desde a descoberta do Rio Amazonas por Pinzón (1500) até o Tratado de Santo Ildefonso (1777). Belém: Museu Paraense Emilio Goeldi; 2000. (Coleção Alexandre Rodrigues Ferreira)., 2002Papavero N, Teixeira DM, Overal WL, Pujol-Luz JR. O Novo Éden. História da Amazônia brasileira nos relatos de viajantes e cronistas desde a descoberta do Rio Amazonas por Pinzón (1500) até o Tratado de Santo Ildefonso (1777): Com transcrição dos principais textos. Segunda Edição, revista e ampliada. Belém: Museu Paraense Emilio Goeldi ; 2002. (Coleção Alexandre Rodrigues Ferreira).). Interestingly, his travel predate the trip of Francisco de Orellana (of 1542), commonly conside red as “discoverer” of the Amazon.

The acting chaplain of Orellana’s expedition was Friar Gaspar de Carvajal. He recorded some reminiscences of the trip along the lower rio Madeira, lower rio Negro and the rio Amazonas, including references to fish on seven different occasions (Papavero et al., 1999Papavero N, Teixeira DM, Pujol-Luz JR. A fauna da Amazônia brasi leira nos relatos de viajantes e cronistas dos Séculos XVI ao XVIII. 2. A viagem de Orellana Rio Amazonas abaixo nos anos de 1541 e 1542 e a crônica de Frei Gaspar de Carvajal. Contribuições Avulsas sobre a História Natural do Brasil. 1999; 8:1-6., 2000Papavero N, Teixeira DM, Overal WL, Pujol-Luz JR. O Novo Éden: A fauna da Amazônia brasileira nos relatos de viajantes e cronistas desde a descoberta do Rio Amazonas por Pinzón (1500) até o Tratado de Santo Ildefonso (1777). Belém: Museu Paraense Emilio Goeldi; 2000. (Coleção Alexandre Rodrigues Ferreira)., 2002Papavero N, Teixeira DM, Overal WL, Pujol-Luz JR. O Novo Éden. História da Amazônia brasileira nos relatos de viajantes e cronistas desde a descoberta do Rio Amazonas por Pinzón (1500) até o Tratado de Santo Ildefonso (1777): Com transcrição dos principais textos. Segunda Edição, revista e ampliada. Belém: Museu Paraense Emilio Goeldi ; 2002. (Coleção Alexandre Rodrigues Ferreira).; Pereira, 2003Pereira RFM. A ictiologia na Amazônia brasileira de Diogo Nunes (1538) a Landi (1772): a visão dos viajantes e naturalistas que trataram de sua ictiofauna durante este período. [Msc Dissertation]. Belém: Museu Paraense Emilio Goeldi , Universidade Federal do Pará; 2003.). All such instances are vague, only making reference to the existence of fish as foodstuff. One passage refers to a five-span fish caught by hook and line, but no details are included. The sparse list of 16th century authors on Amazonian fishes includes also Francisco Vásquez, a navigation professional who took part in the expeditions of Pedro de Ursúa and Lope de Aguirre along the rio Negro and rio Solimões. As his predecessors, Vásquez makes only vague references to the abundance and culinary qualities of the fish in the region, without any observations which might provide technical information.

In the 17th century, attention of European naturalists was focused on the novelties arriving from territories dominated by Spain and Holland in the New world (Günther, 1880Günther A. An introduction to the study of fishes. Edinburgh: Adam and Charles Black; 1880.). The first - and only pre-Linnean - naturalist to offer accurate accounts of the South American ichthyofauna was George Marcgrave who visited Brazil as physician with the expedition of Count Maurits of Nassau with Willem Piso. Marcgrave died in Africa and his manuscripts and drawings were published by Piso in Marcgrave (1648). Myers (1964Myers GS. A brief sketch of the history of ichthyology in America to the year 1850. Copeia . 1964; 1964(1):33-41.) regarded Marcgrave as “the most important early work in the fauna and flora of America (p. 35)”. Marcgrave (1648Marcgrave G. Historia Naturalis Brasiliae. Auspicio et Beneficio Illustriss. I. Mauritii Com. Nassau... nontantum Plantae et Animalia, sed et Indigenarum morbi, ingenia et mores describuntur et iconibus supra quingentas illustrantur. Lugdun, Batavorum: apud Franciscus Hackiumet Amstelodami: apud Lud. Elzevirium; 1648.) includes illustrations of many specimens which cannot be identified to species level, but which nonetheless represent taxa that may possibly be Amazonian. The only species that can be indisputably be identified to species level in Marcgrave (1648Marcgrave G. Historia Naturalis Brasiliae. Auspicio et Beneficio Illustriss. I. Mauritii Com. Nassau... nontantum Plantae et Animalia, sed et Indigenarum morbi, ingenia et mores describuntur et iconibus supra quingentas illustrantur. Lugdun, Batavorum: apud Franciscus Hackiumet Amstelodami: apud Lud. Elzevirium; 1648.) and which also occurs in the Amazon is Callichthys callichthys (Linnaeus, 1758Linnaeus C. Systema Naturae per regna trianaturae, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Editiodecima, reformata.). Holmiae (Stockholm): Imprensis Laurentii Salvii. 1758; 1:1-824. t.1.).

The first species occurring in the Amazon were formally described by naturalists who never visited the region (Pereira, 2003Pereira RFM. A ictiologia na Amazônia brasileira de Diogo Nunes (1538) a Landi (1772): a visão dos viajantes e naturalistas que trataram de sua ictiofauna durante este período. [Msc Dissertation]. Belém: Museu Paraense Emilio Goeldi , Universidade Federal do Pará; 2003.). Those species were described on the basis of specimens almost always collected in other regions but which also occur in the Amazon. Linnaeus (1758Linnaeus C. Systema Naturae per regna trianaturae, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Editiodecima, reformata.). Holmiae (Stockholm): Imprensis Laurentii Salvii. 1758; 1:1-824. t.1.) was the first to describe Amazonian fish species (Anostomus anostomus, Charax gibbosus, Astyanax bimaculatus, Gasteropelecus sternicla, Aspredo aspredo, Callichthys callichthys, Acanthodoras cataphractus, Loricaria cataphracta, Gymnotus carapo, Cichlassoma bimaculatum, Crenicichla saxatilis and Achirus achirus), none of those occurring exclusively in the Amazon. Most of the South American fish species of commercial importance were described until the second half of the 19th century, all of which by European naturalists (Böhlke et al., 1978Böhlke JE, Weitzman SH, Menezes NA. Estado atual da sistemática dos peixes de água doce da América do Sul. Acta Amazon. 1978; 8(4):657-77.).

The first naturalists and the founding of Amazonian fish biogeography (end of 18th and 19th centuries). According to Myers (1947Myers GS. The Amazon and its fishes. Part 2. The Fishes. Aquar J. 1947; 18(7):13-20, 34.), the first naturalist to actually collect fishes in the Amazon was Alexandre Rodrigues Ferreira, who led a philosophical voyage (1783-1792) intended to provide an inventory of the peoples, places and natural objects encountered in Brazil, then within the domain of the Portuguese crown (Akerman, 2009Akerman JR. The Imperial map: cartography and the mastery of empire. Chicago: The University of Chicago Press; 2009. (The Kenneth Nebenzahl Jr. Lectures in the History of Cartography).). Many specimens were superbly illustrated, but the material did not result in publications in the short term. Most specimens were seized in 1808 on the occasion of the invasion of Portugal by Napoleonic troops headed by Junot (Vanzolini, 1996Vanzolini PE. A contribuição Zoológica dos primeiros naturalistas viajantes no Brasil. Revista USP. 1996; (30):190-238.) and sent to France. Part of the stolen material was examined by Etienne Geoffroy Saint-Hilaire and his son Isidore Geoffroy Saint-Hilaire, but no fish were described by those authors. It was only many years later that Cuvier and Valenciennes wrote scientific reports based on that material (e.g. Cuvier, 1819Cuvier G. Sur les poissons du sous-genre Hydrocyon, sur deux nouvelles espèces de Chalceus, sur trois nouvelles espèces du Serrasalmes, et sur l’Argentina glossodonta de Forskahl, qui est l’Albula gonorhynchus de Bloch. Mem Mus Natl Hist Nat , Ser A. 1819; 5:351-79., 1829Cuvier G. Le Règne Animal, distribué d’après son organisation, pour servir de base à l’histoire naturelle des animaux et d’introduction à l’anatomie comparée. Paris: Chez Déterville Libraire; 1829.; Cuvier, Valenciennes, 1846Cuvier G, Valenciennes A. Histoire Naturelle des Poisons. Paris: Chez P. Bertrand ; 1846. t. 18, Suite du livre dix-huitième, Cyprinoïdes. Livre dix-neuvième. Des Ésoces ou Lucioïdes.), describing some of the most iconic Amazonian fish species, such as Colossoma macropomum (Cuvier, 1816), Hydrolycus scomberoides (Cuvier, 1819), Osteoglossum bicirrhosum (Cuvier, 1829), Piaractus brachypomus (Cuvier, 1818Cuvier G. Sur les poissons du sous-genre Mylètes. Mem Mus Natl Hist Nat, Ser A. 1818; 4:444-56.) and Vandellia cirrhosa Valenciennes, 1846.

The work of Linnaeus (1758Linnaeus C. Systema Naturae per regna trianaturae, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Editiodecima, reformata.). Holmiae (Stockholm): Imprensis Laurentii Salvii. 1758; 1:1-824. t.1.) triggered other European naturalists (e.g. Bloch, Cuvier, Heckel, Kner, Lacepède, Müller, Valenciennes) to start describing fishes from the New World and a growing number of Amazonian species is published in that wake until the mid-19th century. The origin and early development of ichthyology is almost entirely European (Myers, 1964Myers GS. A brief sketch of the history of ichthyology in America to the year 1850. Copeia . 1964; 1964(1):33-41.) and the first North American contribution to Amazonian fishes is Gill (1858Gill TN. Synopsis of the fresh water fishes of the western portion of the island of Trinidad, W. I. Ann Lyceum Nat Hist New York. 1858; 6:363-430.) who describes some species occurring in the basin (Corydoras aeneus, Hemigrammus unilineatus, and Odontostilbe pulchra), but on the basis of species collected on the Island of Trinidad (= Trinidad and Tobago). The first solid North American contribution to the taxonomy of Amazonian fish fauna only comes with Cope (1870Cope ED. Contribution to the ichthyology of the Marañon. Proc Am Philos Soc. 1870; 11(81):559-70.), who describes several species from the Upper Amazon.

The vast majority of authors from this period never set foot in the Amazon. One notable exception was the expedition of German naturalists Johann Baptist von Spix and Carl Friedrich von Martius to Brazil in 1817, part of the Austrian Mission. They traveled to Brazil along with a team of other scientists accompanying the Austrian Archduchess Caroline Josepha Leopoldine von Habsburg-Lothringen, on her way to marry then prince D. Pedro de Alcântara (later Emperor Pedro I of Brazil). Supported by the Portuguese crown, the two naturalists travelled through Brazil for two years collecting specimens, mainly from the Amazon. Spix returns to Europe after that period and prepares a series of plates of the fishes collected but dies before completing the publication. His work is then continued by Louis Agassiz in his Doctoral Thesis and finally published as Spix, Agassiz (1829-1831Spix JB Von, Agassiz L. Selecta genera et species piscium quos in itinere per Brasiliam Annis MDCCCXVII-MDCCCXX jussu et auspiciis Maximiliani Josephi I. Monachii: Typis Wolf; 1829-31. Pt 1, i-xvi + i-ii + 1-82, Pt 2, 83-138.). A total of 52 species of South American and Amazonian freshwater fishes are described, including some of the most common and commercially important taxa, such as Prochilodus nigricans Spix, Agassiz, 1829; Schizodon fasciatus Spix, Agassiz, 1829; Brycon amazonicus (Spix, Agassiz, 1829); Serrasalmus nigricans (Spix, Agassiz, 1829); Rhaphiodon vulpinus Spix, Agassiz, 1829; Hoplerythrinus unitaeniatus (Spix, Agassiz, 1829); Boulengerella cuvieri (Spix, Agassiz, 1829); Pinirampus pirinampu (Spix, Agassiz, 1829); Astronotus ocellatus (Agassiz, 1831) and Cichla monoculus Spix, Agassiz, 1831.

Among the entourage of Archduchess Leopoldine was also a young Johann Natterer, who stayed in Brazil for 18 years collecting specimens from a variety of organisms in the rivers Amazonas, Negro and Paraguay and in Southeastern Brazil (Böhlke et al., 1978Böhlke JE, Weitzman SH, Menezes NA. Estado atual da sistemática dos peixes de água doce da América do Sul. Acta Amazon. 1978; 8(4):657-77.). His material was sent to the Vienna Museum and served as basis for a series of descriptions of Amazonian cichlids by Jakob Heckel and of characiforms and siluriforms by Rudolf Kner. As pointed out by Böhlke et al. (1978Böhlke JE, Weitzman SH, Menezes NA. Estado atual da sistemática dos peixes de água doce da América do Sul. Acta Amazon. 1978; 8(4):657-77.), Natterer was the first explorer in South America who did not restrict his attention to large-sized species and his discovery of smaller components of the ichthyofauna represented a major breakthrough in the knowledge of the biodiversity in the continent. That fact, plus his attention to record precise locality data have set new and improved standards in the taxonomy of neotropical fishes.

Another naturalist who was in the Amazon during that period was Francis de Castelnau, who led an official scienti fic expedition by the French government to Brazil in 1843 to 1847. Castelnau (1855Castelnau FL. Poissons. Animaux nouveaux ou rares recueillis pendant l’expédition dans les partes Centrales de l’Amérique du Sud, de Rio de Janeiro a Lima, et de Lima au Pará; exécutée par ordre du gouvernement Français pendant les années 1843 a 1847. Paris: Chez P. Bertrand; 1855. [pt. 7], t.2: pt.1 (1855), Poissons.) describes several Amazonian fishes discovered during that trip, mainly siluriforms and cichlids (e.g. Brachyplatystoma rousseauxii, Liposarcus pardalis, Parancistrus aurantiacus, Pseudacanthicus spinosus, Crenicichla lacustris, Geophagus proximus, Mesonauta acora, Retroculus lapidifer and others). In that work, Castelnau compares the fish fauna of the Amazon with that of the La Plata basin: «Sous le rapport de la distribution géographique, je dirai qu’en général tous les poissons du bassin de l’Amazone me semblent différer spécifiquement de ceux des eaux de la Plata» (Castelnau, 1855: p. IV); «et que les poissons du bassin de l’Amazone semblent différer presque toujours de ceux qui habitent les affluents de la Plata» (Castelnau, 1855Castelnau FL. Poissons. Animaux nouveaux ou rares recueillis pendant l’expédition dans les partes Centrales de l’Amérique du Sud, de Rio de Janeiro a Lima, et de Lima au Pará; exécutée par ordre du gouvernement Français pendant les années 1843 a 1847. Paris: Chez P. Bertrand; 1855. [pt. 7], t.2: pt.1 (1855), Poissons.: X). Thus, Castelnau is one of the first scientists to recognize the pronounced faunistic differences between the Amazon and other South American drainages.

