Artificial family selection based on growth rate in cultivated lines of Litopenaeus vannamei (Decapoda, Penaeidae) from Venezuela

Abstract

We investigated the effects of family selection on the growth rates of four genetic lines of Litopenaeus vannamei, the Pacific white shrimp, from Venezuela. The mean family weight at selection was 16.79 g and the mean growth rate was 0.169 g d-1 at a mean age of 138 days. The mean growth rates per generation were 0.141 g d-1 for the parental generation (P0), 0.173 g d-1 for the F1 and 0.191 g d-1 for the F2. Survival varied from 83.3% to 94.4%. There were statistically significant differences between lines, with lines B and C, growing at higher temperatures and lower salinities, showing the fastest growth. Regression analysis between growth rate and age for each genetic line showed high r² values, but smaller than those shown between growth rate and generation. The mean heritability (h²) estimated for growth rate was 0.25 ± 0.04, with line per generation values ranging from 0.18 to 0.38. The mean heritability for growth rate per line showed some variation but there was no correlation between heritability and growth rate. Females showed a greater gain in growth rate per generation than males due to their faster growth when they were older. This study shows the high potential of these L. vannamei populations for the future of shrimp culture in the Americas.

family selection; genetic improvement; growth rate; Litopenaeus vannamei

Artificial family selection based on growth rate in cultivated lines of Litopenaeus vannamei (Decapoda, Penaeidae) from Venezuela

Marcos De Donato^I; Raúl Ramirez^II; Chris Howell^II; Roberto Verginelli^II; Tomás Orta^II; Saúl Cabrera^II; Enrique Mata^II; Ramón Manrique^II

^ILaboratorio de Genética Molecular, Departamento de Biomedicina, Instituto de Investigaciones en Biomedicina y Ciencias Aplicadas, Universidad de Oriente, Cumaná, Venezuela

^IIAquamarina de la Costa Shrimp Farm, Santa Fe, Sucre, Venezuela

^{Send correspondence to}

ABSTRACT

We investigated the effects of family selection on the growth rates of four genetic lines of Litopenaeus vannamei, the Pacific white shrimp, from Venezuela. The mean family weight at selection was 16.79 g and the mean growth rate was 0.169 g d^-1 at a mean age of 138 days. The mean growth rates per generation were 0.141 g d^-1 for the parental generation (P₀), 0.173 g d^-1 for the F₁ and 0.191 g d^-1 for the F₂. Survival varied from 83.3% to 94.4%. There were statistically significant differences between lines, with lines B and C, growing at higher temperatures and lower salinities, showing the fastest growth. Regression analysis between growth rate and age for each genetic line showed high r² values, but smaller than those shown between growth rate and generation. The mean heritability (h²) estimated for growth rate was 0.25 ± 0.04, with line per generation values ranging from 0.18 to 0.38. The mean heritability for growth rate per line showed some variation but there was no correlation between heritability and growth rate. Females showed a greater gain in growth rate per generation than males due to their faster growth when they were older. This study shows the high potential of these L. vannamei populations for the future of shrimp culture in the Americas.

Key words: family selection, genetic improvement, growth rate, Litopenaeus vannamei.

Introduction

The worldwide decline in ocean fisheries stocks has provided impetus for a rapid growth in aquaculture activities, and the contribution of aquaculture to global supplies of aquatic species has grown from about 5% of total production by weight in 1970 to 38% in 2004 (Fisheries Global Information System), increasing an average of 8.7% per year. In terms of global aquaculture production, the total volume of cultured penaeids increased from 1.6% in 1970 to 36% in 2004 at an average rate of 12% per year.

The vast majority of farmed animals are produced using low performing wild or cultured stocks, which often suffer from genetic inferiority due to the erosion of genetic variability (genetic drift) and inbreeding. In 1993, less than 1% of world aquaculture production was based on broodstock originating from selective breeding programs (Gjedrem, 1997). However, in recent decades, substantial genetic improvement and increases in production efficiency have been achieved in some farmed fish species such as salmonids and tilapia (Hulata, 2001). This improvement has been achieved through the implementation of quantitative genetic principles facilitated by improved animal tagging systems. Growth rate was the first trait targeted for improvement by selective breeding due to its relation to production, but since there have been tremendous losses in salmonids and marine shrimp production due to infectious diseases, there is an increasing demand for disease resistant animals.

