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The heterogeneic distribution of Helicobacter pylori cag pathogenicity island reflects different pathologies in multiracial Malaysian population

ABSTRACT

Background:

Helicobacter pylori harbouring cag-pathogenicity island (cagPAI) which encodes type IV secretion system (T4SS) and cagA virulence gene are involved in inflammation of the gastric mucosa. We examined all the 27 cagPAI genes in 88 H. pylori isolates from patients of different ethnicities and examined the association of the intactness of cagPAI region with histopathological scores of the gastric mucosa.

Results:

96.6% (n = 85) of H. pylori isolates were cagPAI-positive with 22.4% (19/85) having an intact cagPAI, whereas 77.6% (66/85) had a partial/rearranged cagPAI. The frequency of cag2 and cag14 were found to be significantly higher in H. pylori isolated from Malays, whereas cag4 was predominantly found in Chinese isolates. The cag24 was significantly found in higher proportions in Malay and Indian isolates than in Chinese isolates. The intactness of cagPAI region showed an association with histopathological scores of the gastric mucosa. Significant association was observed between H. pylori harbouring partial cagPAI with higher density of bacteria and neutrophil activity, whereas strains lacking cagPAI were associated with higher inflammatory score.

Conclusions:

The genotypes of H. pylori strains with various cagPAI rearrangement associated with patients' ethnicities and histopathological scores might contribute to the pathogenesis of H. pylori infection in a multi-ethnic population.

Keywords
Helicobacter pylori; cagPAI; Histopathological scores; Gastric mucosa; Ethinicity

Background

Helicobacter pylori is a Gram-negative, microaerophilic, curved-shaped and flagellated bacterium frequently found in the stomach of humans.11 Graham JR. Helicobacter pylori: human pathogen or simply an opportunist?. Lancet. 1995;345:1095-7. It is an important pathogen that causes gastrointestinal diseases such as chronic gastritis, peptic ulcer, gastric cancer and gastric mucosa-associated lymphoid tissue (MALT) lymphoma,22 Kusters JG, Van Vliet AH, Kuipers EJ. Pathogenesis of Helicobacter pylori infection. Clin Microbiol Rev. 2006;19,449-0.,33 Suerbaum S, Michetti P. Helicobacter pylori infection. N Engl J Med. 2002;347:1175-86. and most infected patients appear asymptomatic. Although H. pylori is designated as type I carcinogen, other factors including environment (lifestyle and diet), host genetics and host immune responses contribute to the disease sequelae in infected patients.44 Wroblewski LE, Peek RM, Wilson KT. Helicobacter pylori and gastric cancer: factors that modulate disease risk. Clin Microbiol Rev. 2010;23:713-39.

5 Compare D, Rocco A, Nardone G. Risk factors in gastric cancer. Eur Rev Med Pharmacol Sci. 2010;14:302-8.
-66 Kim SS, Ruiz VE, Carroll JD, Moss SF. Helicobacter pylori in the pathogenesis of gastric cancer and gastric lymphoma. Cancer Lett. 2010;305:228-38.

Cytotoxin-associated gene pathogenicity island (cagPAI) is one of the major virulence factors associated with disease outcome in infected hosts. It is approximately 40 kb in size consisting of around 28 genes,77 Fischer W, Puls J, Buhrdorf R, Gebert B, Odenbreit S, Hass R. Systematic mutagenesis of the Helicobacter pylori cag pathogenicity island: essential genes for CagA translocation in host cells and induction of interleukin-8. Mol Microbiol. 2001;42:1337-48. encoding mainly CagA protein, type IV secretion system (T4SS) and other genes for induction of host's interleukin-8 (IL-8).77 Fischer W, Puls J, Buhrdorf R, Gebert B, Odenbreit S, Hass R. Systematic mutagenesis of the Helicobacter pylori cag pathogenicity island: essential genes for CagA translocation in host cells and induction of interleukin-8. Mol Microbiol. 2001;42:1337-48.,88 Hatakeyama M. SagA of CagA in Helicobacter pylori pathogenesis. Curr Opin Microbiol. 2008;11:30-7. Studies show that intactness of cagPAI has a significant correlation with disease severity, whereas H. pylori strains with partial deletions within cagPAI region are significantly less pathogenic in nature.99 Nilsson C, Sillén A, Eriksson L, Strand ML, Enroth H, Normark S, et al. Correlation between cag pathogenicity island composition and Helicobacter pylori-associated gastroduodenal disease. Infect Immun. 2003;71:6573-81.,1010 Patra R, Chattopadhyay S, De R, Datta S, Chowdhury A, Ramamurthy T, et al. Intact cag pathogenicity island of Helicobacter pylori without disease association in Kolkata, India. Int J Med Microbiol. 2011;301:293-302. However, the rates of severe disease development vary between human populations, and differences in H. pylori genotypes may partially explain these differences.1111 Bridge DR, Merrel DS. Polymorphism in the Helicobacter pylori CagA and VacA toxins and disease. Gut Microbes. 2013;4:101-17.,1212 Sahara S, Sugimoto M, Vilaichone RK, Mahachai V, Miyajima H, Furuta T, et al. Role of Helicobacter pylori cagA EPIYA motif and vacA genotypes for the development of gastrointestinal diseases in Southeast Asian countries: a meta-analysis. BMC Infect Dis. 2012;1:2223.