The most important naturalist to travel and collect in the Amazon in that period was Louis Agassiz, head of the famous Thayer Expedition (1865-1866). In Europe, Agassiz was one of the chief critics of Darwin’s recently-published evolutionary theories. Agassiz believed that a research trip to study Amazonian fishes would reveal data to support his own creationist views. Reports of that trip were written by his wife and published in Agassiz, Agassiz (1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.). Some authors criticize the superficiality of that narrative (cf. Vanzolini, 1996Vanzolini PE. A contribuição Zoológica dos primeiros naturalistas viajantes no Brasil. Revista USP. 1996; (30):190-238.), but the work is still a rich source of information and new ideas about Amazonian fishes. As noted by Böhlke et al. (1978Böhlke JE, Weitzman SH, Menezes NA. Estado atual da sistemática dos peixes de água doce da América do Sul. Acta Amazon. 1978; 8(4):657-77.), Louis Agassiz was the first to understand the immense magnitude of Amazonian ichthyofauna, especially among the small-size components. The total bewilderment and marvelous surprise before the vastness of Amazonian fish diversity is evident in several passages of Agassiz, Agassiz (1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.): “You see that before having ascended the Amazons for one third of its course, the number of fishes is more than triple that of all the species known thus far, and I begin to perceive that we shall not do more than skim over the surface of the centre of this great basin” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.: letter to Pimenta-Bueno: 195). Agassiz was one of the greatest ichthyologists of his time and his appreciation of Amazonian fish diversity derived from a broad know ledge of other regions in the world: “I will not return to the surprising variety of species of fishes contained in this basin, though it is very difficult for me to familiarize myself with the idea that the Amazons nourishes nearly twice as many species as the Mediterranean, and a larger number than the Atlantic, taken from one pole to the other.” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.: letter to the Emperor: 382); “Another side of this subject, still more curious perhaps, is the intensity with which life is manifested in these waters. All the rivers of Europe united, from the Tagus to the Volga, do not nourish one hundred and fifty species of fresh-water fishes; and yet, in a little lake near Manaos, called Lago Hyanuary, the surface of which covers hardly four or five hundred square yards, we have discovered more than two hundred distinct species, the greater part of which have not been observed elsewhere. What a contrast! (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.: letter to the Emperor: 383).

Regardless of deeper ideological motivations of Agassiz at the beginning of his expedition, his bewilderment in face of Amazonian biodiversity unsettled him enough to incite reflections about the patterns of geographical distribution in South American fishes and their underlying causes: “Something is already known. It is ascertained that the South American rivers possess some fishes peculiar to them. Were these fishes then created in these separate water-systems as they now exist, or have they been transferred thither from some other water-bed? If not born there, how did they come there? Is there, or has there ever been, any possible connection between these water-systems? Are their characteristic species repeated elsewhere?” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.: 10). These reflexions make Agassiz the founder of the biogeography of Amazonian fishes (Fig. 1) and probably of South American fishes as a whole. Usually, the starting point of the field is considered to be Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) (cf. Buckup, 1999Bucukp PA. Sistemática e biogeografia de peixes de riachos. In: Caramaschi EP, Mazzoni R, Bizerril CRSF, Peres-Neto PR, editores. Ecologia de Peixes de Riachos: estado atual e perspectivas. Rio de Janeiro: Programa de Pós-Graduação em Ecologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro; 1999. p.91-138. (Oecologia Brasiliensis; v. 6).; Ribeiro et al., 2011Ribeiro AC, Lima FCT, Menezes NA. Biogeografia dos peixes de água doce da América do Sul. In: Carvalho CJB, Almeida EAB, editors. Biogeografia da América do Sul: Padrões e Processos. São Paulo: Editora Roca; 2011. p.261-276.), but it is clear that Agassiz was the actual pioneer in the biogeography of fishes in the continent. Agassiz was also the first to notice that the Amazon is formed by distinct icthyofaunistic provinces: “… every day showing more clearly how distinctly the species are localized, and that this immense basin is divided into numerous zoological areas, each one of which has its own combination of fishes” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.: 241-242); “I will not fatigue you with my ichthyological researches; let me only add, that the fishes are not uniformly spread over this great basin. I have already acquired the certainty that we must distinguish several ichthyological faunae very clearly characterized” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.: letter to Milne Edwards: 221). Such insightful remarks were made almost half a century before Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.), the first author to explicitly divide the Amazon basin in different ichthyofaunistic regions.

Agassiz recognizes, again pioneeringly, that the Amazonian fish community is not homogeneously distributed in rivers: “I do not expect to find a single species of the Lower Amazons above Tabatinga” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.: 10). In a footnote in the same page, there is a commentary corroborating that hypothesis: “This anticipation was more than confirmed by the result of the journey. It is true that Mr. Agassiz did not go beyond the Peruvian frontier, and therefore could not verify his prophecy in that region. But he found the localization of species in the Amazons circumscribed within much narrower limits than he expected, the whole length of the great stream, as well as its tributaries, being broken up into numerous distinct faunae. There can be no doubt that what is true for nearly three thousand miles of its course is true also for the head-waters of the Amazons; indeed, other investigators have already described some species from its higher tributaries differing entirely from those collected upon this expedition” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.: 10-11). As noted by Eigenman, Eigenmann (1891Eigenmann CH, Eigenmann RS. A catalogue of the fresh-water fishes of South America. Proc U S Natl Mus. 1891; 14(842):1-81.), the pattern described by Agassiz is not specific to the Amazon basin, and is in fact a phenomenon common to all aquatic environments, both freshwater and marine: “This is nothing more than what is to be observed at a given locality of many rivers or along most coasts” (Eigenmann, Eigenmann, 1891Eigenmann CH, Eigenmann RS. A catalogue of the fresh-water fishes of South America. Proc U S Natl Mus. 1891; 14(842):1-81.: 12). So, Agassiz observations on the Amazon may have been the first to identify a worldwide pattern of distributional heterogeneity (Eigenman, Eigenmann, 1891Eigenmann CH, Eigenmann RS. A catalogue of the fresh-water fishes of South America. Proc U S Natl Mus. 1891; 14(842):1-81.).

Meanwhile, Agassiz also recognizes that there are species with narrowly endemic distributions and others, less numerous, with widespread geographical ranges: “My anticipations as to the distribution of fishes are confirmed; the river is inhabited by several very distinct ichthyological faunae, which have, as a common link, only a very small number of species to be met with everywhere” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868., letter to the Emperor: 203-304); and “Thus far I have met but a small number of species having a very extensive area of distribution. One of those is the Sudis gigas, found almost everywhere” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868., letter to Milne Edwards: 219). Eigenmann, Eigenmann (1891Eigenmann CH, Eigenmann RS. A catalogue of the fresh-water fishes of South America. Proc U S Natl Mus. 1891; 14(842):1-81.) have a critical view of the extreme endemism preconized by Agassiz, attributing it to misinterpretations of the morphological variation in the fishes he studied and that he ignored the fact that many of the referred species had already been described by other researchers from other regions. Indeed, the Eigenmanns were correct in their criticism because the narrow endemicity preconized by Agassiz was never confirmed in the Amazon and most of the species therein have broad distributions.

Agassiz is also the first to report on lateral migration of species, highlighting the relevance of drought-flood cycles in the distribution of the ichthyofauna: “The wanderings of the Amazonian fishes are rather a result of the alternate widening and contracting of their range by the rise and fall of the waters, than of a migratory habit; and may be compared to the movements of those oceanic fishes which, at certain seasons, seek the shoals near the shore, while they spend the rest of the year in deeper waters” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.: 345).

Equally pioneering was Agassiz’s attempt to test the importance of migration as an explanation for the distribution of Amazonian fishes. He and assistants collected fishes in the same areas in different seasons. According to him, results show that the fish assembly did not change through time and thus were not the result of migration from one region to another: “As far as these comparisons have gone, they show that the distinct faunæ of the above-named localities are not the result of migrations; for not only have different fishes been found in all these basins at the same time, but at different times the same fishes have been found to recur in the same basins, whenever the fishing was carried on, not merely in favored localities, but as far as possible over the whole area indiscriminately, in deep and shoal waters. Should it prove that at Pará, as well as at the intervening stations, after an interval of six months, the fishes are throughout the same as when we ascended the river, the evidence against the supposed extensive migrations of the Amazonian fishes will certainly be very strong” (Agassiz, Agassiz, 1868: 347); also “I have been frequently told here that the fishes were very nomadic, the same place being occupied at different seasons of the year by different species. My own investigations have led me to believe that these reports are founded on imperfect observations, and that the localization of species is more distinct and permanent in these waters than has been supposed” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.: 344). Although based on a limited time-scale, this line of thought distinguishes Agassiz from all other authors who advanced ideas on the subject (e.g. Eigenmann, Haseman, Darlington, Myers, Géry, Weitzman, Weitzman, etc.) and sets him apart as the only authors in the school of thought here called non-dispersalist.

It is not clear how Agassiz expected his Amazonian explorations to reveal data supporting his anti-evolutionist ideas. The ideas recorded in Agassiz, Agassiz (1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.) are mostly pertinent observations and thoughts on the patterns found. It is also difficult to kow whether and to what degree his anti-evolutionist stance was influenced by his biogeographical observations in the Amazon. But the following passage from Agassiz, Agassiz (1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.) indicates that they did not change much: “This is among the most remarkable instances of what I would call the arbitrary character of geographical distribution. Such facts cannot be explained by any theory of accidental dispersion, for the upper mountain rivulets, in which these great rivers take their rise, have no connection with each other; nor can any local circumstance explain the presence of some species in all the three basins, while others appear only in one, or perhaps in two, and are absent from the third, or the fact that certain species inhabiting the head-waters of these streams are never found in their lower course when the descent would seem so natural and so easy. In the absence of any positive explanation, we are left to assume that the distribution of animal life has primary laws as definite and precise as those which govern anything else in the system of the universe” (Agassiz, Agassiz, 1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.: 12). This is one of the few passages where Agassiz, Agassiz (1868Agassiz L, Agassiz ECC. A journey in Brazil. Boston: Ticknor and Fields; 1868.) express a more “abstract” view on fish distribution, and one which does not refer specifically to the Amazon, but to the fact that different fish species show different distributions. Although succeeding in recognizing several features of fish distribution, Agassiz failed in identifying their origins and maintained his belief in abstract forces controlling biological patterns.

The expedition led by Agassiz was rich in ideas, but its most lasting contribution to ichthyology was actually the thousands of fish specimens sampled, which was considered by Eigenmann, Eigenmann (1890Eigenmann CH, Eigenmann RS. A revision of the South American Nematognathi or cat-fishes. Occas Pap Calif Acad Sci. 1890; (1):1-508.) as the richest fish collection yet done in South America. The Thayer expedition was the first to have as main objective the collection of South American fishes (Böhlke et al., 1978Böhlke JE, Weitzman SH, Menezes NA. Estado atual da sistemática dos peixes de água doce da América do Sul. Acta Amazon. 1978; 8(4):657-77.) and, like Natterer’s expedition, did not restrict its sampling efforts to large-sized species. Therefore, it had great importance in building taxonomic knowledge on small fishes, the most diverse in the Amazon. Such material permitted landmark contributions by C. Eigenmann and F. Steindachner in the second half of the 19th century, forming the basis of Amazonian fish systematics (Myers, 1943Myers GS. Amoenitates biologicae: the influence of Louis Agassiz on the ichthyology of Brazil. Rev Bras Biol. 1943; 3(1):127-33.). Those ichthyologists, incidentally, are still today first and second most prolific authors of Amazonian fish species. Agassiz also sponsored a 30-month sojourn by Steindachner at Harvard to study Thayer expedition material.

From 1848 to 1852, the Amazon was visited by Alfred R. Wallace (accompanied in part of the trip by Henry W. Bates), widely considered as the founder of evolutionary biogeography (George, 1964George W. Biologist philosopher: a study of the life and writings of Alfred Russel Wallace. London: Abelard-Schuman; 1964.; Brown, Lomolino, 1998Brown JH, Lomolino MV. Biogeography. 2nd. Massachusetts: Sinauer Associates, Inc. Publishers; 1998.; Riddle, 2005Riddle BR. Is biogeography emerging from its identity crisis? J Biogeogr . 2005; 32(2):185-86.; Morrone, 2009Morrone JJ. Evolutionary biogeography: an integrative approach with case studies. New York: Columbia University Press ; 2009.). Wallace was the first author to emphasize the importance of recognizing patterns of distribution of animal species in the Amazon: “On this accurate determination of an animal’s range many interesting questions depend. Are very closely allied species ever separated by a wide interval of country? What physical features determine the boundaries of species and of genera? Do the isothermal lines ever accurately bound the range of species, or are they altogether independent of them? None of these questions can be satisfactorily answered till we have the range of numerous species accurately determined” (Wallace, 1852Wallace AR. On the monkeys of the Amazon. Proc Zool Soc London. 1852; 20: 107-10.: 110). At the time, Wallace had yet to discover a mechanism for evolution, but nonetheless began to realize the importance of geographical barriers in the divergence of species. The influence of Amazonian rivers as barriers on terrestrial animals, most notably on birds, was clear to him during that trip (Wallace, 1853Wallace, AR. A narrative of travels on the Amazon and Rio Negro. London: Reeve & Co.; 1853.). In his travel journals and in publications, Wallace made few references to fishes, but in one of them he is the first to observe that water type influenced the fish species composition in different rivers: “Being a black-water river, most of its fishes are different from those found in the Amazon. In fact, in every small river, and in different parts of the same river, distinct kinds are found. The greater part of those which inhabit the Upper Rio Negro are not found near its mouth, where there are many other kinds equally unknown in the clearer, darker, and probably colder waters of its higher branches” (Wallace, 1889Wallace AR. A narrative of travels on the Amazon and Rio Negro: with an account of the native tribes, and observations on the climate, geology, and natural history of the Amazon valley. London, New York, Melbourne: Ward, Lock & Co; 1889.: 325). Wallace’s hypothesis has been perpetuated or corroborated in several subsequent papers (cf. Roberts, 1972Roberts TR. Ecology of fishes in the Amazon and Congo Basins. Bull Mus Comp Zool. 1972; 143(2):117-47.; Kullander, 1986Kullander SO. Cichlid fishes of the Amazon River drainage of Peru. Swedish Museum of Natural History. 1986; 1-431.; Vari, 1988Vari RP. The curimatidae, a lowland Neotropical fish family (Pisces: Characiformes): distribution, endemism, and phylogenetic biogeography. In: Vanzolini PE, Heyer WR, editors. Proceedings of a work-shop on Neotropical distribution patterns. Rio de Janeiro: Academia Brasileira de Ciências; 1988. p.343-377.; Goulding et al., 1988Goulding M, Carvalho ML, Ferreira EG. Rio Negro: rich life in poor waters. The Hague: SPB Academic Publishing; 1988.; Araújo-Lima, Goulding, 1997Araujo-Lima C, Goulding M. So fruitful a fish: ecology, conserva tion and aquaculture of the Amazon’s Tambaqui. New York: Columbia University Press; 1997. (Biology and Resource Management Series).; Saint-Paul et al., 2000Saint-Paul U, Zuanon JA, Villacorta Correa MA, Garcia M, Fabré NN, Berger U, Junk WJ. Fish communities in central Amazonian white- and blackwater floodplains. Environ Biol Fishes. 2000; 57(3):235-50.).