Early work on the genetics of economically important traits in Penaeids was related to domestication and culturing in closed cycles (AQUACOP, 1983; Lester, 1983). This work led to the establishment of breeding programs and the study of growth related traits (Lester, 1988; Goswani et al., 1990; Huang et al., 1990; Wyban, 1992). Recent efforts have focused on artificial selection for growth and growth related traits and resistance to virus infection (Argue et al., 2002; Coman et al., 2002; Goyard et al., 2002; Gitterle et al., 2005a, b; Kenway et al., 2006).

Venezuelan populations of Litopenaeus vannamei (formerly Penaeus vannamei) (Decapoda, Penaeidae), commonly called the Pacific white or whiteleg shrimp, although technically a prawn, have demonstrated a high growth potential for culture due to their performance in the production systems and, more importantly, the sanitary quality of their hatcheries, and are the only non-native populations used for breeding programs in Brazil, Colombia and Mexico (CENIACUA, 1999; Hernandez, 2002; ABCC, 2003).

During the study described in this paper we analyzed growth and survival data of three generations to evaluate the response to the family selection practiced in the genetic selection program applied to four lines of a domesticated strain of L. vannamei from Venezuela.

Materials and Methods

The study was undertaken from November 1999 through February 2003 at two sites belonging to Aquamarina Shrimp Farm, one located in the Venezuelan town of Unare, Anzoategui state (ponds), and the other in Santa Fe, Sucre state (hatchery). We carried out family selection on four lines (denoted A, B, C and D) of a cultivated strain of L. vannamei which had been grown under closed cycle conditions for more than nine years, using a mass selection program in order to improve growth performance (De Donato et al., 2005). Family selection was used over the other types of selection schemes because it maintains control of the crossing and relationships between individual L. vannamei.

During the study, the water temperature ranged from 27 °C to 34 °C, salinity from 2.5% to 3% and oxygen concentration was always within the normal range of 2.5% to 3%. The lines were maintained separately for their use as reproductive stock at different times during the year, with line A being grown from February to May (29 °C mean temperature, 2.9% salinity), line B from April to July (31 °C, 2.7%), line C from June to September (33 °C, 2.6%) and line D from December to March (27 °C, 3%). We selected an average of 46.5 families for each line and generation (ranging from 36 to 50), for a total of 558 families analyzed. Some of the families were discarded due to bacterial or fungal infections.

Selection was carried out on up to 50 full-sib families by mating matured males and females using artificial insemination. All the families were generated within two to three days of each other. From each mating, we randomly selected 6000 nauplii and raised them in 40-litre fiberglass tanks at a nauplii density of 150 L^-1 in previously purified sea water at a salinity of 3.5%. The sea water was purified by mechanical filtration and UV light treatment. The nauplii were fed with microalgae of the species Chaetoceros gracilis (stocks maintained at Aquamarina de la Costa, Santa Fe, Sucre, Venezuela) plus a commercial liquid larval diet (Liqualife, Cargill, USA) and Artemia nauplii (San Francisco Bay, USA) according to a standard protocol (FAO, 2003), with monitoring of viability and environmental temperature.

The larvae were raised to the post-larval (PL) stage with a minimum size of 5 mm to 6 mm (usually to stages PL8 to PL12) and then shipped 120 km in 10-litre bags containing sea water and pure oxygen at a temperature of 18 °C to a pond facility at Unare, where they were placed in PVC cages with a polyester fabric mesh inside two 60000-litre concrete tanks (25 cages per tank) at a density of 400 larvae per cage and fed commercial diets (PL granulates, Zeigler Bros., Inc., USA) with a 40% protein content for from five to six-and-a-half weeks. At this stage, a random sample of 30 juveniles from each family was counted and individually weighed to determine initial weight (stocking weight) and 150 juveniles from each family were labeled at the abdominal somites using the elastomer tagging system developed by Northwest Marine Technologies Inc. (Washington, USA) and stocked together in a concrete tank at a density of 144 m^-2. The juveniles were fed a commercial pond pellet diet containing 35% protein (AQUALINE, Purina, Venezuela). The tank had a constant air supply and the levels of oxygen, ammonia and nitrites were monitored on a regular basis. Random samples of 30 L. vannamei from the whole population were weighed every week to monitor growth and to adjust the feeding level. After 12 to 14 weeks in the tank, the shrimps were harvested, separated by family in cages. From each family, 32 shrimps (16 males and 16 females) were weighed. Family survival was calculated from the total number of L. vannamei harvested.