Integrity of cagPAI seems to have an important role in the progress of the gastroduodenal disorders, so that intact cagPAI could be seen in H. pylori strains from countries with higher rate of gastric cancer.1313 Lai CH, Perng CL, Lan KH, Lin HJ. Association of detection of virulence gene belonging to cag pathogenicity island in Helicobacter pylori IS605 and cag-PAI of Helicobacter pylori isolated from patients with gastrointestinal diseases in Taiwan. Gastroenterol Res Pract. 2013. Article ID 356217.

14 Abadi ATB. Strategies used by helicobacter pylori to establish persistent infection. World J Gastroenterol. 2017;23:2870.
-1515 Parsonnet J, Friedman GD, Orentreich N, Vogelman H. Risk for gastric cancer in people with CagA positive or CagA negative Helicobacter pylori infection. Gut. 1997;40:297-301. This integrity also has important effect on eliciting inflammatory response in the gastric mucosa.1616 Waskito LA, Miftahussurur M, Lusida MI, Syam AF, Suzuki R, Subsomwong P, et al. Distribution and clinical associations of integrating conjugative elements and cag pathogenicity islands of Helicobacter pylori in Indonesia. Sci Rep. 2018;8:6073. Several studies have investigated the association of H. pylori cagPAI and gastroduodenal diseases.1313 Lai CH, Perng CL, Lan KH, Lin HJ. Association of detection of virulence gene belonging to cag pathogenicity island in Helicobacter pylori IS605 and cag-PAI of Helicobacter pylori isolated from patients with gastrointestinal diseases in Taiwan. Gastroenterol Res Pract. 2013. Article ID 356217.,1717 Khatoon J, Prasad KN, Prakash Rai R, Ghoshal UC, Krishnani N. Association of heterogenicity of Helicobacter pylori cag pathogenicity island with peptic ulcer diseases and gastric cancer. Bri J Biomed Sci. 2017;74:121-6. However, knowledge about the relationship between H. pylori cagPAI intactness and changes of the infected gastric tissue is sparse. More than 90% of H. pylori strains in Malaysia are cagPAI-positive1818 Alfizah H, Rukman AH, Norazah A, Hamizah R, Ramelah M. Ethnicity association of Helicobacter pylori virulence genotype and metronidazole susceptibility. World J Gastroenterol. 2013;19:1283-91. and Malaysia being a multi-ethnic country, the interaction of H. pylori strains with different genotype combined with various host genetics may have an impact on associated disease outcomes.

There is a lack of comprehensive information with regarding intact versus rearranged cagPAI among H. pylori strains in the Malaysian population. Hence, in this study, we characterized the genes within cagPAI to determine the association of various cagPAI structure in H. pylori isolates with histopathological changes of the infected gastric mucosa. The outcome of this study provides valuable conclusions regarding association between presence of cagPAI genes and disease sequelae in strains from multi-ethnic population and associations with different histopathological states.

Methods

Bacterial isolates

A total of 88 non-repetitive H. pylori clinical isolates were obtained from patients (47 females and 41 males) recruited in previous studies (research no. ETP-2013-042 and GUP-2011-307) between 2011-2015. Patients (15 Malays, 52 Chinese and 21 Indians) had a mean age of 54.68 ± 16.87 years ranging from 17 to 83 years. In these projects, gastric biopsies were taken from the antrum and/or corpus of the patients' stomach for H. pylori culture and used as one of the diagnotic methods for determination of the H. pylori infection status in patients. H. pylori isolates grew from the culture method during the studies were stored at −70 °C in Brucella broth containing 15% glycerol. Histopathological examination was performed on gastric biopsies in both studies to detect the presence of H. pylori along with grading for gastritis. H. pylori were subcultured from frozen stock onto Columbia blood agar (Oxoid, Basingstoke, England) supplemented with 7% sheep blood and Dent's supplement (Oxoid, Basingstoke, England) and incubated at 37 °C for five to seven days under microaerophilic environment.

Histopathological examination

Gastric biopsies fixed in 10% formalin and paraffin embedded section were cut and stained with hematoxylin-eosin and, when necessary, sections were also stained with Warthin-Starry for better visualization of H. pylori. All patients had gastritis graded according to Updated Sydney Classification3131 Dixon MF, Genta RM, Yardley JH, Correa P. Classification and grading of gastritis. The updated Sydney System. International Workshop on the Histopathology of Gastritis, Houston 1994. Am J Surg Pathol. 1996;20:1161-81. except in two patients where the histopathological examination (HPE) results were not available. Severity of gastritis was graded from 0 to 3 (none, mild, moderate, and marked).