The dispersalist school (late 19th century and 20th century). The first ichthyologist to tackle freshwater fish distribution from an evolutionary perspective was Günther (1880Günther A. An introduction to the study of fishes. Edinburgh: Adam and Charles Black; 1880.). That author was also the first to divide South America into two different ichthyological regions: Tropical American region (equivalent to Neotropical region) and The Patagonian sub-region. The Tropical American region is characterized by the presence of Dipnoi and Gymnotidae (= Gymnotiformes) plus a great diversity of Chromides (= Cichlidae) and Characinidae (= Characiformes). The region is classified in the equatorial zone of the world on the basis of the presence of Siluridae (= Siluriformes) and by the absence of Cypriniformes (thus in the Acyprinoid Division). Günther’s simple classification is remarkably efficient and is still significant today, having survived over a century of additional knowledge on freshwater fish distribution and diversity and on the relationships of the South American continent with other land masses. In that same paper, Günther observes similarities (e.g. Chromides = Cichlidae and Characinidae = Characiformes) between the ichthyofauna of the tropical portion of South America and Africa, suggesting a close connection between those two continents in the past. His hypothesis postulates that the ancestral stock of both continents lived in an intervening land mass across the Atlantic, today submerged. Günther’s (1880Günther A. An introduction to the study of fishes. Edinburgh: Adam and Charles Black; 1880.) idea was subsequently followed by numerous other authors (cf. Eigenmann, Eigenmann, 1891Eigenmann CH, Eigenmann RS. A catalogue of the fresh-water fishes of South America. Proc U S Natl Mus. 1891; 14(842):1-81.; Eigenmann, 1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.; Regan, 1922Regan CT. The distribution of the fishes of the order Ostariophysi. Bijdr Dierkd. 1922; 22(1):203-08.; Gosline, 1944Gosline WA. The problem of the derivation of the South American and African fresh-water fish fauna. An Acad Bras Cienc. 1944; 16(3):211-23.). Although today’s explanation is based on continental plate dynamics rather than land bridges, the hypothesis first proposed by Günther (1880Günther A. An introduction to the study of fishes. Edinburgh: Adam and Charles Black; 1880.) remains valid as a general explanation for the history of part of the biota in African and South America and is in fact one of the paradigms of freshwater fish biogeography (cf. Roberts, 1972Roberts TR. Ecology of fishes in the Amazon and Congo Basins. Bull Mus Comp Zool. 1972; 143(2):117-47.; Novacek, Marshall, 1976Novacek MJ, Marshall LG. Early biogeographic history of ostariophysan fishes. Copeia . 1976; 1976(1):1-12.; Briggs, 1979Briggs JC. Ostariophysan zoogeography: an alternative hypothesis. Copeia . 1979; 1979(1):111-18., 2005Briggs JC. The biogeography of otophysan fishes (Ostariophysi: Otophysi): a new appraisal. J Biogeogr. 2005; 32(2):287-94.; Gayet, 1982Gayet M. Considération sur la phylogénie et la paléobiogéographie des Ostariophysaires. Geobios Mem Spec. 1982; 6:39-52.; Lundberg, 1993Lundberg JG. African-South American freshwater fish clades and continental drift: problems with a paradigm. In: Goldblatt P, editor. In: Biological relationships between Africa and South America. New Haven: Yale University Press ; 1993. p.156-199.; Nakatani et al., 2011Nakatani M, Miya M, Mabuchi K, Saitoh K, Nishida M. Evolution ary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation. BMC Evol Biol. 2011; 11:177.; Chen et al., 2013Chen W-J, Lavoue S, Mayden RL. Evolutionary origin and early biogeography of otophysan fishes (Ostariophysi: Teleostei). Evolution. 2013; 67(8):2218-39.).

Also influential in the biogeographic worldview at this period is Hermann von Ihering, who staunchly defended the existence of past land bridges among earth’s land masses, including between Africa and South America as proposed by Günther (1880Günther A. An introduction to the study of fishes. Edinburgh: Adam and Charles Black; 1880.). Ihering was a severe critic of Wallace’s theory that depth lines were a proxy to establish the boundaries of ancient continents. The controversy between the hypothesis of land bridges and the alternative model of dispersal over present-day land masses forms an interesting parallel with the much later disputes between vicariance and dispersalism in the late 20th century. An emblematic taxon in that controversy is the Galaxiidae, a freshwater fish family with a circum-Antartic distribution. Ihering had a strong opinion on the matter: “Mr. Wallace’s explanation of the distribution of the Lacertidæ through Polynesia as far as the Sandwich Islands by means of a migration across the ocean is just as bold a hypothesis as his attempt to explain the occurrence of identical fresh-water fishes in New Zealand and Patagonia by the transport of their fry on icebergs. To such theories may those adhere who wish to save Wallace’s hypothesis of the stability of the continents and depths of the seas; but one cannot ask unprejudiced scientists to accept such incredible explanations. (Ihering, 1891von Ihering H. On the ancient relations between New Zealand and South America. Trans R Soc N Z. 1891; 24:431-45.: 443)”. Ihering’s ideas were compiled in their more or less final form in Ihering (1907von Ihering H. Archhelenis und Archinotis. Gesammelte Beitrage zur Geschichte der neotropishen Region. Leipzig: Verlag von Wilhelm Engelmann; 1907.), where he proposes that South America was formed by the union of two ancient continents called Archamazonia and Archiplata. The former comprised the central and northern portions of the continent, and the latter contained Southern Brazil, Uruguay, Argentina and Chile. Archiplata was connected in the south to an ancient Antartic continent called Archinotis. The paper also postulates the existence of Archhelenis, a continent that joined East Archamazonia to West Africa.

It is an interesting turn of history that the idea of earth crust stability was first challenged on biological rather than geological grounds. Both Günther’s and Ihering’s theories were based on facts about the distribution of living and fossil organisms that were impossible to explain on a stable surface of the planet. They realized that the geography of life made it virtually certain that continental configurations underwent major changes through time. As to the nature of those changes, there were several possibilities. Their model, land bridges and lost continents, was a solution that seemed least incompatible with the geological paradigm of the time. Of course, the real explanation was continental drift, first advanced in the prescient work of Wegener (1912Wegener A. Die Entstehung der Kontinente und Ozeane. Geol Rundsch. 1912; 3:276-92.) but discredited for over six decades thereafter. Still, Günther’s and Ihering’s conclusions about earth crust dynamism was convincing to biologists in general and their theories were followed, for example, by Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) and Regan (1922Regan CT. The distribution of the fishes of the order Ostariophysi. Bijdr Dierkd. 1922; 22(1):203-08.).

The most lasting contribution by Ihering to the biogeography of neotropical fishes was the conclusion that a single territory may have different historical origins, dynamically and temporally, thus engendering hybrid biotas. The idea is explicit in two passages: “The intimate relations between the fresh water faunas of Africa and Brazil, and the colossal difference which exists between the fresh water faunas of Archamazonia and Archiplata, prove that both territories during the greater part of the Tertiary were separated quite as completely as the two Americas” (Ihering, 1900von Ihering H. The history of Neotropical region. Science. 1900(310); 12:857-64., p. 861); and “Thus Africa offers the same mixture of ancient indigenous elements and Neogene immigrants as Argentina and Southern Brazil, on account of the intrusion of archamazonic immigrants. Had this invasion occurred in the Eocene period, the Cyprinidae would have reached Brazil; supposing it to be Pliocene, these fishes would not have reached Madagascar. Probably Africa received its placental mammals at the same time that the invasion of Cyprinidae into Africa took place, one of the most remarkable events in zoogeography (Ihering, 1900von Ihering H. The history of Neotropical region. Science. 1900(310); 12:857-64.: 863). Such wide-ranging grasp of planetary biogeography was a result of a vast knowledge about both living and fossil organisms and clearly influenced C. Eigenmann in his interpretations about the South American fish fauna (discussed below).

The transition between the 19th and 20th centuries is a period of dramatic increase in knowledge about neotropical fishes in general, and particularly about Amazonian fishes. In that period, dispersal interpretations were broadly adopted as a mechanism of biogeographical explanation, a trend which in zoology was largely determined by the works of C. Darwin and A. Wallace. The context of that time was already fully evolutionary and the dominance of dispersal as an explanation was strongly rooted in then prevailing paradigms about the stability of the earth’s crust and biological centers of origin. Both concepts far predate the 19th century and are inherited from much older pre-evolutionary cultural traditions (Browne, 1983Browne J. The secular ark: studies in the history of biogeography. New Haven: Yale University Press; 1983.; Papavero et al., 1995Papavero N, Llorente-Bousquets J, Espinosa-Organista D. Historia de la biología comparada desde el génesis hasta el siglo de las luces. Ciudad de México: Universidad Nacional Autónoma de México; 1995. vol. 1, Del génesis a la caída del imperio romano de occidente.). In combination, such ideas culminated in the concept that organisms are responsible for their own distribution (cf. Darwin, 1859Darwin C. On the origin of species by means of natural selection, or the preservation of favoured races in the struggle for life. London: John Murray; 1859.; Wallace, 1876Wallace AR. The geographical distribution of animals: with a study of the relations of living and extinct faunas as elucidating the past changes of the Earth’s surface. New York: Harper & Brothers, Publishers; 1876.; Jordan, 1896Jordan DS. The dispersion of fresh-water fishes. In: Jordan DS, editor. Science Sketches. Chicago: A. C. McClurg and Company; 1896. p.83-132.; Simpson, 1953Simpson GG. Evolution and geography: An essay on historical biogeography with special reference to mammals. Eugene: Oregon State University of Higher Education; 1953. (Condon lectures).; Darlington, 1957Darlington P. Zoogeography: the geographical distribution of animals. New York: John Wilwey & Sons, Inc.; 1957.).

One of the greatest ichthyologists at that period, David Starr Jordan, believed that a major part of South American drainages was connected, thus allowing direct passage of species between them: “Prof. John C. Branner calls my attention to a marshy upland which separates the valley of the La Plata from that of the Amazon, and which permits the free movement of fishes from the Paraguay River to the Tapajos. It is well known that through the Cassiquiare River the Rio Negro, another branch of the Amazon, is joined to the Orinoco River. It is thus evident that almost all the waters of eastern South America form a single basin, so far as the fishes are concerned” (Jordan, 1896Jordan DS. The dispersion of fresh-water fishes. In: Jordan DS, editor. Science Sketches. Chicago: A. C. McClurg and Company; 1896. p.83-132.: 120).

It is in this context that the work of Eigenmann, Eigenmann (1891Eigenmann CH, Eigenmann RS. A catalogue of the fresh-water fishes of South America. Proc U S Natl Mus. 1891; 14(842):1-81.) was conceived. That paper was the first to formally search for biogeographical explanations in the Amazon from a dispersalist perspective. Their theoretical vision is explicit in many passages, for example: “The large number of genera found in the Amazons and La Plata which do not occur in the rivers of southeastern Brazil would lead one to conclude that the Amazonian genera reach the La Plata system directly, even if such connections as are known to exist were not known” (Eigenmann, Eigenmann, 1891Eigenmann CH, Eigenmann RS. A catalogue of the fresh-water fishes of South America. Proc U S Natl Mus. 1891; 14(842):1-81.: 20). The Eigenmanns thus became the main architects and propagators of the dispersalist school as applied to Amazonian fishes, a tradition which extended into the 20th century (Fig. 1). It is also interesting to notice, however, that Eigenmann, Eigenmann also hint to the idea that patterns of faunal distribution may be the result of a different past geography, as seen above a result of the influence of H. von Ihering. This idea foreshadows the paradigm later founded by Leon Croizat (Banarescu, 1990Bãnãrescu P. Zoogeography of freshwaters. Wiesbaden: AULA-Verlag; 1990. vol. 1, General distribution and dispersal of freshwater animals.). The Eigenmanns also refine Günther’s model and propose that the Tropical Region should be subdivided into Brazilian (= South American, excepting Patagonian region) and Mexican (= part of Central America) Regions and that the Brazilian sub region should be further divided into nine provinces: (1) Pacific, (2) Andean, (3) Magdalena, (4) Orinoco, (5) Guiana, (6) Amazonian, (7) San Franciscan, (8) Atlantic, (9) La Plata.

Fig. 1
Timeline of most important shifts in the understanding of the biogeography of Amazonian fishes.

The subsequent work of Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) is the most important publication on the biogeography of neotropical fishes in many decades. That paper slightly modifies the previous proposal of Eigenmann, Eigenmann (1891Eigenmann CH, Eigenmann RS. A catalogue of the fresh-water fishes of South America. Proc U S Natl Mus. 1891; 14(842):1-81.) and splits the American continent south of the tropic of Cancer into four different ichthyofaunas (Transition, Mexican, South American and Patagonian). The region “South American” is divisible into the Andean and Brazilian, the latter being formed by nine provinces: Central American, Pacific, Amazon, Trinidad, East Brazilian Plateau, San Franciscan, Coastal, La Plata, Guiana and Magdalena. Interestingly, some of those provinces are not delimited by hydrograhic basin, but rather by the terrain drained by them (e.g. Amazon, East Brazilian Plateau, Guiana). This demonstrated that Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) also considered geology as an important factor in delimiting ichthyofaunistic regions inside the Amazon (Ribeiro et al., 2011Ribeiro AC, Lima FCT, Menezes NA. Biogeografia dos peixes de água doce da América do Sul. In: Carvalho CJB, Almeida EAB, editors. Biogeografia da América do Sul: Padrões e Processos. São Paulo: Editora Roca; 2011. p.261-276.), an idea that underlies the concept that geomorphological processes are more important than present-day basin divides to understand fish distribution.

Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) applies the theory of Archiplata-Archhelenis of Ihering (1907von Ihering H. Archhelenis und Archinotis. Gesammelte Beitrage zur Geschichte der neotropishen Region. Leipzig: Verlag von Wilhelm Engelmann; 1907.) to part of South America. That theory proposed that in the Tertiary, Tropical America was formed by two land masses, Archiguiana and Archamazona, separated by a valley submerged by the sea. The Anden uplift formed the valleys of the Orinoco, Amazonas and rio Paraná, which then begin to be occupied by freshwater. The Amazon, in particular, was colonized by fishes from older regions and became the center of an adaptive radiation which dispersed to other regions: “With the further elevation of the Cordilleras into a continuous barrier and the formation of the Orinoco, Amazon and La Plata valleys through elevation and the debris brought from the land masses, and the development of the enormous fresh-water system occupying these valleys, this system, particularly the Amazon, became colonized from the older land areas and became the center of unparalleled adaptive radiation and a new center for distribution, which it has remained to the present time” (Eigenmann, 1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.: 371).

Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) is the first to distinguish, ichthyologically and biogeographically, the sedimentary basin of the Amazon (Lowlands) from the Brazilian and Guyanan Shields (Highlands), clearly delimiting differences in their geomorphological ages and faunistic colonization: “The lowlands through which these main rivers flow are the youngest part of South America. The parts that first arose out of the sea and became populated with fresh-water fishes were probably two land areas. The one embraces the highlands of Guiana and Northern Brazil, the other the highlands of Brazil east of the Araguay and south of the falls of the Tapajos” (Eigenmann, 1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.: 318). Such Highland/Lowland divide is one of the most strongly corroborated patterns in Amazonian fish distribution in modern works (cf. Jégu, 1992aJégu M. Influência das Alterações Climáticas do Quaternário sobre a distribuição e evolução dos peixes na Amazônia. Congresso Latino-Americano de Genética: Proceedings Rev Bras Genet. 1992a; 15(1):234-37., 1992bJégu M. Variations du niveau marin et distribution des poissons d’eau douce en Amazonie Orientale. In: Marie-Thérèse P, editor. Evolution des littoraux de Guyane et de la zone caraïbe méridionale pendant le quaternaire. Paris: ORSTOM; 1992b. p.281-97. (Colloques et Séminaires).; Ribeiro et al., 2011Ribeiro AC, Lima FCT, Menezes NA. Biogeografia dos peixes de água doce da América do Sul. In: Carvalho CJB, Almeida EAB, editors. Biogeografia da América do Sul: Padrões e Processos. São Paulo: Editora Roca; 2011. p.261-276.; Dagosta, de Pinna, 2017Dagosta FCP, de Pinna M. Biogeography of Amazonian fishes: deconstructing river basins as biogeographic units. Neotrop Ichthyol . 2017; 15(3):e170034. Available from: 10.1590/1982-0224-20170034
https://doi.org/10.1590/1982-0224-201700...
).

In the same paper, Eigenmann also proposes that the fish fauna of the Amazon has a hybrid origin, with lineages from both the Northeast and Southeast of the continent: “These interior rivers, chiefly the Amazons, colonized from the northeast and southeast became themselves the seat of unparalleled adaptive radiation and centers of distribution, as we shall see” (Eigenmann, 1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.: 318). Thus, Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) is clearly the first author to propose a reticulated history to the Amazonian fishes, a hypothesis which has been repeatedly corroborated in recent works and is one of the prevailing paradigms in the biogeography of the basin (cf. Hubert, Renno, 2006Hubert N, Renno JF. Historical biogeography of South American freshwater fishes. J Biogeogr . 2006; 33(8):1414-36.; Ribeiro, 2006Ribeiro AC. Tectonic history and the biogeography of the freshwater fishes from the coastal drainages of eastern Brazil: an example of faunal evolution associated with a divergent continental margin. Neotrop Ichthyol . 2006; 4(2):225-46.; Lima, Ribeiro, 2011Lima FCT, Ribeiro AC. Continental-scale tectonic controls of biogeography and ecology. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes . Berkeley, Los Angeles, London: University of California Press ; 2011. p.145-164.; Dagosta et al., 2014Dagosta FCP, Marinho MMF, Camelier P. A new species of Hyphessobrycon Durbin (Characiformes: Characidae) from the middle rio São Francisco and upper and middle rio Tocantins basins, Brazil, with comments on its biogeographic history. Neotrop Ichthyol . 2014; 12(2):365-75.; Dagosta, de Pinna, 2017Dagosta FCP, de Pinna M. Biogeography of Amazonian fishes: deconstructing river basins as biogeographic units. Neotrop Ichthyol . 2017; 15(3):e170034. Available from: 10.1590/1982-0224-20170034
https://doi.org/10.1590/1982-0224-201700...
).

Haseman (1912Haseman JD. Some factors of geographical distribution in South America. Ann N Y Acad Sci. 1912; 22:9-112.) criticizes most of the proposals by Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.), arguing that the large quantity of taxa in a given region does not imply that it is the center of origin and dispersal of that group. Haseman, however, fails in his attempt to refute Eigenmann’s hypothesis that similarities between the Paraguay and Amazonas were explained by dispersal. To Haseman (1912Haseman JD. Some factors of geographical distribution in South America. Ann N Y Acad Sci. 1912; 22:9-112.) those similar biotas resulted from adaptive parallelism caused by similar environments: “Why have the Paraguayan species remained identical with the Amazonian? Why did not more of the Cichlidae of Rio Guaporé enter the Paraguay? My answer to these questions is that similar environments have produced some similar changes in the same germplasm” (Haseman, 1912Haseman JD. Some factors of geographical distribution in South America. Ann N Y Acad Sci. 1912; 22:9-112.: 71).

Carl Eigenmann publishes a series of papers (Eigenmann 1920Eigenmann CH. The Magdalena basin and the horizontal and vertical distribution of its fishes. Indiana Univ Sci Ser. 1920; (7):21-34., 1921aEigenmann CH. The origin and distribution of the genera of the fishes of South America West of the Maracaibo, Orinoco and Amazon Basins. Proc Am Philos Soc . 1921a; 60(1):1-6., 1921bEigenmann CH. The nature and origin of the fishes of the Pacific slope of Ecuador, Peru and Chile. Proc Am Philos Soc 1921b; 60(4):503-23., 1923Eigenmann CH. The fishes of the Pacific slope of South America and the bearing of their distribution on the history of the development of the topography of Peru, Ecuador and Western Colombia. Am Nat. 1923; 57(650):193-210.) discussing the composition of the ichthyofauna in Trans-Andean drainages, emphasizing the high level of endemism and the conspicuous absence of several lineages in that region. He discusses the origin of the Trans-Andean biota, proposing that it is composed mainly of Amazonian lineages. Although not explicitly stated, Eigenmann’s works also reveal his idea about the importance of the Andean range for the diversification of Trans-Andean fishes and the hypothesis that the diversification of Amazonian lineages predates the Andean uplift. All such hypotheses have been corroborated in subsequent works (cf. Lundberg, Mago-Leccia, 1986Lundberg JG, Mago-Leccia F. A review of Rhabdolichops (Gymnotiformes, Sternopygidae), a genus of South American freshwater fishes, with descriptions of four new species. Proc Acad Nat Sci Philadelphia. 1986; 138(1):53-85.; Lundberg, Aguilera, 2003Lundberg JG, Aguilera O. The late Miocene Phractocephalus catfish (Siluriformes: Pimelodidae) from Urumaco, Venezuela: Additional specimens and reinterpretation as a distinct species. Neotrop Ichthyol . 2003; 1(2):97-109.; Albert et al., 2006Albert JS, Lovejoy NR, Crampton WGR. Miocene tectonism and the separation of cis- and trans-Andean river basins: evidence from Neotropical fishes. J South Am Earth Sci. 2006; 21(1-2):14-27.; Lundberg et al., 2010Lundberg JG, Sabaj Pérez MH, Dahdul WM, Aguilera OA. The Amazonian Neogene fish fauna. In: Hoorn C, Wesselingh F, editors. Amazonia: Landscape and species evolution: A look into the past. West Sussex: Wiley-Blackwell; 2010. p.281-301.; Rodríguez-Olarte et al., 2011Rodríguez-Olarte D, Mojica Corso JI, Taphorn DC. Northern South America: Magdalena and Maracaibo basins. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes . Berkely, Los Angeles, London: University of California Press; 2011. p.243-257.) and highlight Carl Eigenmann’s extraordinary role in the understanding of the biogeography of neotropical fishes, particularly in the Amazon.

A paper remarkably ahead of its time is Pearson (1937Pearson NE. The fishes of the Beni-Mamoré and Paraguay basin, and a discussion of the origin of the Paraguayan fauna. Proc Calif Acad Sci. 1937; 23(4):99-114.), which proposes that the ichthyofaunistic relationships between the Paraguay and Amazon basins were the result of dispersal, with lineages from the latter having colonized the former: “The close resemblance of the fishes of the Paraguay to the enormous and diversified fauna of the Amazon indicates their origin from the Amazonian forms. Furthermore, the nature of the divide between the two basins indicates that the fishes of the Amazon basin have had access to the Paraguay basin (Pearson, 1937Pearson NE. The fishes of the Beni-Mamoré and Paraguay basin, and a discussion of the origin of the Paraguayan fauna. Proc Calif Acad Sci. 1937; 23(4):99-114.: 104). The author offers a modern view of the dynamics of biogeographic barriers and clearly realizes that present-day barriers were not necessarily effective through geological time: “The fishes entered South America sometime during the Tertiary and crossed the low Amazon valley and a highland divide to enter the Paraguay. Other tributaries of the Amazon in addition to the Rio Guaporé seem to have been migratory paths. The falls in the streams flowing from the highlands of Matto Grosso seem to be barriers to free migration at the present time; but the nature of the fishes of the two slopes indicate that the barrier is of recent origin” (Pearson, 1937Pearson NE. The fishes of the Beni-Mamoré and Paraguay basin, and a discussion of the origin of the Paraguayan fauna. Proc Calif Acad Sci. 1937; 23(4):99-114.: 107). Pearson’s work remains today the main reference in the shared ichthyofauna between the Madeira and the Paraguay. Such sharing has been corroborated and reinforced in many recent papers (cf. Kullander, 1986Kullander SO. Cichlid fishes of the Amazon River drainage of Peru. Swedish Museum of Natural History. 1986; 1-431.; Shibatta, Pavanelli, 2005Shibatta OA, Pavanelli CS. Description of a new Batrochoglanis species (Siluriformes, Pseudopimelodidae) from the rio Paraguai basin, State of Mato Grosso, Brazil. Zootaxa . 2005; 1092(1):21-30.; Hubert, Renno, 2006Hubert N, Renno JF. Historical biogeography of South American freshwater fishes. J Biogeogr . 2006; 33(8):1414-36.; Carvalho, Albert, 2011Carvalho TP, Albert JS. The Amazon-Paraguay divide. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes . Berkeley, Los Angeles, London: University of California Press ; 2011. p.193-202.; Ribeiro et al., 2013Ribeiro AC, Jacob RM, Silva RRSR, Lima FCT, Ferreira DC, Ferreira KM, Mariguela TC, Pereira LH, Oliveira C. Distributions and phylogeographic data of rheophilic freshwater fishes provide evidences on the geographic extension of a central-brazilian amazonian palaeoplateau in the area of the present day Pantanal Wetland. Neotrop Ichthyol . 2013; 11(2):319-26.; Ota et al., 2014Ota RP, Lima FCT, Pavanelli CS. A new species of Hemigrammus Gill, 1858 (Characiformes: Characidae) from the rio Madeira and rio Paraguai basins, with a redescription of H. lunatus. Neotrop Ichthyol . 2014; 12(2):265-79.; Dagosta, de Pinna, 2017Dagosta FCP, de Pinna M. Biogeography of Amazonian fishes: deconstructing river basins as biogeographic units. Neotrop Ichthyol . 2017; 15(3):e170034. Available from: 10.1590/1982-0224-20170034
https://doi.org/10.1590/1982-0224-201700...
).

Darlington (1957Darlington P. Zoogeography: the geographical distribution of animals. New York: John Wilwey & Sons, Inc.; 1957.) describes a general pattern of South American freshwater fish distribution in which there would be a decrease in species richness away from the Amazon basin, most strongly southwards. Darlington (1957Darlington P. Zoogeography: the geographical distribution of animals. New York: John Wilwey & Sons, Inc.; 1957.) agrees with Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) that the Amazon was the center of diversity in South America, however differs in considering it as the only center, while Eigenmann proposed various centers “There seems to be only one main South American fauna of true fresh-water fishes, which radiates from the Amazon, and parts which are extended or subtracted or localized or specialized in different places about as would be expected in the diverse habitats of a continent like South America” (Darlington, 1957Darlington P. Zoogeography: the geographical distribution of animals. New York: John Wilwey & Sons, Inc.; 1957.: 72). Once again, Eigenmann’s grasp of the situation is remarkable in foreseeing a hybrid origin for Amazonian fishes, something that escaped Darlington entirely.

As knowledge on South American ichthyology and hydrography improves, it becomes increasingly clear that the traditional dispersalist edifice build by Eigenmann and associated land bridges were not sufficient to explain the patterns of distributions of South American freshwater fishes. The evident complexity of the situation marked the limits of a tradition, and required a new model which integrated multi-layered explanations.

The influence of ecology (middle of 20th century to the present). The publication of Myers (1938Myers GS. Fresh-water fishes and West Indian zoogeography. Annu Rep Board Regents Smithson Inst. 1938; 92:339-364.) is one of the first signs of the fusion between the then prevailing ideas of dispersal with the Harvard school, characterized by a strong ecological penchant. To Myers, freshwater fish lineages must be distinguished according to their tolerance to salinity, a well-known limiting factor to fish distribution. Myers (1947Myers GS. The Amazon and its fishes. Part 2. The Fishes. Aquar J. 1947; 18(7):13-20, 34.) follows the dispersalist tradition established by Eigenmann, underscoring that the Amazon is the largest body of water in a series of gigantic connections in South America, especially with the Orinoco. Myers (1947Myers GS. The Amazon and its fishes. Part 2. The Fishes. Aquar J. 1947; 18(7):13-20, 34.) states that it is possible that a fish to “swim” a large portion of South America with no barriers, a conjecture which, for him, explains the presence of certain species in almost all basins east of the Andes.

Some decades later, papers by J. Géry begin to aggregate a strongly ecological tint in the biogeography of neotropical fishes (Fig. 1). Although still firmly grounded in the dispersalist tradition, Gery’s papers set the tone for the upcoming prevailing view on Amazonian fish biogeography and can be considered as the start of that tradition.

Géry (1962Géry J. Notes on the ichthyology of Surinam and other Guianas. 10. The distribution pattern of the genus Hemibrycon, with a description of a new species from Surinam and an incursion into ecotaxonomy. Bulletin of Aquatic Biology. 1962; 3(28):65-80.) recognizes so-called circumferential pattern (lateral migration between basins) for some species of fish. The author uses as example the distribution of species of the genus Hemibrycon, which occur around Amazonian lowlands, but never in lowlands themselves. To Géry, this pattern is the result of ecological constraints inherent to the taxon, restricted to fast water mountain streams with high oxygen levels. On the other hand, the lateral movement among mountain drainages still resorts to dispersalist theory: “The Characoids (at least) have shown that they can pass readily from one basin to another in a very short time, geologically speaking. In fact, all the great (or reduced) basins are more or less connected by canals or swamps, either permanently or during the rainy season. The less ‘conservative’ of the Characids show a tendency to invade laterally their adjacent basins (by means of these temporary or permanent connections), whereas they are often stopped along their own river by some ecological barrier...” (Géry, 1962Géry J. Notes on the ichthyology of Surinam and other Guianas. 10. The distribution pattern of the genus Hemibrycon, with a description of a new species from Surinam and an incursion into ecotaxonomy. Bulletin of Aquatic Biology. 1962; 3(28):65-80.: 67). The author refers to the old idea of dispersal routes crossing limits of upper reaches of basins, thus allowing range expansions. On the other hand, Géry (1962Géry J. Notes on the ichthyology of Surinam and other Guianas. 10. The distribution pattern of the genus Hemibrycon, with a description of a new species from Surinam and an incursion into ecotaxonomy. Bulletin of Aquatic Biology. 1962; 3(28):65-80.) newly introduces a more modern interpretation applicable to widely distributed species in general, and one which explains their range by opportunistic colonization of suitable habitats. Although seemingly a subtle difference, such idea differs strongly from that of other dispersalists, who considered that species migrated forcedly, always in response to geological events, marine invasions or competition with other taxa. The same view is later defended by Weitzman, Weitzman (1982Weitzman SH, Weitzman MJ. Biogeography and evolutionary diversification in Neotropical freshwater fishes, with comments on the Refugia theory. In: Prance GT, editor. Biological Diversification in the Tropics. New York: Columbia University Press ; 1982. p.403-422.), but without mention to Géry.