Weight data on families were analyzed using the Multiple Trait Derivative Free Restricted Maximum Likelihood (MTDFREML) program to estimate the breeding value, variance components and heritability (h²), using an animal model with sex as a fixed effect and growth rate as a simple character with restricted maximum likelihood calculations (Boldman et al., 1995). Also, full pedigree information was included in the dataset. No environmental effects were considered in the model. Fifteen of the families with the highest mid-parent breeding values, based on the growth rate of progeny, were selected as broodstock to produce the next generation of larvae. Analysis of the relationships between growth related parameters and other factors was carried out using t-tests, analysis of variance (ANOVA) calculating its coefficient (F) as the the proportion of the intergroup square mean on the intragroup square mean (error), and Pearson's regression analysis, calculating the Pearson's regression coefficient (r²) and correlation coefficient (r), as implemented in the SPSS Software Package, version 11.5.1 (SPSS Inc., USA).

After data analysis and determination of the best performing families, the selected families were again placed in a sixty-ton concrete tank and cultivated for another 21 to 25 weeks, using the same feeding and sampling scheme, at a density of 45 L. vannamei m^-2. After this period the animals were returned to the hatchery facility and were maintained in circular concrete tanks with aeration at a density of 6 individuals m^-2 until they reached sexual maturity. The new 50 families were formed by mating males and females from the selected families as previously described. To decrease the effect of inbreeding, the crosses were carried out using families that were not related. No intrafamily selection was carried out and the mature L. vannamei were chosen at random.

Results

The mean of family means for weight at stocking was 1.83 g, and the mean of family means for final weight was 16.79 g, for an mean growth rate of 0.169 g d^-1, grown for an average of 89.2 days (Table 1). Survival, although it varied among families in each line and generation, was high and ranged from 83.3% to 94.4% (Table 1), with the differences between sexes, lines or generations being very small and not statistically significant (F = 0.32, p = 0.7276). Survival did not statistically affect growth rate (F = 1.77 (p = 0.1845), r² = 0.007), even though there could have been, theoretically, a relationship between these two factors because of the effect of survival on L. vannamei unit density. The average female to male sex ratio was 1.04 ± 0.02 with a range of 0.42 to 2.00.

The L. vannamei were harvested after 84 days to 98 days in the tanks and the mean of the family means for weight and growth rate was found to be statistically higher in females than males (t = 5.27, p < 0.001; t = 5.25, p < 0.001; respectively). Furthermore, the final weight and growth rate regression coefficient (r²) and correlation coefficient (ρ) between females and males were high, being r² = 0.842 and ρ = 0.918 for final weight and r² = 0.859 and ρ = 0.927 for growth rate. Regression analyses between growth and age using the data for all individual L. vannamei and including separate analyses for each sex showed r² values varying from 62.4 to 65.9 (Figure 1), with the slopes of the curve for each sex showing statistically significant differences so that the older the L. vannamei the larger was the difference between the mean weights of females and males. We found statistically significant differences among generations in regard to both mean final weight (F = 717.7, p < 0.0001) and mean growth rate (F = 2907.1, p < 0.0001), with the growth rate in each line being the lowest for P₀ and the highest for F₂ (Figure 2). Regression analysis between the growth rate and age for each generation showed high r² values of around 90% and a comparison between the slopes of the curves for each generation showed that P₀ had the lowest slope and F₂ the highest. The coefficient of variation (CV), a measure of the variability in final weight, showed a decreasing trend in each generation, with the CV varying from 16.02 g to 13.35 g for females and from 13.51 g to 12.36 g for males, although it was only statistically significant in the females from line D.