DNA extraction

H. pylori colonies were scraped from the agar surface of Columbia blood agar plate and subjected to DNA extraction using FavorPrep™ Tissue Genomic DNA Extraction Mini kit according to the manufacturer's instructions (Favorgen Biotech Corporation, Ping-Tung 908, Taiwan). DNA samples were diluted with ultrapure water to a concentration of 25 ng/µl and stored at -20 °C until further processing.

Determination of cagPAI genes

The presence or absence of cagPAI in H. pylori strains was determined by PCR using primers for detection of the 5′ and 3′ flanking region of the cagPAI as described by Olbermann et al.2828 Olbermann P, Josenhans C, Moodley Y, Uhr M, Stamer C, Vauterin M, et al. A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island. PLoS Genet. 2010;6:e1001069. The amplifications were carried out in 25 µL volume, each containing 12.5 µL mastermix (Lucigen, USA), 10 µL of each primers, 1 µL (25 ng) DNA and 10 µL DNAse and RNAse free sterile distilled water. PCR amplification for detection of cagPAI region consisted of initial denaturation at 95 °C for 3 min, followed by 30 cycles of 95 °C for 30 s, 50 °C for 60 s, and 72 °C for 45 s, ending with final extension at 72 °C for 5 min. The amplifications were performed in a PCR thermal cycler T100 Series (Bio-Rad, USA). The products were run on 1.5% agarose gel and stained with FloroSafe DNA stain (1st BASE Pte. Ltd, Singapore) and visualized with gel documentation (AlphaImager, Biosciences, CA). The cagPAI-positive isolates (n = 91) were then subjected to subsequent PCRs for identification of all cagPAI genes using primers as described previously.2828 Olbermann P, Josenhans C, Moodley Y, Uhr M, Stamer C, Vauterin M, et al. A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island. PLoS Genet. 2010;6:e1001069.,3232 Ta LH, Hansen LM, Sause WE, Shiva O, Millstein A, Ottemann KM, et al. Conserved transcriptional unit organization of the cag pathogenicity island among Helicobacter pylori strains. Front Cellular Infect Microbiol. 2012;2:46. The absence of cag2 was confirmed with 690 or 1100 bp amplicon using empty-site PCR.2424 Schmidt HMA, Andres S, Nilsson C, Kovach Z, Kaakoush NO, Engstrand L, et al. The cagPAI is intact and functional but HP521 varies significantly in Helicobacter pylori isolates from Malaysia and Singapore. Eur J Clin Microbiol Infect Dis. 2010;29:439-51. cag14 was detected using four sets of primer pair as described earlier.3232 Ta LH, Hansen LM, Sause WE, Shiva O, Millstein A, Ottemann KM, et al. Conserved transcriptional unit organization of the cag pathogenicity island among Helicobacter pylori strains. Front Cellular Infect Microbiol. 2012;2:46. PCR amplification for cagPAI genes consisted of initial denaturation at 95 °C for 3 min, followed by 30 cycles of 95 °C for 30 s, annealing temperature for 60 s (48 °C for cag11, 48.8 °C for cag3 and 55 °C for cag1, cag2, cag4, cag5, cagα, cag6 to cag10, cag12 to cag26), and extension at 72 °C for 45 s. A final extension at 72 °C for 5 min was performed for each PCR run. Representative positive PCR products (n = 28) were sent for sequencing and the nucleotide sequences were blasted against NCBI databases to confirm the gene identity.

Statistical analysis

Statistical analysis was performed using SPSS software version 23 (SPSS Inc, Chicago, IL, USA). Differences between groups were evaluated using Chi-square (χ2) test with Yate's continuity correction and Fisher's exact test. Independent t-test was used to compare means between different groups of histopathological scores. Score was represented with mean ± standard error of mean (SE). Differences were considered significant when p value was <0.05.

Results

Histopathological characteristics of the gastric mucosa in the studied ethnic groups

Histopathological scores of the gastric mucosa among different ethnic groups showed that the Malays had higher mean scores for H. pylori density and neutrophil activity whereas the Chinese showed higher grade of inflammation (Table 1). Higher mean score for intestinal metaplasia was observed among the Indians, while atrophy of higher grade was observed in the Chinese. Patients of different ethnicities were grouped into different types of disease conditions based on the histopathological changes (Table 2), i.e. chronic gastritis (CG) (n = 18), chronic active gastritis (CAG) (n = 41) and intestinal metaplasia/atrophy (IM/Atr) (n = 26). There was a significant difference in the proportion of CG and CAG between Chinese and non-Chinese patients. CG was more diagnosed in Chinese patients compared to non-Chinese (p = 0.03), whereas CAG and IM/Atr were more observed in non-Chinese than in Chinese (p = 0.042) patients.

Table 1
Histopathological scores of the gastric mucosa in different ethnic groups.
Table 2
Disease groups in different ethnicities.

Distribution of the cagPAI genes in H. pylori isolates

A total of 96.6% (n = 85) of the isolates were cagPAI-positive. Five genes in the cagPAI region (cag1, cag5, cag6, cag8 and cag21) were detected in all isolates whereas cag2 was detected in 34.1% (n = 29) and cag14 in 51.7% (n = 44) of the isolates (Table S1 Appendix A Supplementary data Supplementary material related to this article can be found, in the online version, at doi:https://doi.org/10.1016/j.bjid.2020.10.005. ). Detection of other genes ranged from 69.4 to 98.8%.