Another pioneering hypothesis by Géry (1962Géry J. Notes on the ichthyology of Surinam and other Guianas. 10. The distribution pattern of the genus Hemibrycon, with a description of a new species from Surinam and an incursion into ecotaxonomy. Bulletin of Aquatic Biology. 1962; 3(28):65-80.) proposes that the rio Amazonas itself can act as barrier to some species of fish: “... the lower part of the Amazon itself constituted the best barrier to prevent it from propagating to the south” (Géry, 1962Géry J. Notes on the ichthyology of Surinam and other Guianas. 10. The distribution pattern of the genus Hemibrycon, with a description of a new species from Surinam and an incursion into ecotaxonomy. Bulletin of Aquatic Biology. 1962; 3(28):65-80.: 68). It is clear that Géry (1962Géry J. Notes on the ichthyology of Surinam and other Guianas. 10. The distribution pattern of the genus Hemibrycon, with a description of a new species from Surinam and an incursion into ecotaxonomy. Bulletin of Aquatic Biology. 1962; 3(28):65-80.) starts the realization that the scenario proposed by Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) was no longer sufficient to explain fish distribution. The idea of an Amazon basin freely connected within itself and with neighboring basins is attacked for the first time.

In another paper on the fishes of the rio Araguaia, Géry (1964Géry J. Poissons characoides nouveaux ou non signalés de l’Ilha do Bananal, Brésil. Vie et Milieu. 1964; (S17):447-71.) realizes that the fish fauna of that drainage is composed of three components: endemic species; species shared with the headwaters of the Tocantins and Xingu; and species with closest relatives in the Upper Orinoco and Guyana Shield (e.g. Moenkhausia grandisquamis (Müller, Troschel, 1845)). Although Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) had already suggested a hybrid Amazonian ichthyofauna, Géry (1964Géry J. Poissons characoides nouveaux ou non signalés de l’Ilha do Bananal, Brésil. Vie et Milieu. 1964; (S17):447-71.) was the first to propose the same for a subdrainage (Araguaia) inside the Amazon basin.

In a subsequent paper, Géry (1984Géry J. The fishes of Amazonia. In: Sioli H, editor. The Amazon: Limnology and landscape ecology of a mighty tropical river and its basin. Dordrecht, Boston, Lancaster: Dr. W. Junk Publishers; 1984. p.353-370.) discusses several factors which have contributed to the diversification of fishes in the Amazon. Among those is mention of a lake, which implicitly suggests that the author considered sympatric speciation as a factor in the generation of Amazonian diversity: “The great tertiary lake preceding the Amazon itself may have acted as the present Great Lakes (in Africa, Nicaragua, etc.) do in favoring the so-called “explosive” speciation” (Géry, 1984Géry J. The fishes of Amazonia. In: Sioli H, editor. The Amazon: Limnology and landscape ecology of a mighty tropical river and its basin. Dordrecht, Boston, Lancaster: Dr. W. Junk Publishers; 1984. p.353-370.). This view is similar to that later defended in Frailey et al. (1988Frailey CD, Lavina EL, Rancy A, Souza Filho JP. A proposed Pleistocene/Holocene lake in the Amazon basin and its significance to Amazonian geology and biogeography. Acta Amazon . 1988; 18(3-4):119-43.). Another relevant insight in Géry (1984Géry J. The fishes of Amazonia. In: Sioli H, editor. The Amazon: Limnology and landscape ecology of a mighty tropical river and its basin. Dordrecht, Boston, Lancaster: Dr. W. Junk Publishers; 1984. p.353-370.) is that the ichthyofaunistic similarities between the Brazilian and Guyanan Shields is due to ancient connections predating the formation of the rio Amazonas.

Of all pioneering proposals by Géry, the most important one is the idea about the fragility and evanescence of hydrographic basin limits and their potential for faunistic exchange. This is clearly expressed in Géry (1969Géry J. The fresh-water fishes of South America. In: Fittkau EJ, Illies J, Klinge H, Schwabe GH, Sioli H, editors. Biogeography and ecology in South America. The Hague: Dr. W. Junk N.V.; 1969. p.328-348. (Monographiae Biologicae; 19).: 833): “It is thus naive to believe that fresh-water fishes ‘are almost inescapably confined to their own drainage system”. Géry is therefore the first author after Eigenmann to recognize the great dynamism of South American drainages and its impact on the distribution of fishes.

Roberts (1972Roberts TR. Ecology of fishes in the Amazon and Congo Basins. Bull Mus Comp Zool. 1972; 143(2):117-47.) provides a summary of various geological, behavioral and ecological processes that were directly and indirectly responsible for the diversification of the Amazonian fish fauna. Among those is an original finding that species with conspicuous colors are far more abundant in clear- or blackwater rivers than in whitewater ones, and that water color influenced mechanisms of intraspecific recognition: “At least for the majority of characoids, however (which provide most of the best examples of brilliantly colored fishes both in the Amazon and in the Congo), there is no indication whatever that they are inedible or dangerous in any way to predators. It would seem, although there are no data available to support this, that the brightly colored characins are just as subject to predation as drably colored ones, if not even more. In this respect the colors advertizing their presence are probably a disadvantage. Many of the small, brightly colored Amazonian characins form schools. This is true of the most brilliant characins of all, the neon tetras and cardinal tetras. Most of these brightly colored characins live in black water or clear water igarapés, a habitat that can be highly temporary. Thus, populations frequently are split up or dispersed, and species recognition and schooling habits are probably important means of reconstituting populations” (Roberts, 1972Roberts TR. Ecology of fishes in the Amazon and Congo Basins. Bull Mus Comp Zool. 1972; 143(2):117-47.: 132). Roberts’ (1972Roberts TR. Ecology of fishes in the Amazon and Congo Basins. Bull Mus Comp Zool. 1972; 143(2):117-47.) hypothesis has been repeatedly corroborated and colorful characin species are indeed far more numerous in clear- or blackwater rivers and streams (cf. Bertaco, Carvalho, 2005aBertaco VA, Carvalho TP. New characid fish, Hemigrammus skolioplatus (Characiformes: Characidae) from upper rio Tapajós drainage, Central Brazil. Comun Mus Ciênc PUCRS. 2005a; 18(2):141-50., 2005bBertaco VA, Carvalho TP. A new characid fish, Hyphessobrycon hexasti chos (Characiformes: Characidae) from Chapada dos Parecis, Mato Grosso, Brazil. Neotrop Ichthyol. 2005b; 3(3):439-43.; Carvalho, Bertaco, 2006Carvalho TP, Bertaco VA. Two new species of Hyphessobrycon (Teleostei: Characidae) from upper rio Tapajós basin on Chapada dos Parecis, Central Brazil. Neotrop Ichthyol . 2006; 4(3):301-08.; Lima, Birindelli, 2006Lima FCT, Birindelli JLO. Moenkhausia petymbuaba, a new species of characid from the Sierra do Cachimbo, Rio Xingu basin, Brazil (Characiformes: Characidae). Ichthyol Explor Freshw. 2006; 17(1):53-58.; Lima et al., 2007Lima FCT, Britski HA, Machado FA. A new Moenkhausia (Characiformes: Characidae) from Central Brazil, with comments on the area relationship between the upper rio Tapajós and upper rio Paraguai systems. Aqua, International Journal of Ichthyology. 2007; 13(2):45-54.; Bertaco, Malabarba, 2007Bertaco VA, Malabarba LR. A new species of Hasemania from the upper rio Tapajós drainage, Brazil (Teleostei: Characiformes: Characidae). Copeia. 2007; 2007(2):350-54.; Sousa et al., 2010Sousa LM, Netto-Ferreira AL, Birindelli JLO. Two new species of Moenkhausia Eigenmann (Characiformes: Characidae) from Serra do Cachimbo, Pará, Northern Brazil. Neotrop Ichthyol . 2010; 8(2):255-64.; Bertaco et al., 2011Bertaco VA, Jerep FC, Carvalho FR. A new characid fish, Moenkhausia aurantia (Ostariophysi: Characiformes: Characidae), from the upper rio Tocantins basin in Central Brazil. Zootaxa. 2011; 2934:29-38.; Ingenito et al., 2013Ingenito LFS, Lima FCT, Buckup PA. A new species of Hyphessobrycon Durbin (Characiformes: Characidae) from the rio Juruena basin, Central Brazil, with notes on H. loweae Costa & Géry. Neotrop Ichthyol . 2013; 11(1):33-44.; Mattox et al., 2013Mattox GMT, Britz R, Toledo-Piza M, Marinho MMF. Cyanogaster noctivaga, a remarkable new genus and species of miniature fish from the Rio Negro, Amazon basin (Ostariophysi: Characidae). Ichthyol Explor Freshw . 2013; 23(4):297-318.; Netto-Ferreira et al., 2013Netto-Ferreira AL, Birindelli JLO, Sousa LM, Mariguela TC, Oliveira C. A new miniature characid (Ostariophysi: Characiformes: Characidae), with phylogenetic position inferred from morphological and molecular data. PLoS ONE. 2013; 8(1): e52098.; Marinho et al., 2014Marinho MMF, Dagosta FCP, Birindelli JLO. Hemigrammus ataktos: a new species from the rio Tocantins basin, central Brazil (Characiformes: Characidae). Neotrop Ichthyol . 2014; 12(2):257-64.; Pastana, Dagosta, 2014Pastana MNL, Dagosta FCP. Moenkhausia rubra, a new species from rio Juruena, upper rio Tapajós basin, Brazil (Characiformes: Characidae). Neotrop Ichthyol . 2014. 12(2):389-96.; Dagosta et al., 2015Dagosta FCP, Marinho MMF, Benine RC. A new species of Moenkhausia Eigenmann (Characiformes: Characidae) from the upper rio Juruena basin, Central Brazil. Zootaxa . 2015; 4032(4):417-25.; Ohara, Lima, 2015Ohara WM, Lima FCT. Hyphessobrycon lucenorum (Characiformes: Characidae), a new species from the rio Madeira basin, Rondônia State, Brazil. Zootaxa . 2015; 3972(4):562-72.).

In a paper on the cichlid fishes of Peru, Kullander (1986Kullander SO. Cichlid fishes of the Amazon River drainage of Peru. Swedish Museum of Natural History. 1986; 1-431.) recognizes some biogeographical patterns in the Western Amazon, such as the Highlands and Lowlands, and suggests the Western Amazon as an area of endemism. The author offers important considerations about Amazonian biogeography and the role of ecological constraints on the distribution of species, confirming Géry’s (1962Géry J. Notes on the ichthyology of Surinam and other Guianas. 10. The distribution pattern of the genus Hemibrycon, with a description of a new species from Surinam and an incursion into ecotaxonomy. Bulletin of Aquatic Biology. 1962; 3(28):65-80.) hypothesis. Kullander (1986Kullander SO. Cichlid fishes of the Amazon River drainage of Peru. Swedish Museum of Natural History. 1986; 1-431.) also suggests the possible ichthyofaunistic hybridism of the rio Solimões. Kullander implicitly proposes speciation under character displacement as a possible mechanism in the generation of the diversity of Amazonian fishes: “Overlapping distribution and lack of phylogenetic data precludes detailed analysis of Bujurquina distribution. Sympatry indicates dispersal, but it may be significant that syntopic occurrence of Bujurquina species is a rare phenomenon, recorded only for B. labiosa and B. robusta. These two species differ greatly in mouth structures, suggesting different feeding niches. Competitive interaction might be taken to be responsible for much of the habitat separation in Bujurquina species, and the group may be an example of Morphological modifications and biotope selectivity may have been inforced rather by eventual sympatry than by isolation” (Kullander, 1986Kullander SO. Cichlid fishes of the Amazon River drainage of Peru. Swedish Museum of Natural History. 1986; 1-431.: 35).

Jégu, Keith (1999Jégu M, Keith P. Le bas Oyapock limite septentrionale ou simple étape de la progression de la faune des poissons d’Amazonie occidentale. C R Acad Sci, Ser Gen Vie Scie. 1999; 322(12):1133-45.) describe a pattern where there is a decrease in species diversity from Central Amazon towards its mouth and the rivers of French Guyana. The authors support their observations mainly on species of Serrasalmidae and explain the pattern by ecological and behavioral processes.

Menezes (1972Menezes NA. Distribuição e origem da fauna de peixes de água doce das grandes bacias de fluviais do Brasil. In: Branco SM, organizador. Poluição e Piscicultura. São Paulo: Faculdade de Saúde Pública da USP e Instituto de Pesca; 1972. p.73-78.), on the basis of Brazilian drainages only, empirically tests Eigenmann’s (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) theory on the role of the Amazon as a center of origin and dispersal for the neotropical fish fauna, corroborating it. Although the coefficients used by the author are simple, they constitute the first instance of explicit testing of a biogeographic hypothesis in the Amazon. A similar approach was employed by Géry (1984Géry J. The fishes of Amazonia. In: Sioli H, editor. The Amazon: Limnology and landscape ecology of a mighty tropical river and its basin. Dordrecht, Boston, Lancaster: Dr. W. Junk Publishers; 1984. p.353-370.). Both works were later criticized by Vari (1988Vari RP. The curimatidae, a lowland Neotropical fish family (Pisces: Characiformes): distribution, endemism, and phylogenetic biogeography. In: Vanzolini PE, Heyer WR, editors. Proceedings of a work-shop on Neotropical distribution patterns. Rio de Janeiro: Academia Brasileira de Ciências; 1988. p.343-377.) for not offering evidence for the temporal sequence of events which generated the patterns described.

Menezes (1969Menezes NA. Systematics and evolution of the tribe Acestrorhynchini (Pisces, Characidae). Arq Zool. 1969; 18(1-2):1-150., 1976Menezes NA. On the Cynopotaminae, a new subfamily of Characidae (Osteichthyes, Ostariophysi, Characoidei). Arq Zool . 1976; 28(2):1-91.) explain the ichthyofaunistic differences between Amazonian Highlands and Lowlands from a dispersalist angle in which species are forced to move (Fig. 2a). The author suggests that the Acestrorhynchini and Cynopotaminae radiated in the Amazon and that more derived younger forms “pushed” less derived older species towards the periphery by competition: “The Amazon Basin remains the place where adaptive innovations (and consequently radiations) occur. The forms generated there tend to push the older species towards the periphery where they remain, at least for a time, in marginal ecologies” (Menezes, 1976Menezes NA. On the Cynopotaminae, a new subfamily of Characidae (Osteichthyes, Ostariophysi, Characoidei). Arq Zool . 1976; 28(2):1-91.:19). Those are the first papers to discuss fish distribution in view of their evolutionary relationships and can be considered as transitional between the dispersalist and vicariant phases of the biogeography of Amazonian fishes (Fig. 1). Although not explicitly phylogenetic because of their temporal frame, Menezes’ works foreshadow the upcoming paradigm that biogeographic hypotheses must be based on knowledge about evolutionary relationships.