The highest weight and growth rate occurred in lines B and C (F = 1852.4, p < 0,0001), which were grown at higher temperatures and lower salinities (Figure 2). This pattern was maintained across generations. Regression analysis between the growth rate of the juvenile L. vannamei in the cages (from one to six-and-a-half weeks old) and the L. vannamei in the tanks (from six-and-a-half to fourteen weeks old) showed a highly significant relationship (F = 73.31, p < 0.0001) but with very low values of regression and correlation coefficients (r² = 0.117, ρ = 0.341). The average heritability (h²) for growth rate was calculated as 0.25 ± 0.04, with line and generation values ranging from 0.18 to 0.38 (Table 1). The improvement in the growth rate was 22.7% between P₀ and F₁ and 10.4% between F₁ and F₂, with an average per generation of 16.5%. Similar improvements in growth rate occurred for both sexes, with the growth rate for females increasing 22.1% between P₀ and F₁ and 10.7 between F₁ and F₂, while for males the growth rate increased 23.4% between P₀ and F₁ and 10.7% between F₁ and F₂. When comparing the growth rates for the different sexes at each generation at the time of harvest (110 to 135 days old) and at the end of the culture period (150 to 300 days old) we found that due faster growth at older age, females showed a greater gain in growth rate per generation than males (Figure 3). The improvement in the growth rate at older age was estimated as 8.8% between P₀ and F₁ and as 16.1% between F₁ and F₂, for an average per generation of 7.5%, although there were statistically significant differences between the sexes (females = 13.8 between P₀ and F₁, 11.2 between F₁ and F₂; males 2.4 between P₀ and F₁, 3 between F₁ and F₂). The average heritability for growth rate per generation varied slightly from h² = 0.22 for P₀ to h² = 0.26 for F₁ and F₂. There was even greater variation between lines, with line A showing h² = 0.18, line B h² = 0.27, line C h² = 0.23 and line D h² = 0.32. However, there was no correlation between heritability and growth rate since the lines with the lowest growth rate values (A and D) showed the lowest (line A) and highest (line D) mean h² values.

Discussion

Artificial selection has been widely used to improve growth performance and disease resistance in several species of penaeids. For example, Fjalestad et al. (1999) have found significant differences between both half- and full-sibs for harvest weight and survival of infection with Taura Syndrome Virus (TSV) in L. vannamei. These authors also reported a genetic gain of 4.4% for harvest weight and 12.4% for survival after a challenge test using a selection index that equally weighted both factors, and also estimated h² to be between 0.45 and 0.50 for harvest weight and 0.22 and 0.35 for survival.

Argue et al. (2002) established two L. vannamei breeding lines, one selected entirely for growth and the second selected on an index weighted 70% for TSV resistance and 30% for growth. After one generation of selection, the growth line gained 21% more weight than the unselected control. Based on half-sib correlation the estimate of h² value for growth was 0.84 ± 0.43. In the TSV line there was an 18.4% increase in survival between selected and control L. vannamei, and the estimated h² value was 0.28. However, the TSV selected line was 4.6% smaller than the control line and there was a negative genetic correlation between family growth and mean family survival after infection with TSV. Kenway et al. (2006) also found high values of estimated heritability for growth rate, with h² ranging from 0.48 to 0.55 in Penaeus monodon.

The gain in growth weight reported by Argue et al. (2002) is similar to that obtained in our study for the first generation of selection of 23.7% across the four lines, even though our h² value for growth (0.25) was significantly lower than the corresponding value (0.84) reported by Argue et al. (2002) , and both were higher than the gain reported by Fjalestad et al. (1999). A similar increase in growth rate of 21% at the fifth generation of mass selection was reported by Goyard et al. (2002) for the penaeid L. stylirostris. These authors also investigated if early growth (mean weight 5 g) was related to later growth (commercial size) and found that L. stylirostris which were larger at first weight check tended to weigh more after the grow-out period. Goyard et al. (2002) also estimated the realized heritability of growth to be relatively low (0.11), which was probably due to a loss of genetic variability (Bierne et al., 2000). In our study we also observed a significant relationship between early and late growth, suggesting that growth in both age periods is determined by the same genes.

Even though the lines used in our study have undergone a reduction in genetic variability following many years of closed cycle culture, as demonstrated by De Donato et al. (2005), our h² estimations for growth (0.25) were higher than those (0.11) estimated by Goyard et al. (2002). Furthermore, our h² estimates for growth were similar to those obtained for L. vannamei by Fjalestad et al. (1999) and by Benzie et al. (1997) for P. monodon, but much lower than that reported by Argue et al. (2002) for L. vannamei and Kenway et al. (2006) for P. monodon. Gitterle et al. (2005b) found that in L. vannamei the estimated h² for body weight at harvest varied substantially (from 0.01 to 0.54) between the different batches they studied, with overall h² estimates for body weight of 0.17 and 0.24 in the two genetic lines they used.

Peréz-Rostro and Ibarra (2003a,b) estimated L. vannamei mean final weight h² values between 0.17 and 0.20 and found not only that the mean growth rate h² values increased with age to 0.20 at 17 weeks, 0.24 at 23 weeks and 0.34 at 29 weeks of culture but also that there was differential growth rates at different ages, with families growing better when younger not necessarily growing better when older. It is important to point out that h² values are intrinsic to the population and species studied, depending on the genetic background and environmental conditions in which the animals were reared (Lynch and Walsh, 1998), so that our estimates should not be directly compared to those estimated in other studies.