Six genes (cag1, cag5, cag6, cag8, cag21 and cag26) in the cagPAI region were detected in all Indian isolates, whereas 12 and 19 genes were detected in all Chinese and Malay isolates, respectively (Table S1 Appendix A Supplementary data Supplementary material related to this article can be found, in the online version, at doi:https://doi.org/10.1016/j.bjid.2020.10.005. ). The twelve genes detected in Chinese isolates were cag1, cag3, cag5, cag6, cag8, cag9, cag12, cag13, cag15, cag20-22. The 19 genes detected in Malay isolates were cag1, cag3, cag5-9, cag11-13, cag15-19, cag21-23 and cag26. A significant difference in detection of cag2, cag4, cag14 and cag24 were observed among H. pylori from patients with different ethnicities. Detection of cag2 was significantly higher in isolates from Malays (86.7%), followed by Indians (57.9%) and was least in Chinese isolates (9.8%) (χ2 = 36.62, df = 2, p < 0.0001). The presence of cag4 was more frequent in isolates from Chinese (80.4%) compared to the Malays (46.7%) and Indians (63.2%) (χ2 = 7.001, df = 2, p = 0.03). Significant difference was observed in the detection of cag14 in Malay isolates (93.3%) compared to Chinese (39.2%) and Indian (52.6%) isolates (χ2 = 13.603, df = 2, p = 0.001). Also, the frequency of cag24 was significantly higher in isolates from Malays (93.3%) and Indians (89.5%) compared to isolates from Chinese patients (54.9%) (χ2 = 12.701, df = 2, p = 0.002).

We did further analyses to look for the distribution of individuals cagPAI genes in different disease conditions. All cagPAI genes showed a similar distribution in CG, CAG and IM/Atr (data not shown) except for the cag2. cag2 was detected in 11.8% (2/17) of CG, 35% (14/40) of CAG and 44% (11/25) of IM/Atr. However, no significant difference was observed for the detection of H. pylori carrying cag2 in different groups of diseases (p = 0.086).

Analysis of cagPAI intactness in H. pylori isolates

The cagPAI was defined as intact if all gene sets of the cagPAI were present including strains lacking only the cag2 (HP0521). A previous systematic mutagenesis study showed that the HP0521 gene was not involved in the process of CagA translocation and IL-8 induction.77 Fischer W, Puls J, Buhrdorf R, Gebert B, Odenbreit S, Hass R. Systematic mutagenesis of the Helicobacter pylori cag pathogenicity island: essential genes for CagA translocation in host cells and induction of interleukin-8. Mol Microbiol. 2001;42:1337-48. In addition, NCBI database defined the HP0521 as a pseudogene (NCBI-Gene ID: 900040) (DBGET/LinkBD: an integrated database retrieval system, last accessed Oct 8, 2018). Partial cagPAI was defined when an isolate lacked one or more cagPAI genes other than cag2 (HP0521), while negative/deleted cagPAI was defined if none of the genes was present and a product of approximately 650 bp with primers from the flanking regions was obtained. Among the 85 cagPAI-positive H. pylori strains, 22.4% (n = 19) had intact cagPAI and 77.6% (n = 66) exhibited partial (rearranged) cagPAI. Strains harbouring intact or partial cagPAI were not associated with patients' ethnicities (p > 0.05).

Association between cagPAI intactness and histopathological scores of the gastric mucosa are shown in Table 3. The presence of partial cagPAI was significantly related to higher total score of H. pylori density (p = 0.037) and neutrophil activity (p = 0.038) compared to intact cagPAI. H. pylori harbouring deleted cagPAI was significantly correlated with higher inflammatory score (mononuclear infiltration) compared to H. pylori with partial cagPAI (p = 0.004). The distribution of H. pylori with intact cagPAI was more detected in the gastric mucosa with IM/Atr, whereas partial cagPAI H. pylori was more detected in CAG, however the difference was not significant. Moderate and severe scores of H. pylori density, mononuclear infiltration, neutrophil activity, and atrophy were observed more in gastric mucosa from Chinese patients infected with H. pylori strains harbouring cagPAI than other ethnicities (Malays and Indians) (Table S2 Appendix A Supplementary data Supplementary material related to this article can be found, in the online version, at doi:https://doi.org/10.1016/j.bjid.2020.10.005. ).

Table 3
Association of H. pylori cagPAI intactness with histopathological changes of gastric mucosa.