Fig. 2
a) Traditional dispersalist hypothesis (e.g. Menezes, 1969Menezes NA. Systematics and evolution of the tribe Acestrorhynchini (Pisces, Characidae). Arq Zool. 1969; 18(1-2):1-150., 1976Menezes NA. On the Cynopotaminae, a new subfamily of Characidae (Osteichthyes, Ostariophysi, Characoidei). Arq Zool . 1976; 28(2):1-91.) in which basal species are forced to move to the periphery. Distribution of derived species indicated the location of the center of origin of its lineage. b) Willi Hennig’s hypothesis in which the primitive species retained their geographic position while younger ones spread towards the periphery. Distribution of primitive species indicated the location of the center of origin of its lineage.

Transition to vicariant school (late 20th century). For centuries, dispersalism prevailed as an explanation for the geographical distribution of organisms on earth (Crisci et al., 2003Crisci JV, Katinas L, Posadas P. Historical biogeography: an introduction. Cambridge: Harvard University Press; 2003.), an intellectual tradition that can be traced as far back as Old-Testament myths in the Pentateuch (Browne, 1983Browne J. The secular ark: studies in the history of biogeography. New Haven: Yale University Press; 1983.; Papavero et al., 1995Papavero N, Llorente-Bousquets J, Espinosa-Organista D. Historia de la biología comparada desde el génesis hasta el siglo de las luces. Ciudad de México: Universidad Nacional Autónoma de México; 1995. vol. 1, Del génesis a la caída del imperio romano de occidente.). In the evolutionary era, such tradition was adapted but not discarded. In the evolutionary dispersalist tradition it was generally accepted that more derived younger species forced the displacement of primitive older ones towards the periphery of their range. Thus, the distribution of derived species indicated the location of the center of origin of its lineage. The work of Willi Hennig (Hennig, 1950Hennig W. Grundzüge einer Theorie der phylogenetischen Systematik. Berlin: Deutscher Zentralverlag; 1950., 1966Hennig W. Phylogenetic systematics. Urbana: University of Illinois Press; 1966.), although revolutionary in proposing a new phylogenetic theory, largely followed the dispersalist paradigm in biogeography. Contrary to the mainstream (but not originally so), for Hennig the relative position of derived and primitive species were inverted: the latter retained their geographic position while younger ones spread towards the periphery (Fig. 2b). Therefore, the most primitive members of a lineage indicated its center of origin. The same view was adopted in Brundin (1966Brundin L. Transantarctic relationships and their significance, as evidenced by chironomid midges. With a monograph of the subfamilies Podonominae and Aphro-teniinae and the Austral Heptagyiae. Stockholm: Almqvist & Wiksell; 1966. (Kungl. Svenska vetenskapsakademiens handlingar; No. 1).), one of the landmark works on biogeography of the 20th century. The multiplicity of criteria to locate the center of origin of a group had been previously compiled by Cain (1944Cain SA. Foundations of plant geography. New York: Harper & Brothers Publishers; 1944.), who pointed out that many of them were contradictory and permitted widely divergent hypotheses about the geographic origins of a group. Although Cain had all elements to challenge the dispersalist paradigm, he curiously did not do so and failed to come up with a theoretical alternative (Nelson, Platnick, 1981Nelson G, Platnick N. Systematics and biogeography: cladistics and vicariance. New York: Columbia University Press ; 1981.).

A real shift comes with the work of L. Croizat (Croizat, 1958Croizat L. Panbiogeography or an introductory synthesis of zoogeography, phytogeography, and geology; with notes on evolution, systematics, ecology, anthropology, etc. Caracas: Published by the author; 1958., 1964Croizat L. Space, time, form: the biological synthesis. Caracas: Published by the author ; 1964.) which frontally attacks the idea of center of origin, and therefore the dispersalist paradigm, in proposing to replace it with panbiogeography and its motto that “life and earth evolve together”. Towards the late 1970’s and early 1980’s, Croizat’s panbiogeography was combined with Hennig’s phylogenetic theory to form the vicariant school of biogeography (e.g. Croizat et al., 1974Croizat L, Nelson G, Rosen DE. Centers of origin and related concepts. Syst Zool. 1974; 23(2):265-87.; Bãnãrescu, 1990Bãnãrescu P. Zoogeography of freshwaters. Wiesbaden: AULA-Verlag; 1990. vol. 1, General distribution and dispersal of freshwater animals.). That period also saw the rise of modern plate tectonics, which provided a dynamic geological setting particularly suitable as a background for the vicariant paradigm. Although Hennig was clearly a dispersalist thinker and failed to see the full biogeographic potential of his phylogenetic theory, his work was a key element in the collapse of the dispersalist edifice.

The development and application of vicariant biogeography (Rosen, 1976Rosen DE. A vicariance model of Caribbean biogeography. Syst Zool . 1976; 24(4):431-64., 1978Rosen DE. Vicariant patterns and historical explanation in biogeography. Syst Zool . 1978; 27(2):159-88.; Nelson, Rosen, 1979Nelson O, Rosen DE. Vicariance biogeography: a critique. New York: Columbia University Press ; 1979.; Nelson, Platnick, 1981Nelson G, Platnick N. Systematics and biogeography: cladistics and vicariance. New York: Columbia University Press ; 1981.; Humphries, Parenti, 1985Humphries CJ, Parenti LR. Cladistic biogeography. Oxford: Oxford University Press; 1986., 1999Humphries CJ, Parenti LR. Cladistic biogeography: interpreting patterns of plant and animal distributions. 2nd ed. Oxford: Oxford University Press ; 1999. (Oxford Biogeography Series; v. 12).; Ebach, Tangney, 2007Ebach MC, Tangney RS. Biogeography in a changing world. Boca Raton: CRC Press; 2006.; Williams, Ebach, 2008Williams DM, Ebach MC. Foundations of systematics and biogeography. New York: Springer Science, Business Media; 2008.; Parenti, Ebach, 2009Parenti LR, Ebach MC. Comparative biogeography: discovering and classifying biogeographical patterns of a dynamic. Berkeley: University of California Press; 2009.), allowed the development of quantitative methods for the study of coevolution between organisms and their areas, on the basis of explicitly phylogenetic hypotheses. Dispersalist models were quickly replaced by vicariant biogeography. The latter was perceived as a more efficient way to study historical biogeography, since it identified general patterns of distribution and their general explanations (Rosen, 1976Rosen DE. A vicariance model of Caribbean biogeography. Syst Zool . 1976; 24(4):431-64.). Such paradigm shift brought closer interaction between biology and geology which in Rosen’s vision (Rosen, 1978Rosen DE. Vicariant patterns and historical explanation in biogeography. Syst Zool . 1978; 27(2):159-88.) were “reciprocal illuminators”. The new vicariant perspective also begins to erode the relevance of ecology as a source of biogeographic explanation, because it was seen as providing only local specific criteria of species distributions, rather than a source of general biogeographic hypotheses.

The first explicitly phylogenetic work to deal with Amazonian fishes was Vari (1977Vari RP. Notes on the characoid subfamily Iguanodectinae, with a description of a new species. Am Mus Novit. 1977; (2612):1-6.) and the first paper to discuss Amazonian fish biogeography from a vicariant perspective was Weitzman, Weitzman (1982Weitzman SH, Weitzman MJ. Biogeography and evolutionary diversification in Neotropical freshwater fishes, with comments on the Refugia theory. In: Prance GT, editor. Biological Diversification in the Tropics. New York: Columbia University Press ; 1982. p.403-422.) (Fig. 1). On the basis of the distribution and phylogenetic relationships of the genera Carnegiella (Gasteropelecidae) and Nannostomus (Lebiasinidae), Weitzman, Weitzman try to correlate the patterns found with Refuge Theory (Haffer, 1969Haffer J. Speciation in Amazonian forest birds. Science. 1969; 165(3889):131-37., 1982Haffer J. General aspects of the refuge theory. In: Prance GT, editor. Biological diversification in the tropics. New York: Columbia University Press ; 1982. p.6-24.; Prance, 1982Prance GT. Biological Diversification in the Tropics. New York: Columbia University Press ; 1982.). The authors conclude that if there is any relation between refuges and the diversification of the studied genera, it happens at the population level or, at most, between closely related species. Weitzman, Weitzman also warns about the need of greater evolutionary, taxonomic and distributional knowledge before more accurate biogeographic hypotheses can be formulated. In what concerns the Amazon, the main conclusion of their paper is that the diversification of its fish fauna is pre-Pleistocenic, dismissing Haffer’s Refuge Theory as an explanation for that diversity. Such views contradict a long chain of authors who considered the diversification of amazonian fishes as a recent phenomenon, largely associated with the Andean uplift (cf. Eigenmann, 1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.; Géry, 1969Géry J. The fresh-water fishes of South America. In: Fittkau EJ, Illies J, Klinge H, Schwabe GH, Sioli H, editors. Biogeography and ecology in South America. The Hague: Dr. W. Junk N.V.; 1969. p.328-348. (Monographiae Biologicae; 19)., 1984Géry J. The fishes of Amazonia. In: Sioli H, editor. The Amazon: Limnology and landscape ecology of a mighty tropical river and its basin. Dordrecht, Boston, Lancaster: Dr. W. Junk Publishers; 1984. p.353-370.; Roberts, 1972Roberts TR. Ecology of fishes in the Amazon and Congo Basins. Bull Mus Comp Zool. 1972; 143(2):117-47., 1975Roberts TR. Characoid fish teeth from Miocene deposits in the Cuenca Basin, Ecuador. J Zool. 1975; 175(2):259-71.; Brooks et al., 1981Brooks DR, Thorson TB, Mayes MA. Fresh-water stingrays (Potamotrygonidae) and their helminth parasites: Testing hypotheses of evolution and coevolution. In: Funk VA, Brooks DR, editors. Advances in Cladistics, Proceedings of the First Meeting of the Willi Hennig Society. New York: New York Botanical Garden; 1981. p.147-175.; Frailey et al., 1988Frailey CD, Lavina EL, Rancy A, Souza Filho JP. A proposed Pleistocene/Holocene lake in the Amazon basin and its significance to Amazonian geology and biogeography. Acta Amazon . 1988; 18(3-4):119-43.). Weitzman, Weitzman’s (1982Weitzman SH, Weitzman MJ. Biogeography and evolutionary diversification in Neotropical freshwater fishes, with comments on the Refugia theory. In: Prance GT, editor. Biological Diversification in the Tropics. New York: Columbia University Press ; 1982. p.403-422.) hypothesis has been largely corroborated in subsequent work (cf. Lundberg et al., 1986Lundberg JG, Mago-Leccia F. A review of Rhabdolichops (Gymnotiformes, Sternopygidae), a genus of South American freshwater fishes, with descriptions of four new species. Proc Acad Nat Sci Philadelphia. 1986; 138(1):53-85., 1988Lundberg JG, Linares OJ, Antonio ME, Nass P. Phractocephalus hemiliopterus (Pimelodidae, Siluriformes) from the upper Miocene Urumaco Formation, Venezuela: A further case of evolutionary stasis and local extinction among South American fishes. J Vertebr Paleontol. 1988; 8(2):131-38., 2010Lundberg JG, Sabaj Pérez MH, Dahdul WM, Aguilera OA. The Amazonian Neogene fish fauna. In: Hoorn C, Wesselingh F, editors. Amazonia: Landscape and species evolution: A look into the past. West Sussex: Wiley-Blackwell; 2010. p.281-301.; Vari, 1988Vari RP. The curimatidae, a lowland Neotropical fish family (Pisces: Characiformes): distribution, endemism, and phylogenetic biogeography. In: Vanzolini PE, Heyer WR, editors. Proceedings of a work-shop on Neotropical distribution patterns. Rio de Janeiro: Academia Brasileira de Ciências; 1988. p.343-377.; Lundberg, Chernoff, 1992Lundberg JG, Chernoff B. A Miocene fossil of the amazonian fish Arapaima (Teleostei, Arapaimidae) from the Magdalena river region of Colombia: Biogeographic and evolutionary implications. Biotropica. 1992; 24(1):2-14.; Bush, 1994Bush MB. Amazonian speciation: a necessarily complex model. J Biogeogr . 1994; 21(1):5-17.; Lundberg, 1997Lundberg JG. Fishes of the La Venta fauna: additional taxa, biotic and paleoenvironmental implications. In: Kay RF, Madden RH, Cifelli RL, Flynn JJ, editors. Vertebrate Paleontology in the Neotropics: The Miocene Fauna of La Venta, Colombia. Washington (DC): Smithsonian Institution Press; 1997. p.67-91., 2005Lundberg JG. Brachyplatystoma promagdalena, new species, a fossil goliath catfish (Siluriformes: Pimelodidae) from the Miocene of Colombia, South America. Neotrop Ichthyol . 2005; 3(4):597-605.).

Starting in the early 1980’s, Richard Vari begins a series of papers on the taxonomy and phylogenetic relationships of the family Curimatidae (cf. Vari 1982Vari RP. Systematics of the Neotropical characoid genus Curimatopsis (Pisces: Characoidei). Washington (DC): Smithsonian Institution Press ; 1982. (Smithsonian Contributions to Zoology; No. 373).; 1984Vari RP. Systematics of the Neotropical characiform genus Potamorhina (Pisces: Characiformes). Washington (DC): Smithsonian Institution Press ; 1984. (Smithsonian Contributions to Zoology; No. 400).; 1988Vari RP. The curimatidae, a lowland Neotropical fish family (Pisces: Characiformes): distribution, endemism, and phylogenetic biogeography. In: Vanzolini PE, Heyer WR, editors. Proceedings of a work-shop on Neotropical distribution patterns. Rio de Janeiro: Academia Brasileira de Ciências; 1988. p.343-377.; 1989aVari RP. Systematics of the Neotropical characiform genus Pseudocurimata Fernández-Yépez (Pisces: Ostariophysi). Washington (DC): Smithsonian Institution Press ; 1989a. (Smithsonian Contributions to Zoology; No. 490).; 1989bVari RP. Systematics of the Neotropical characiform genus Curimata Bosc (Pisces: Characiformes). Washington (DC): Smithsonian Institution Press ; 1989b. (Smithsonian Contributions to Zoology; No. 474).; 1989cVari RP. Systematics of the Neotropical characiform genus Psectrogaster Eigenmann and Eigenmann (Pisces: Characiformes). Washington (DC): Smithsonian Institution Press ; 1989c. (Smithsonian Contributions to Zoology; No. 481).; 1989dVari RP. A phylogenetic study of the Neotropical characiform family Curimatidae (Pisces: Ostariophysi). Washington (DC): Smithsonian Institution Press ; 1989d. (Smithsonian Contributions to Zoology; No. 471).; 1991Vari RP. Systematics of the Neotropical characiform genus Steindachnerina Fowler (Pisces: Ostariophysi). Washington (DC): Smithsonian Institution Press ; 1991. (Smithsonian Contributions to Zoology; No. 507).; 1992aVari RP. Systematics of the Neotropical Characiform genus Cyphocharax Fowler (Pisces: Ostariophysi). Washington (DC): Smithsonian Institution Press ; 1992a. (Smithsonian Contributions to Zoology; No. 529).; 1992bVari RP. Systematics of the Neotropical characiform genus Curimatella Eigenmann and Eigenmann (Pisces: Ostariophysi), with summary comments on the Curimatidae. Washington (DC): Smithsonian Institution Press ; 1992b. (Smithsonian Contributions to Zoology; No. 533).). Having built detailed information on the distribution and phylogenetic relationships among species, Vari includes biogeographic discussions in many of those works. As a side product, maps of distributions included in several of those taxonomic revisions served as templates for general distribution patterns today known for Amazonian fishes (e.g., Vari, 1988Vari RP. The curimatidae, a lowland Neotropical fish family (Pisces: Characiformes): distribution, endemism, and phylogenetic biogeography. In: Vanzolini PE, Heyer WR, editors. Proceedings of a work-shop on Neotropical distribution patterns. Rio de Janeiro: Academia Brasileira de Ciências; 1988. p.343-377.).