Hetzel et al. (2000) designed a genetic program for the detection of quantitative trait loci (QTL) in P. japonicus, establishing high (H) and low (L) body weight lines and found that the response to selection after one generation for growth at 185 days grow-out was an 8.3% improvement over the unselected mean. This increase was significantly less than that achieved in our study after an average of 89 days of grow-out but more similar to that obtained by us after 250 days to 300 days of culture. The average h² value estimated by Hetzel et al. (2000) was 0.234, somewhat lower than that found in our study. Preston et al. (2002) followed up the study of Hetzel et al. (2000) and found that a fifth generation of selection in the same H line produced only a 10% mean gain in weight at first harvest, compared to the unselected control line.

Argue et al. (2002) reported that L. vannamei females were 12.7% larger than males at harvest after 154 days of culture, while Gitterle et al. (2005b) also found that the females were on average 4.5% heavier than males at the end of the grow-out period. Kenway et al. (2006) found that the female weight increased from 9.1% heavier than males at 30 weeks of grow-out to 35.9% at 54 weeks. In our study, females were 4.8% larger than males after 89 days of culture and 15% larger after 250 days to 300 days of culture, showing that the sex difference increases in larger L. vannamei. This greater increase in growth rate per generation in females than in males may suggest that the selection process in the studied populations was more efficient for females than males, especially at older ages, but this issue should be addressed in more detail.

Argue et al. (2002) suggested that even though the female to male sex ratio varied from 0.66:1 to 2.25:1, with a mean value of 1.04 females for each male, the heritability of sex ratio was zero, indicating that it was not feasible to select for a higher percentage of females. In our study, we also found a mean female to male sex ratio of 1.04:1, with a very similar range. However, the potential for artificial selection for this trait will depend on the genetic basis of sex determination in shrimps and prawns, which has not yet been established (Benzie, 1998).

On exposing L. vannamei to different temperature environments, Lester and Lawson (1990) obtained heritabilities for growth rate that ranged from 0.05 to 0.60 for late juveniles and from 0.35 to 0.53 for early juveniles. In these experiments, heritability estimates increased as temperature increased, but conversely Lester and Pante (1992) observed that as temperature decreased, heritabilities increased. De Tomás Kutz et al. (1998), analyzed the effect of experimental temperature on growth and survival for L. vannamei and found that the heritability for final weight increased as temperature increased. Peréz-Rostro et al. (1999) carried out several experiments to estimate the heritability and genetic correlations of L. vannamei growth traits for several larval and grow-out stages of development and found that heritabilities for the growth traits were influenced by maternal and environmental effects. In our study, there was variation in the estimated average heritability by line, with the h² value for line C, grown at higher temperatures and lower salinities (33 °C, 2.6%), being lower (h² = 0.23) than for line D (h² = 0.32), grown at lower temperatures and higher salinities (27 °C, 3%), but no definite conclusion can be made since no correlation was found between growth rate and the estimated value of heritability.

Coman et al. (2002) examined genotype-environment interactions on survival and growth in Penaeus japonicus growing at different temperatures and found that the interactions for both traits were significant when differences in temperature were larger than 5 °C and that the effect was more pronounced on survival than on growth, suggesting that temperature by family interaction could affect the efficiency of artificial selection.

In the same L. vannamei populations as were studied by us, De Donato et al. (2005) reported that the gain in growth rate produced by mass selection was 14.5% after 11 generations. In our study, the family selection system produced twice as high a gain (33.1%) in only two generations, demonstrating the effectiveness of the family selection system in improving growth rate in this strain of L. vannamei under the conditions stated. These results suggest that the potential for selection response of this population makes it a great resource for the future of shrimp aquaculture in the Americas.

Acknowledgments

We wish to acknowledge the extensive support provided by Rodolfo Luzardo and Federico Rivero in carrying out this study and for allowing the publication of this information. They invested in genetic improvement techniques several years ago, and time has proven that their strategy was a wise investment. We also would like to acknowledge Harvey Persyn, Amber Persyn, Reginald Markham and Max Padron, who were all instrumental in the foundation and initial development of the project.

Internet Resources Section

Received: September 10, 2007; Accepted: March 8, 2008.

Associate Editor: Luiz Lehmann Coutinho

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Publication Dates

• Publication in this collection
  03 Sept 2008
• Date of issue
  Dec 2008

History

• Accepted
  08 Mar 2008
• Received
  10 Sept 2007