Discussion

Major differences in the prevalence of H. pylori infection and disease-related severity were observed among patients from multiracial ethnicities.1919 Epplein M, Signorello LB, Zheng W, Peek RM, Michel A, Williams SM, et al. Race, African ancestry, and Helicobacter pylori infection in a low-income United States population. Cancer Epidemiol Biomarkers Prev. 2011;20:826-34.,2020 Latifi-Navid S, Ghorashi SA, Siavoshi F, Linz B, Massarrat S, Khegay T, et al. Ethnic and geographic differentiation of Helicobacter pylori within Iran. PLoS One. 2010;5:e9645. Bacterial virulence factor is one of the contributing factors for the development of severe H. pylori-related diseases. The diversity of cagPAI organization in the H. pylori genome may have a modifying effect on the pathogenic potential of the infecting strain.2121 Yuan XY, Yan JJ, Yang YC, Wu CM, Hu Y, Geng JL. Helicobacter pylori with East Asian-type cagPAI genes is more virulent than strains with Western-type in some cagPAI genes. Braz J Microbiol. 2017;48:218-24.

In this study, we comprehensively determined the presence of cagPAI region in 88 H. pylori isolates from Malaysian population which were isolated from patients of different ethnic groups. The results showed that more than 95% of H. pylori strains were cagPAI-positive where 22.4% of the isolates carried all cagPAI genes and 77.6% exhibited partial or rearrangement in the cagPAI genes. Our previous study had showed that 3.2% of the isolates had all the cagPAI genes.1818 Alfizah H, Rukman AH, Norazah A, Hamizah R, Ramelah M. Ethnicity association of Helicobacter pylori virulence genotype and metronidazole susceptibility. World J Gastroenterol. 2013;19:1283-91. Low percentage of H. pylori isolates harbouring intact cagPAI genes was observed in our previous study because only a subset of the cagPAI genes (cag67, cag10, cag13, cagT, cagM and cagE) was analysed as these genes were shown to have linkage with certain cagPAI genes and severe disease outcome as described in earlier studies.2222 Deguchi R, Igarashi M, Watanabe K, Takagi A. Analysis of the cag pathogenicity island and IS605 of Helicobacter pylori strains isolated from patients with gastric cancer in Japan. Aliment Pharmacol Ther. 2004;20:13-6.,2323 Hsu PI, Hwang IR, Cittelly D, Lai KH, El-Zimaity HM, Gutierrez O, et al. Clinical presentation in relation to diversity within the Helicobacter pylori cag pathogenicity island. Am J Gastroenterol. 2002;97:2231-8. In contrast, high frequency of intact cagPAI and low frequency of partial cagPAI in H. pylori strains isolated from similar ethnic populations was reported by Schmidt et al.2424 Schmidt HMA, Andres S, Nilsson C, Kovach Z, Kaakoush NO, Engstrand L, et al. The cagPAI is intact and functional but HP521 varies significantly in Helicobacter pylori isolates from Malaysia and Singapore. Eur J Clin Microbiol Infect Dis. 2010;29:439-51. In their study, cagE, cagL, cagT and HP521 were examined to assess the intactness of cagPAI region. Discordance in the frequency of cagPAI intactness in many reports was due to the different cagPAI genes being examined.1313 Lai CH, Perng CL, Lan KH, Lin HJ. Association of detection of virulence gene belonging to cag pathogenicity island in Helicobacter pylori IS605 and cag-PAI of Helicobacter pylori isolated from patients with gastrointestinal diseases in Taiwan. Gastroenterol Res Pract. 2013. Article ID 356217.,2525 Antonio-Rincón F, López-Vidal Y, Castillo-Rojas G, Lazcano-Ponce EC, Ponce-de-León S, Tabche-Barrera ML, et al. cag Pathogenicity island, vacA and IS605 genotypes in Mexican strains of Helicobacter pylori associated with peptic ulcers. Ann Clin Microbiol Antimicrob. 2011;10:18.,2626 Varda Brkić D, Katičić M, Bedenić B, Stanko AP, Plečko V. Detection of virulence gene belonging to cag pathogenicity island in Helicobacter pylori isolates after multiple unsuccessful eradication therapy in Northwest Croatia. Period Biol. 2016;118:45-52. Thus, results of the present study indicate that deletions can occur in all parts of the cagPAI and screening the entire genes in the cagPAI is essential for an accurate determination of the organization of the cagPAI region. For comparison with our results, we reviewed only studies that screened all the cagPAI genes. A previous study observed complete cagPAI present in 82.6% of the strains, while a partially deleted cagPAI in 9.6% of the strains and 7.7% lacked the entire cagPAI in Indian population.1010 Patra R, Chattopadhyay S, De R, Datta S, Chowdhury A, Ramamurthy T, et al. Intact cag pathogenicity island of Helicobacter pylori without disease association in Kolkata, India. Int J Med Microbiol. 2011;301:293-302. In Swedish population, 76% of the strains carried an intact cagPAI, 15% had partially deleted cagPAI and 9% of the strains lacked the cagPAI.99 Nilsson C, Sillén A, Eriksson L, Strand ML, Enroth H, Normark S, et al. Correlation between cag pathogenicity island composition and Helicobacter pylori-associated gastroduodenal disease. Infect Immun. 2003;71:6573-81. A study by Azuma et al.2727 Azuma T, Yamakawa A, Yamazaki S, Ohtani M, Ito Y, Muramatsu A, et al. Distinct diversity of the cag pathogenicity island among Helicobacter pylori strains in Japan. J Clin Microbiol. 2004;42:2508-17. showed that the complete cagPAI was identified in all 11 Japanese isolates. Variation in the cagPAI positivity in different population of H. pylori isolates might be related to different geographical origin of H. pylori subpopulations. Presence of the cagPAI region is almost universal in H. pylori hpEastAsia and hpAfrica1 populations, intermediate presence in hpEurope, and complete absence in hpAfrica2.2828 Olbermann P, Josenhans C, Moodley Y, Uhr M, Stamer C, Vauterin M, et al. A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island. PLoS Genet. 2010;6:e1001069. Malaysian isolates showed a mixed subpopulation of hpEastAsia, hpAsia2, and hpEurope as indicated by multiracial communities living in the country.2929 Breurec S, Guillard B, Hem S, Brisse S, Dieye FB, Huerre M, et al. Evolutionary history of Helicobacter pylori sequences reflect past human migrations in Southeast Asia. PLoS One. 2011;6:.,3030 Tay CY, Mitchell H, Dong Q, Goh KL, Dawes IW, Lan R. Population structure of Helicobacter pylori among ethnic groups in Malaysia: recent acquisition of the bacterium by the Malay population. BMC Microbiol. 2009;9:126.