Vari (1988Vari RP. The curimatidae, a lowland Neotropical fish family (Pisces: Characiformes): distribution, endemism, and phylogenetic biogeography. In: Vanzolini PE, Heyer WR, editors. Proceedings of a work-shop on Neotropical distribution patterns. Rio de Janeiro: Academia Brasileira de Ciências; 1988. p.343-377.) is the first author to propose a hybrid origin for the Amazon on the basis of phylogenetic relationships of its taxa, showing that different taxa indicate different historical connections. The author also points out to importance of ecological preferences (water type, current speed etc.) and behaviors (migration, vagility) in the distribution of species. The most relevant contribution of that work is the defense of biogeography as a predictive discipline, as long as it is associated with phylogenetic hypotheses. Vari demonstrates that the diversification of the Curimatidae happened before the Andean uplift, confirming the hypothesis by Weitzman, Weitzman (1982Weitzman SH, Weitzman MJ. Biogeography and evolutionary diversification in Neotropical freshwater fishes, with comments on the Refugia theory. In: Prance GT, editor. Biological Diversification in the Tropics. New York: Columbia University Press ; 1982. p.403-422.) and at the same time contradicting various previous authors (e.g., Eigenmann, 1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.; Géry, 1969Géry J. The fresh-water fishes of South America. In: Fittkau EJ, Illies J, Klinge H, Schwabe GH, Sioli H, editors. Biogeography and ecology in South America. The Hague: Dr. W. Junk N.V.; 1969. p.328-348. (Monographiae Biologicae; 19)., 1984; Roberts, 1972Roberts TR. Ecology of fishes in the Amazon and Congo Basins. Bull Mus Comp Zool. 1972; 143(2):117-47.). Vari (1988Vari RP. The curimatidae, a lowland Neotropical fish family (Pisces: Characiformes): distribution, endemism, and phylogenetic biogeography. In: Vanzolini PE, Heyer WR, editors. Proceedings of a work-shop on Neotropical distribution patterns. Rio de Janeiro: Academia Brasileira de Ciências; 1988. p.343-377.) thus underscores the relevance of understanding phylogenetic relationships in order to understand the biogeography of neotropical fishes, a view reiterated in Vari, Weitzman (1990).

Other relevant contributions of that period include Jégu (1992aJégu M. Influência das Alterações Climáticas do Quaternário sobre a distribuição e evolução dos peixes na Amazônia. Congresso Latino-Americano de Genética: Proceedings Rev Bras Genet. 1992a; 15(1):234-37., 1992bJégu M. Variations du niveau marin et distribution des poissons d’eau douce en Amazonie Orientale. In: Marie-Thérèse P, editor. Evolution des littoraux de Guyane et de la zone caraïbe méridionale pendant le quaternaire. Paris: ORSTOM; 1992b. p.281-97. (Colloques et Séminaires).), which propose that the diversification of rheophilic especies in the Eastern Amazon during the Quaternary was determined by sea level fluctuations and associated droughts. On the basis of a pattern of the exclusive sharing of some groups of Characiformes, those papers also propose a biogeographical pattern for the Eastern Amazon involving prior connections between the Brazilian and Guyana Shields, similar to the one previously proposed by Géry (1964Géry J. Poissons characoides nouveaux ou non signalés de l’Ilha do Bananal, Brésil. Vie et Milieu. 1964; (S17):447-71.). Differently from the latter author however, Jégu (1992bJégu M. Variations du niveau marin et distribution des poissons d’eau douce en Amazonie Orientale. In: Marie-Thérèse P, editor. Evolution des littoraux de Guyane et de la zone caraïbe méridionale pendant le quaternaire. Paris: ORSTOM; 1992b. p.281-97. (Colloques et Séminaires).) for the first time proposes a vertical correspondence among shield rivers «Les évènements ayant été à l’origine de ces phénomènes semblent avoir opéré indépendamment dans le bas Amazone, au niveau du Tocantins-Xingu et du Jari d’une part, et dans le moyen Amazone, au niveau du Tapajos et du Trombetas d’autre part» (Jégu, 1992bJégu M. Variations du niveau marin et distribution des poissons d’eau douce en Amazonie Orientale. In: Marie-Thérèse P, editor. Evolution des littoraux de Guyane et de la zone caraïbe méridionale pendant le quaternaire. Paris: ORSTOM; 1992b. p.281-97. (Colloques et Séminaires).: 284). Jégu (1992bJégu M. Variations du niveau marin et distribution des poissons d’eau douce en Amazonie Orientale. In: Marie-Thérèse P, editor. Evolution des littoraux de Guyane et de la zone caraïbe méridionale pendant le quaternaire. Paris: ORSTOM; 1992b. p.281-97. (Colloques et Séminaires).) describes a pattern of lateral migration between shield basins, similar to that by Géry (1962Géry J. Notes on the ichthyology of Surinam and other Guianas. 10. The distribution pattern of the genus Hemibrycon, with a description of a new species from Surinam and an incursion into ecotaxonomy. Bulletin of Aquatic Biology. 1962; 3(28):65-80., 1969Géry J. The fresh-water fishes of South America. In: Fittkau EJ, Illies J, Klinge H, Schwabe GH, Sioli H, editors. Biogeography and ecology in South America. The Hague: Dr. W. Junk N.V.; 1969. p.328-348. (Monographiae Biologicae; 19).). Again, however, the author differs in being explicit about a vicariant explanation for the pattern: «La dispersion est/ouest, tant entre les affluents de la marge nord de l’Amazone qu’entre ceux de la marge sud, ne peut donc s’expliquer que par le morcellement d’une aire de distribution commune» (Jégu, 1992bJégu M. Variations du niveau marin et distribution des poissons d’eau douce en Amazonie Orientale. In: Marie-Thérèse P, editor. Evolution des littoraux de Guyane et de la zone caraïbe méridionale pendant le quaternaire. Paris: ORSTOM; 1992b. p.281-97. (Colloques et Séminaires).: 285).

Starting in the middle of the 1980’s, a growing number of taxonomic revisions and phylogenetic hypotheses is published for different groups of Amazonian fishes (e.g.Mago-Leccia et al., 1985Mago-Leccia F, Lundberg JG, Baskin JN. Systematics of the South American freshwater fish genus Adontosternarchus (Gymnotiformes, Apteronotidae). Contributions in Science. 1985; (358):1-19.; Weitzman, Fink, 1985Weitzman SH, Fink SV. Xenurobryconin phylogeny and putative pheromone pumps in glandulocaudine fishes (Teleostei: Characidae). Washington (DC): Smithsonian Institution Press ; 1985. (Smithsonian Contributions to Zoology; No. 421).; Kullander, 1986Kullander SO. Cichlid fishes of the Amazon River drainage of Peru. Swedish Museum of Natural History. 1986; 1-431.; Lundberg et al., 1986Lundberg JG, Mago-Leccia F. A review of Rhabdolichops (Gymnotiformes, Sternopygidae), a genus of South American freshwater fishes, with descriptions of four new species. Proc Acad Nat Sci Philadelphia. 1986; 138(1):53-85.; Stewart, 1985Stewart DJ. A review of the South American catfish tribe Hoplomyzontini (Pisces, Aspredinidae), with descriptions of new species from Ecuador. Fieldiana, Zool. 1985; (25):1-19., 1986Stewart DJ. Revision of Pimelodina and description of a new genus and species from the Peruvian Amazon (Pisces: Pimelodidae). Copeia . 1986; 1986(3):653-67.; Ferraris, 1988Ferraris CJ, Jr. Relationships of the Neotropical catfish genus Nemuroglanis, with a description of a new species (Osteichthyes: Siluriformes: Pimelodidae). Proc Biol Soc Wash. 1988; 101(3):509-16.). This marks the beginning of modern understanding about the taxonomy, distribution and phylogenetic relationships of Amazonian fishes. At the same time, publications start on various trans-Andean fossils that can be identified as belonging to typically Amazonian lineages, thus for the first time allowing a firm temporal framework for the biogeography of Amazonian fishes (cf. Lundberg et al., 1986Lundberg JG, Machado-Allison A, Kay RF. Miocene characid fishes from Colombia: Evidence for evolutionary stasis and extirpation in the South American ichthyofauna. Science. 1986; 234(4773):208-09., 1988Lundberg JG, Linares OJ, Antonio ME, Nass P. Phractocephalus hemiliopterus (Pimelodidae, Siluriformes) from the upper Miocene Urumaco Formation, Venezuela: A further case of evolutionary stasis and local extinction among South American fishes. J Vertebr Paleontol. 1988; 8(2):131-38.; Lundberg, Chernoff, 1992Lundberg JG, Chernoff B. A Miocene fossil of the amazonian fish Arapaima (Teleostei, Arapaimidae) from the Magdalena river region of Colombia: Biogeographic and evolutionary implications. Biotropica. 1992; 24(1):2-14.; Lundberg, 1997Lundberg JG. Fishes of the La Venta fauna: additional taxa, biotic and paleoenvironmental implications. In: Kay RF, Madden RH, Cifelli RL, Flynn JJ, editors. Vertebrate Paleontology in the Neotropics: The Miocene Fauna of La Venta, Colombia. Washington (DC): Smithsonian Institution Press; 1997. p.67-91., 2005Lundberg JG. Brachyplatystoma promagdalena, new species, a fossil goliath catfish (Siluriformes: Pimelodidae) from the Miocene of Colombia, South America. Neotrop Ichthyol . 2005; 3(4):597-605.; Sabaj Pérez et al., 2007Sabaj Pérez MH, Aguilera OAS, Lundberg JG. Fossil catfishes of the families Doradidae and Pimelodidae (Teleostei: Siluriformes) from the Miocene Urumaco Formation of Venezuela. Proc Acad Nat Sci Philadelphia . 2007; 156:157-94.). Furthermore, if such fossils were not known, our understanding of the biogeographical history of the region would be severely incomplete or incorrect, since they belongs to typically lowland Amazonian lineages which inhabit regions currently lacking any Amazonian connection, such as Magdalena and Caribbean coastal rivers from the northern coast of Venezuela: Arapaima, Brachyplatystoma, Colossoma, Doras, Hydrolycus, Phractocephalus and others (Lundberg et al., 1986Lundberg JG, Machado-Allison A, Kay RF. Miocene characid fishes from Colombia: Evidence for evolutionary stasis and extirpation in the South American ichthyofauna. Science. 1986; 234(4773):208-09., 1988Lundberg JG, Linares OJ, Antonio ME, Nass P. Phractocephalus hemiliopterus (Pimelodidae, Siluriformes) from the upper Miocene Urumaco Formation, Venezuela: A further case of evolutionary stasis and local extinction among South American fishes. J Vertebr Paleontol. 1988; 8(2):131-38., 2010Lundberg JG, Sabaj Pérez MH, Dahdul WM, Aguilera OA. The Amazonian Neogene fish fauna. In: Hoorn C, Wesselingh F, editors. Amazonia: Landscape and species evolution: A look into the past. West Sussex: Wiley-Blackwell; 2010. p.281-301.; Lundberg, 1997Lundberg JG. Fishes of the La Venta fauna: additional taxa, biotic and paleoenvironmental implications. In: Kay RF, Madden RH, Cifelli RL, Flynn JJ, editors. Vertebrate Paleontology in the Neotropics: The Miocene Fauna of La Venta, Colombia. Washington (DC): Smithsonian Institution Press; 1997. p.67-91., 2005Lundberg JG. Brachyplatystoma promagdalena, new species, a fossil goliath catfish (Siluriformes: Pimelodidae) from the Miocene of Colombia, South America. Neotrop Ichthyol . 2005; 3(4):597-605.; Sabaj Pérez et al., 2007Sabaj Pérez MH, Aguilera OAS, Lundberg JG. Fossil catfishes of the families Doradidae and Pimelodidae (Teleostei: Siluriformes) from the Miocene Urumaco Formation of Venezuela. Proc Acad Nat Sci Philadelphia . 2007; 156:157-94.; G. Ballen, personal communication). These tertiary fossils demonstrate that such regions were in the past also part of the lowland Amazonian basin.