Analysis of the entire 27 cagPAI genes in the present study revealed that cag1, cag5, cag6, cag8 and cag21 were present in all isolates, which might represent core genes of the cagPAI region. However, function of the cag1, cag6 and cag21 are still unknown.2828 Olbermann P, Josenhans C, Moodley Y, Uhr M, Stamer C, Vauterin M, et al. A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island. PLoS Genet. 2010;6:e1001069. cag5 (HP0524, cagβ) and cag8 (HP0528, cagX) is a component of T4SS (VirB9 and VirD4).2828 Olbermann P, Josenhans C, Moodley Y, Uhr M, Stamer C, Vauterin M, et al. A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island. PLoS Genet. 2010;6:e1001069. One strain lacked cagA gene but had other cagPAI genes indicating that cagA-positive isolates do not necessarily harbour intact cagPAI region. Indian isolates showed more rearrangement in the cagPAI region compared to Malay and Chinese isolates. Studies show that the subpopulations of H. pylori Indian isolates in Malaysia consist of mixed populations i.e., hpEurope, hpAsia2, and hpEAsia reflecting on the diversity of cagPAI genes rearrangement in the Indian isolates.2929 Breurec S, Guillard B, Hem S, Brisse S, Dieye FB, Huerre M, et al. Evolutionary history of Helicobacter pylori sequences reflect past human migrations in Southeast Asia. PLoS One. 2011;6:.,3030 Tay CY, Mitchell H, Dong Q, Goh KL, Dawes IW, Lan R. Population structure of Helicobacter pylori among ethnic groups in Malaysia: recent acquisition of the bacterium by the Malay population. BMC Microbiol. 2009;9:126.

The presence of specific genes in H. pylori isolates associated with different ethnicities (cag4 in the Chinese isolates and cag2, cag14 and cag24 in the non-Chinese isolates) might represent strains associated disease outcomes. The cag4 (VirB1) is a component of T4SS, whereas the function is still unknown for cag2, cag14 and cag24.2828 Olbermann P, Josenhans C, Moodley Y, Uhr M, Stamer C, Vauterin M, et al. A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island. PLoS Genet. 2010;6:e1001069. Although the difference was not statistically significant, high frequency of cag2 was detected in gastric mucosa with CAG and IM/Atr and reflects the presence of this gene in non-Chinese isolates. These observations require further investigation to decipher the role of these genes.

We found an association of cagPAI intactness with histopathological scores of the gastric mucosa. H. pylori harbouring partial cagPAI were associated with higher density of H. pylori and neutrophil activity, whereas H. pylori with deleted cagPAI caused increased in inflammatory score. The presence of neutrophil activity in the gastric mucosa was associated with CAG. In addition, in our study partial cagPAI H. pylori strains was more often detected in patients with CAG. As strains with deleted cagPAI only cause inflammation of the gastric mucosa, the presence of cagPAI proteins encoded by H. pylori strains is needed to cause more severe disease such as active gastritis and intestinal metaplasia. However, no specific gene causing severe conditions could be identified. A group of genes that encodes T4SS and induction of IL-8 secretion has been shown to be involved in disease development process.77 Fischer W, Puls J, Buhrdorf R, Gebert B, Odenbreit S, Hass R. Systematic mutagenesis of the Helicobacter pylori cag pathogenicity island: essential genes for CagA translocation in host cells and induction of interleukin-8. Mol Microbiol. 2001;42:1337-48.,2424 Schmidt HMA, Andres S, Nilsson C, Kovach Z, Kaakoush NO, Engstrand L, et al. The cagPAI is intact and functional but HP521 varies significantly in Helicobacter pylori isolates from Malaysia and Singapore. Eur J Clin Microbiol Infect Dis. 2010;29:439-51.

Conclusions

This study shows the diversity in the arrangement of cagPAI in H. pylori isolates obtained from different ethnic groups in Malaysia. Comprehensive screening of the entire cagPAI genes provided a more accurate overview of the H. pylori cagPAI genotype allowing for better identification of virulence traits of H. pylori in a multiracial population. This has implications for assessing different treatment options for treating H. pylori infections and can affect various disease outcomes. H. pylori strains harbouring partial/rearrangement of the cagPAI genes were associated with increased colonization and recruitment of neutrophils at the site of infection and further contribute to various disease outcomes caused by different H. pylori genotypes. Further studies in this area not only provide more information about the disease prevalence in various ethnic groups in Malaysia but also inform healthcare practitioners if a person from an ethnic group may be at risk of developing severe disease leading to the development of a customized treatment plan. The data obtained can be used to monitor national trends and develop further appropriate intervention strategies.

Availability of data and materials

Data will be shared upon request to the corresponding author alfizah@ppukm.ukm.edu.my.

  • Funding
    The research was funded by a grant from Ministry of Higher Education of Malaysia (grant no. FRGS/2/2014/SKK04/UKM/02/01). We also thank to Ministry of Higher Education of Malaysia for providing a studentship to SAR under the MyBrain15 program.
  • Ethics approval and consent to participate
    The research protocol was approved by the Medical Research Ethic Committee of the University (UKM1.5.3.5/244/JEP-2016-095). The present study used H. pylori stock cultures where the informed consent was not applicable. However, these isolates were obtained from patients in previous studies (research no. ETP-2013-042 and GUP-2011-307) where informed consent was obtained from all individuals included in the studies.

Acknowledgments

We would like to thank to the Universiti Kebangsaan Malaysia for providing both the permission and the facilities to conduct and publish this research and to the technical staffs of Dept. of Medical Microbiology & Immunology, Faculty of Medicine, Universiti Kebangsaan Malaysia for their technical help.

Appendix A Supplementary data

Supplementary material related to this article can be found, in the online version, at doi:https://doi.org/10.1016/j.bjid.2020.10.005.