The reciprocal illuminators (late 20th century to today). A new phase of biogeographical studies on neotropical fishes begins with Lundberg et al. (1998Lundberg JG, Marshall LG, Guerrero J, Horton B, Malabarba MCS, Wesselingh F. The stage for Neotropical fish diversification: a history of tropical South American rivers. In: Malabarba LR, Reis RE, Vari RP, Lucena ZM, Lucena CAS, editors. Phylogeny and Classification of Neotropical Fishes. Porto Alegre: Edipucrs; 1998. p.13-48.) (Fig. 1). That paper compiles and revises the main geological features of South America and their implications for the history of the ichthyofauna. It allows the interpretation of biogeographical patterns in light of geomorphological knowledge previously scattered in myriad isolated specialized publications. Lundberg et al. (1998Lundberg JG, Marshall LG, Guerrero J, Horton B, Malabarba MCS, Wesselingh F. The stage for Neotropical fish diversification: a history of tropical South American rivers. In: Malabarba LR, Reis RE, Vari RP, Lucena ZM, Lucena CAS, editors. Phylogeny and Classification of Neotropical Fishes. Porto Alegre: Edipucrs; 1998. p.13-48.) triggers a flood of papers following similar lines (e.g. Albert et al., 2006Albert JS, Lovejoy NR, Crampton WGR. Miocene tectonism and the separation of cis- and trans-Andean river basins: evidence from Neotropical fishes. J South Am Earth Sci. 2006; 21(1-2):14-27.; Hubert, Renno, 2006Hubert N, Renno JF. Historical biogeography of South American freshwater fishes. J Biogeogr . 2006; 33(8):1414-36.; Lovejoy et al., 2006Lovejoy NR, Albert JS, Crampton WGR. Miocene marine incursions and marine/freshwater transitions: evidence from Neotropical fishes. J South Am Earth Sci . 2006; 21(1-2):5-13., 2010Lovejoy NR, Willis SC, Albert JS. Molecular signatures of Neogene biogeographic events in the Amazon fish fauna. In: Hoorn CM, Wesselingh FP, editors. Amazonia, Landscape and Species Evolution . Oxford, UK: Blackwell Publishing. 2010; p.405-417.; Hubert et al., 2007Hubert N, Duponchelle F, Nuñez J, Garcia-Dávila C, Paugy D, Renno JF. Phylogeography of the piranha genera Serrasalmus and Pygocentrus: Implications for the diversification of the Neotropical ichthyofauna. Mol Ecol. 2007; 16(10):2115-36.; Sabaj et al., 2007Sabaj Pérez MH, Aguilera OAS, Lundberg JG. Fossil catfishes of the families Doradidae and Pimelodidae (Teleostei: Siluriformes) from the Miocene Urumaco Formation of Venezuela. Proc Acad Nat Sci Philadelphia . 2007; 156:157-94.; Albert, Carvalho, 2011Albert JS, Carvalho TP. Neogene assembly of modern faunas. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes. Berkeley, Los Angeles, London: University of California Press; 2011. p.119-136.; Bloom, Lovejoy, 2011Bloom DD, Lovejoy NR. The biogeography of marine incursions in South America. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes. Berkeley, Los Angeles, London: University of California Press ; 2011. p.137-144.; Carvalho, Albert, 2011Carvalho TP, Albert JS. The Amazon-Paraguay divide. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes . Berkeley, Los Angeles, London: University of California Press ; 2011. p.193-202.; Salcedo et al., 2011Salcedo NJ, Rodriguez D, Strauss RE, Baker RJ. The Fitzcarrald Arch: A vicariant event for Chaetostoma (Siluriformes: Loricariidae) speciation? Copeia . 2011; 2011(4):503-12.; Schaefer, 2011Schaefer S. The Andes: Riding the Tectonic Uplift. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes . Berkely, Los Angeles, London: University of California Press ; 2011. p.259-278.; Winemiller, Willis, 2011Winemiller KO, Willis SC. The Vaupes Arch and Casiquiare Canal: barriers and passages. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes . Berkeley, Los Angeles, London: University of California Press ; 2011. p.225-242.; Mariguela et al., 2013Mariguela TC, Alexandrou MA, Foresti F, Oliveira C. Historical biogeography and cryptic diversity in the Callichthyinae (Siluriformes, Callichthyidae). J Zool Syst Evol Res. 2013; 51(4):308-15.; Ribeiro et al., 2013Ribeiro AC, Jacob RM, Silva RRSR, Lima FCT, Ferreira DC, Ferreira KM, Mariguela TC, Pereira LH, Oliveira C. Distributions and phylogeographic data of rheophilic freshwater fishes provide evidences on the geographic extension of a central-brazilian amazonian palaeoplateau in the area of the present day Pantanal Wetland. Neotrop Ichthyol . 2013; 11(2):319-26.; Slobodian, Bockmann, 2013Slobodian V, Bockmann FA. A new Brachyrhamdia (Siluriformes: Heptapteridae) from Rio Japurá basin, Brazil, with comments on its phylogenetic affinities, biogeography and mimicry in the genus. Zootaxa . 2013; 3717(1):1-22.; Ivanyisky, Albert, 2014Ivanyisky SJ III, Albert JS. Systematics and biogeography of Sternarchellini (Gymnotiformes: Apteronotidae): Diversification of electric fishes in large Amazonian rivers. Neotrop Ichthyol . 2014; 12(3):565-84.; Roxo et al., 2014Roxo FF, Albert JS, Silva GSC, Zawadzki CH, Foresti F, Oliveira C. Molecular phylogeny and biogeographic history of the armored Neotropical catfish subfamilies Hypoptopomatinae, Neoplecostominae and Otothyrinae (Siluriformes: Loricariidae). PLoS ONE . 2014; 9(8):e105564.; Silva et al., 2014Silva GSC, Roxo FF, Britzke R, Oliveira C. New species of the Pseudancistrus barbatus group (Siluriformes, Loricariidae) with comments on its biogeography and dispersal routes. ZooKeys. 2014; 406:1-23.; Ribeiro, Menezes, 2015 Ribeiro AC, Menezes NA. Phylogenetic relationships of the species and biogeography of the characid genus Oligosarcus Günther. 1864 (Ostariophysi, Characiformes, Characidae). Zootaxa . 2015; 3949(1):41-81.and many others). Most of those contributions focus on specific biogeographical patterns and some introduce analytical approaches in their analyses (e.g.Hubert, Renno, 2006Hubert N, Renno JF. Historical biogeography of South American freshwater fishes. J Biogeogr . 2006; 33(8):1414-36.; Albert, Carvalho, 2011Albert JS, Carvalho TP. Neogene assembly of modern faunas. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes. Berkeley, Los Angeles, London: University of California Press; 2011. p.119-136.; Schaefer, 2011Schaefer S. The Andes: Riding the Tectonic Uplift. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes . Berkely, Los Angeles, London: University of California Press ; 2011. p.259-278.; Mariguela et al., 2013Mariguela TC, Alexandrou MA, Foresti F, Oliveira C. Historical biogeography and cryptic diversity in the Callichthyinae (Siluriformes, Callichthyidae). J Zool Syst Evol Res. 2013; 51(4):308-15.; Roxo et al., 2014Roxo FF, Albert JS, Silva GSC, Zawadzki CH, Foresti F, Oliveira C. Molecular phylogeny and biogeographic history of the armored Neotropical catfish subfamilies Hypoptopomatinae, Neoplecostominae and Otothyrinae (Siluriformes: Loricariidae). PLoS ONE . 2014; 9(8):e105564.). Three publications deserve especial mention because they offer original synthetic views which consolidate the current trend in the biogeography of Amazonian fishes: Lundberg et al. (2010Lundberg JG, Sabaj Pérez MH, Dahdul WM, Aguilera OA. The Amazonian Neogene fish fauna. In: Hoorn C, Wesselingh F, editors. Amazonia: Landscape and species evolution: A look into the past. West Sussex: Wiley-Blackwell; 2010. p.281-301.), Ribeiro (2006Ribeiro AC. Tectonic history and the biogeography of the freshwater fishes from the coastal drainages of eastern Brazil: an example of faunal evolution associated with a divergent continental margin. Neotrop Ichthyol . 2006; 4(2):225-46.) and Lima, Ribeiro (2011Lima FCT, Ribeiro AC. Continental-scale tectonic controls of biogeography and ecology. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes . Berkeley, Los Angeles, London: University of California Press ; 2011. p.145-164.). The first one presents a new interpretation of the reasons which made the Amazon basin megadiverse. Following Ashton (1969Ashton PS. Speciation among tropical forest trees: some deductions in the light of recent evidence. Biol J Linn Soc Lond. 1969; 1(1-2):155-96.), the authors concur that there is no evidence for accelerated speciation rates in the basin, but that its sheer size helped to protect species from large-scale extinction events. Accordingly, the large diversity in the Amazon would be a consequence of the summation of multiple lineages through time: “... there are a number of prevailing conditions in the Amazon that could buffer species from basin-wide extinction. Area matters, and the Amazon is vast... A fauna experiencing low extinction rates and ‘normal’ speciation rates would become rich over time” (Lundberg et al., 2010Lundberg JG, Sabaj Pérez MH, Dahdul WM, Aguilera OA. The Amazonian Neogene fish fauna. In: Hoorn C, Wesselingh F, editors. Amazonia: Landscape and species evolution: A look into the past. West Sussex: Wiley-Blackwell; 2010. p.281-301.).

Along a different perspective, Ribeiro (2006Ribeiro AC. Tectonic history and the biogeography of the freshwater fishes from the coastal drainages of eastern Brazil: an example of faunal evolution associated with a divergent continental margin. Neotrop Ichthyol . 2006; 4(2):225-46.) and Lima, Ribeiro (2011Lima FCT, Ribeiro AC. Continental-scale tectonic controls of biogeography and ecology. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes . Berkeley, Los Angeles, London: University of California Press ; 2011. p.145-164.) offered a view of the hydrographic basins in South America and their fish fauna which is far more complex than previously thought. They recognized that hydrographic basins should not be seen as areas of endemism, but rather as hybrid historical units which were fragmented and/or exchanged biotic fractions from adjacent basins caused by a series of events at different times. Although this idea was already implicit in Eigenmann (1909Eigenmann CH. The fresh-water fishes of Patagonia and an examination of the Archiplata-Archhelenis theory. In: Scott WB, editor. Reports of the Princeton University Expeditions to Patagonia 1896-1899. Princeton: Princeton University; 1909. vol. 3, Zöology, pt. 3; p.293-374.) and Géry (1964Géry J. Poissons characoides nouveaux ou non signalés de l’Ilha do Bananal, Brésil. Vie et Milieu. 1964; (S17):447-71.), the proposals of Ribeiro (2006Ribeiro AC. Tectonic history and the biogeography of the freshwater fishes from the coastal drainages of eastern Brazil: an example of faunal evolution associated with a divergent continental margin. Neotrop Ichthyol . 2006; 4(2):225-46.) and Lima, Ribeiro (2011Lima FCT, Ribeiro AC. Continental-scale tectonic controls of biogeography and ecology. In: Albert JS, Reis RE, editors. Historical biogeography of Neotropical freshwater fishes . Berkeley, Los Angeles, London: University of California Press ; 2011. p.145-164.) have great merit in basing their discussions on geological evidence, demonstrating the fragility of hydrographic limits and challenging their use as a basis for delimiting biogeographical areas.

Recently, Dagosta, de Pinna (2017Dagosta FCP, de Pinna M. Biogeography of Amazonian fishes: deconstructing river basins as biogeographic units. Neotrop Ichthyol . 2017; 15(3):e170034. Available from: 10.1590/1982-0224-20170034
https://doi.org/10.1590/1982-0224-201700...
) demonstrated empirically that large Amazonian river drainages and the rio Amazonas basin itself were non-monophyletic and constitute hybrid sets of heterogeneous biotic partitions. Those hydrographic bodies are not cohesive historical units, but rather massively reticulate physical entities, composite in their geology, biology, and chronology.

Past and future. Endler (1982Endler JA. Problems in distinguishing historical from ecological factors in biogeography. Am Zool. 1982; 22(2):441-52.) states that biogeography: “... has become divided into schools which largely ignore one another”. The historical narrative here presented shows that this does not in fact happens with the biogeography of Amazonian fishes. Although it is clear that the two main schools of biogeographical thought (dispersalist and vicariant) had direct implications on the interpretation of Amazonian fish biogeography, the process was gradual and many hypotheses have combined elements from each of the two traditions. Besides, several of the hypotheses which are part of today’s paradigm on the biogeography of Amazonian fishes are based on principles and ideas dating back to the period between the latter half of the 18th century and the first half of the 19th century. That period covers several different biogeographical traditions. As pillars of specific theoretical schools are replaced, specific elements are transmitted into the next paradigm during transition phases, attenuating the paradigm shift and preserving those elements which have demonstrated to have explanatory power.

Although the advent of evolutionary theory has revolutionized biological sciences in general, it has not contributed significantly to a transformation of the knowledge on the biogeography of Amazonian fishes. Its founder, Agassiz, was an anti-Darwinian, but this fact did not blur his vision on the distribution of Amazonian fishes. A reverse situation happens with Hennig (1950Hennig W. Grundzüge einer Theorie der phylogenetischen Systematik. Berlin: Deutscher Zentralverlag; 1950., 1966Hennig W. Phylogenetic systematics. Urbana: University of Illinois Press; 1966.), who revolutionized phylogenetic reconstruction but whose impact on Amazonian fish biogeography was belated. A major revolution in the field happens only in the 1980’s, with the publications of Stanley Weitzman and Richard Vari. Those authors for the first time associated the temporal context of phylogenetic hypotheses with the biogeographical patterns then emerging as a consequence of the pronounced increase in knowledge on the Amazonian ichthyofauna. From its founding in 1868, the biogeography of Amazonian fishes only underwent major theoretical shifts during the last three decades, a development which is still underway.

Vari, Weitzman (1990Vari RP, Weitzman SH. A review of the phylogenetic biogeography of the freshwater fishes of South America. In: Peters G, Hutterer R, editors. Vertebrates in the Tropics. Proceedings of the International Symposium on Vertebrate Biogeography and Systematics in the Tropics. Bonn: Alexander Koenig Zoological Research Institute and Zoological Museum; 1989. p.381-393.) highlighted problems which have delayed proposition of general hypotheses on the phylogenetic biogeography of South American fishes. Those problems were the poor state of knowledge of the species-level systematics of most taxa; inadequate distributional information for most species and the sparse or non-existent data on the phylogenetic history of most supraspecific taxa. Almost three decades later, it is clear that those caveats are being corrected at a fast pace. The biogeography of South American fishes, especially Amazonian ones, should experiment a new age of progress. Recent advances in the knowledge about geographical distribution and a large number of available phylogenetic hypotheses will allow a growing number of large-scale biogeographic analyses, including those based on event models and Bayesian inference. The challenge of those new approaches will depend on their ability to segregate multiple overlapping temporal layers of river basin changes, and to develop analytical tools that can deal with temporal mixing.

Acknowledgments

We thank Flávio Lima, Roberto Reis, Sílvio Nihei and Náercio Menezes for valuable comments on various versions of this manuscript and Gustavo Ballen for information and conversations on fossil South American faunas. We are also deeply indebted to the generosity and friendship of Heraldo Britski, an inexhaustible source of knowledge about neotropical fishes. Authors were funded by FAPESP (FCPD, 2011/23419-1; 2011/50282-7; 2016/07246-3), CNPq (MP) and CAPES (MP). This work was part of the Doctoral Dissertation by the first author, defended in the Graduate Program on Systematics, Animal Taxonomy and Biodiversity of the Museum of Zoology, Universidade de São Paulo. Part of the manuscript was prepared during a sabbatical stay of the second author in the Muséum national d’Histoire naturelle and Université Pierre and Marie Curie (Institut de Systematique, Evolution et Biodiversité), Paris, and the support and hospitality of René Zaragueta-Bagils and Guillaume Lecointre is gratefully acknowledged.

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Edited by

Marcelo Britto

Publication Dates

  • Publication in this collection
    11 Oct 2018
  • Date of issue
    2018

History

  • Received
    28 Feb 2018
  • Accepted
    17 July 2018
Sociedade Brasileira de Ictiologia Neotropical Ichthyology, Núcleo de Pesquisas em Limnologia, Ictiologia e Aquicultura, Universidade Estadual de Maringá., Av. Colombo, 5790, 87020-900, Phone number: +55 44-3011-4632 - Maringá - PR - Brazil
E-mail: neoichth@nupelia.uem.br