References

  • 1
    Graham JR. Helicobacter pylori: human pathogen or simply an opportunist?. Lancet. 1995;345:1095-7.
  • 2
    Kusters JG, Van Vliet AH, Kuipers EJ. Pathogenesis of Helicobacter pylori infection. Clin Microbiol Rev. 2006;19,449-0.
  • 3
    Suerbaum S, Michetti P. Helicobacter pylori infection. N Engl J Med. 2002;347:1175-86.
  • 4
    Wroblewski LE, Peek RM, Wilson KT. Helicobacter pylori and gastric cancer: factors that modulate disease risk. Clin Microbiol Rev. 2010;23:713-39.
  • 5
    Compare D, Rocco A, Nardone G. Risk factors in gastric cancer. Eur Rev Med Pharmacol Sci. 2010;14:302-8.
  • 6
    Kim SS, Ruiz VE, Carroll JD, Moss SF. Helicobacter pylori in the pathogenesis of gastric cancer and gastric lymphoma. Cancer Lett. 2010;305:228-38.
  • 7
    Fischer W, Puls J, Buhrdorf R, Gebert B, Odenbreit S, Hass R. Systematic mutagenesis of the Helicobacter pylori cag pathogenicity island: essential genes for CagA translocation in host cells and induction of interleukin-8. Mol Microbiol. 2001;42:1337-48.
  • 8
    Hatakeyama M. SagA of CagA in Helicobacter pylori pathogenesis. Curr Opin Microbiol. 2008;11:30-7.
  • 9
    Nilsson C, Sillén A, Eriksson L, Strand ML, Enroth H, Normark S, et al. Correlation between cag pathogenicity island composition and Helicobacter pylori-associated gastroduodenal disease. Infect Immun. 2003;71:6573-81.
  • 10
    Patra R, Chattopadhyay S, De R, Datta S, Chowdhury A, Ramamurthy T, et al. Intact cag pathogenicity island of Helicobacter pylori without disease association in Kolkata, India. Int J Med Microbiol. 2011;301:293-302.
  • 11
    Bridge DR, Merrel DS. Polymorphism in the Helicobacter pylori CagA and VacA toxins and disease. Gut Microbes. 2013;4:101-17.
  • 12
    Sahara S, Sugimoto M, Vilaichone RK, Mahachai V, Miyajima H, Furuta T, et al. Role of Helicobacter pylori cagA EPIYA motif and vacA genotypes for the development of gastrointestinal diseases in Southeast Asian countries: a meta-analysis. BMC Infect Dis. 2012;1:2223.
  • 13
    Lai CH, Perng CL, Lan KH, Lin HJ. Association of detection of virulence gene belonging to cag pathogenicity island in Helicobacter pylori IS605 and cag-PAI of Helicobacter pylori isolated from patients with gastrointestinal diseases in Taiwan. Gastroenterol Res Pract. 2013. Article ID 356217.
  • 14
    Abadi ATB. Strategies used by helicobacter pylori to establish persistent infection. World J Gastroenterol. 2017;23:2870.
  • 15
    Parsonnet J, Friedman GD, Orentreich N, Vogelman H. Risk for gastric cancer in people with CagA positive or CagA negative Helicobacter pylori infection. Gut. 1997;40:297-301.
  • 16
    Waskito LA, Miftahussurur M, Lusida MI, Syam AF, Suzuki R, Subsomwong P, et al. Distribution and clinical associations of integrating conjugative elements and cag pathogenicity islands of Helicobacter pylori in Indonesia. Sci Rep. 2018;8:6073.
  • 17
    Khatoon J, Prasad KN, Prakash Rai R, Ghoshal UC, Krishnani N. Association of heterogenicity of Helicobacter pylori cag pathogenicity island with peptic ulcer diseases and gastric cancer. Bri J Biomed Sci. 2017;74:121-6.
  • 18
    Alfizah H, Rukman AH, Norazah A, Hamizah R, Ramelah M. Ethnicity association of Helicobacter pylori virulence genotype and metronidazole susceptibility. World J Gastroenterol. 2013;19:1283-91.
  • 19
    Epplein M, Signorello LB, Zheng W, Peek RM, Michel A, Williams SM, et al. Race, African ancestry, and Helicobacter pylori infection in a low-income United States population. Cancer Epidemiol Biomarkers Prev. 2011;20:826-34.
  • 20
    Latifi-Navid S, Ghorashi SA, Siavoshi F, Linz B, Massarrat S, Khegay T, et al. Ethnic and geographic differentiation of Helicobacter pylori within Iran. PLoS One. 2010;5:e9645.
  • 21
    Yuan XY, Yan JJ, Yang YC, Wu CM, Hu Y, Geng JL. Helicobacter pylori with East Asian-type cagPAI genes is more virulent than strains with Western-type in some cagPAI genes. Braz J Microbiol. 2017;48:218-24.
  • 22
    Deguchi R, Igarashi M, Watanabe K, Takagi A. Analysis of the cag pathogenicity island and IS605 of Helicobacter pylori strains isolated from patients with gastric cancer in Japan. Aliment Pharmacol Ther. 2004;20:13-6.
  • 23
    Hsu PI, Hwang IR, Cittelly D, Lai KH, El-Zimaity HM, Gutierrez O, et al. Clinical presentation in relation to diversity within the Helicobacter pylori cag pathogenicity island. Am J Gastroenterol. 2002;97:2231-8.
  • 24
    Schmidt HMA, Andres S, Nilsson C, Kovach Z, Kaakoush NO, Engstrand L, et al. The cagPAI is intact and functional but HP521 varies significantly in Helicobacter pylori isolates from Malaysia and Singapore. Eur J Clin Microbiol Infect Dis. 2010;29:439-51.
  • 25
    Antonio-Rincón F, López-Vidal Y, Castillo-Rojas G, Lazcano-Ponce EC, Ponce-de-León S, Tabche-Barrera ML, et al. cag Pathogenicity island, vacA and IS605 genotypes in Mexican strains of Helicobacter pylori associated with peptic ulcers. Ann Clin Microbiol Antimicrob. 2011;10:18.
  • 26
    Varda Brkić D, Katičić M, Bedenić B, Stanko AP, Plečko V. Detection of virulence gene belonging to cag pathogenicity island in Helicobacter pylori isolates after multiple unsuccessful eradication therapy in Northwest Croatia. Period Biol. 2016;118:45-52.
  • 27
    Azuma T, Yamakawa A, Yamazaki S, Ohtani M, Ito Y, Muramatsu A, et al. Distinct diversity of the cag pathogenicity island among Helicobacter pylori strains in Japan. J Clin Microbiol. 2004;42:2508-17.
  • 28
    Olbermann P, Josenhans C, Moodley Y, Uhr M, Stamer C, Vauterin M, et al. A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island. PLoS Genet. 2010;6:e1001069.
  • 29
    Breurec S, Guillard B, Hem S, Brisse S, Dieye FB, Huerre M, et al. Evolutionary history of Helicobacter pylori sequences reflect past human migrations in Southeast Asia. PLoS One. 2011;6:.
  • 30
    Tay CY, Mitchell H, Dong Q, Goh KL, Dawes IW, Lan R. Population structure of Helicobacter pylori among ethnic groups in Malaysia: recent acquisition of the bacterium by the Malay population. BMC Microbiol. 2009;9:126.
  • 31
    Dixon MF, Genta RM, Yardley JH, Correa P. Classification and grading of gastritis. The updated Sydney System. International Workshop on the Histopathology of Gastritis, Houston 1994. Am J Surg Pathol. 1996;20:1161-81.
  • 32
    Ta LH, Hansen LM, Sause WE, Shiva O, Millstein A, Ottemann KM, et al. Conserved transcriptional unit organization of the cag pathogenicity island among Helicobacter pylori strains. Front Cellular Infect Microbiol. 2012;2:46.

Publication Dates

  • Publication in this collection
    15 Jan 2021
  • Date of issue
    Nov-Dec 2020

History

  • Received
    28 May 2020
  • Accepted
    22 Oct 2020
  • Published
    4 Nov 2020
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